data_7HHB # _model_server_result.job_id 9DZTLaSwm4bqg-IGOVoR5g _model_server_result.datetime_utc '2024-11-06 18:45:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7hhb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":103}' # _entry.id 7HHB # _exptl.entry_id 7HHB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.232 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1S)-1-(pyridin-3-yl)ethyl]cyclopropanamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7HHB _cell.length_a 41.66 _cell.length_b 42.07 _cell.length_c 158.39 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HHB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,M 1 1 B,H,I,J,N 2 1 C,K,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 L N N # _chem_comp.formula 'C10 H14 N2' _chem_comp.formula_weight 162.232 _chem_comp.id A1A3U _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1S)-1-(pyridin-3-yl)ethyl]cyclopropanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C A1A3U sing 1 n n N C1 A1A3U sing 2 n n C2 N A1A3U sing 3 n n C2 C3 A1A3U sing 4 n n C3 C4 A1A3U sing 5 n n C4 C2 A1A3U sing 6 n n C5 C1 A1A3U sing 7 n n C5 C6 A1A3U sing 8 n y C6 C7 A1A3U doub 9 n y C7 C8 A1A3U sing 10 n y C8 N1 A1A3U doub 11 n y N1 C9 A1A3U sing 12 n y C9 C5 A1A3U doub 13 n y C4 H9 A1A3U sing 14 n n C4 H8 A1A3U sing 15 n n C6 H10 A1A3U sing 16 n n C7 H11 A1A3U sing 17 n n C8 H12 A1A3U sing 18 n n C H A1A3U sing 19 n n C H2 A1A3U sing 20 n n C H1 A1A3U sing 21 n n C1 H3 A1A3U sing 22 n n N H4 A1A3U sing 23 n n C2 H5 A1A3U sing 24 n n C3 H7 A1A3U sing 25 n n C3 H6 A1A3U sing 26 n n C9 H13 A1A3U sing 27 n n # _atom_sites.entry_id 7HHB _atom_sites.fract_transf_matrix[1][1] 0.024004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 101 95 SO4 SO4 . E 2 SO4 A 1 102 96 SO4 SO4 . F 3 EDO A 1 103 97 EDO EDO . G 2 SO4 A 1 104 4 SO4 SO4 . H 2 SO4 B 1 101 1 SO4 SO4 . I 2 SO4 B 1 102 3 SO4 SO4 . J 4 A1A3U B 1 103 101 A1A3U LIG . K 2 SO4 C 1 101 5 SO4 SO4 . L 4 A1A3U C 1 102 101 A1A3U LIG . M 5 HOH A 1 201 304 HOH HOH . M 5 HOH A 2 202 341 HOH HOH . M 5 HOH A 3 203 307 HOH HOH . M 5 HOH A 4 204 202 HOH HOH . M 5 HOH A 5 205 357 HOH HOH . M 5 HOH A 6 206 71 HOH HOH . M 5 HOH A 7 207 139 HOH HOH . M 5 HOH A 8 208 66 HOH HOH . M 5 HOH A 9 209 339 HOH HOH . M 5 HOH A 10 210 84 HOH HOH . M 5 HOH A 11 211 337 HOH HOH . M 5 HOH A 12 212 353 HOH HOH . M 5 HOH A 13 213 85 HOH HOH . M 5 HOH A 14 214 91 HOH HOH . M 5 HOH A 15 215 38 HOH HOH . M 5 HOH A 16 216 188 HOH HOH . M 5 HOH A 17 217 383 HOH HOH . M 5 HOH A 18 218 55 HOH HOH . M 5 HOH A 19 219 346 HOH HOH . M 5 HOH A 20 220 78 HOH HOH . M 5 HOH A 21 221 293 HOH HOH . M 5 HOH A 22 222 87 HOH HOH . M 5 HOH A 23 223 23 HOH HOH . M 5 HOH A 24 224 97 HOH HOH . M 5 HOH A 25 225 28 HOH HOH . M 5 HOH A 26 226 356 HOH HOH . M 5 HOH A 27 227 86 HOH HOH . M 5 HOH A 28 228 167 HOH HOH . M 5 HOH A 29 229 37 HOH HOH . M 5 HOH A 30 230 8 HOH HOH . M 5 HOH A 31 231 60 HOH HOH . M 5 HOH A 32 232 289 HOH HOH . M 5 HOH A 33 233 94 HOH HOH . M 5 HOH A 34 234 299 HOH HOH . M 5 HOH A 35 235 41 HOH HOH . M 5 HOH A 36 236 42 HOH HOH . M 5 HOH A 37 237 367 HOH HOH . M 5 HOH A 38 238 199 HOH HOH . M 5 HOH A 39 239 95 HOH HOH . M 5 HOH A 40 240 288 HOH HOH . M 5 HOH A 41 241 2 HOH HOH . M 5 HOH A 42 242 274 HOH HOH . M 5 HOH A 43 243 190 HOH HOH . M 5 HOH A 44 244 32 HOH HOH . M 5 HOH A 45 245 260 HOH HOH . M 5 HOH A 46 246 99 HOH HOH . M 5 HOH A 47 247 12 HOH HOH . M 5 HOH A 48 248 7 HOH HOH . M 5 HOH A 49 249 292 HOH HOH . M 5 HOH A 50 250 1 HOH HOH . M 5 HOH A 51 251 179 HOH HOH . M 5 HOH A 52 252 26 HOH HOH . M 5 HOH A 53 253 165 HOH HOH . M 5 HOH A 54 254 152 HOH HOH . M 5 HOH A 55 255 27 HOH HOH . M 5 HOH A 56 256 318 HOH HOH . M 5 HOH A 57 257 145 HOH HOH . M 5 HOH A 58 258 116 HOH HOH . M 5 HOH A 59 259 20 HOH HOH . M 5 HOH A 60 260 222 HOH HOH . M 5 HOH A 61 261 203 HOH HOH . M 5 HOH A 62 262 301 HOH HOH . M 5 HOH A 63 263 211 HOH HOH . M 5 HOH A 64 264 111 HOH HOH . M 5 HOH A 65 265 267 HOH HOH . M 5 HOH A 66 266 218 HOH HOH . M 5 HOH A 67 267 77 HOH HOH . M 5 HOH A 68 268 290 HOH HOH . M 5 HOH A 69 269 350 HOH HOH . M 5 HOH A 70 270 109 HOH HOH . M 5 HOH A 71 271 93 HOH HOH . M 5 HOH A 72 272 34 HOH HOH . M 5 HOH A 73 273 18 HOH HOH . M 5 HOH A 74 274 343 HOH HOH . M 5 HOH A 75 275 300 HOH HOH . M 5 HOH A 76 276 371 HOH HOH . M 5 HOH A 77 277 164 HOH HOH . M 5 HOH A 78 278 287 HOH HOH . M 5 HOH A 79 279 14 HOH HOH . M 5 HOH A 80 280 64 HOH HOH . M 5 HOH A 81 281 143 HOH HOH . M 5 HOH A 82 282 385 HOH HOH . M 5 HOH A 83 283 21 HOH HOH . M 5 HOH A 84 284 115 HOH HOH . M 5 HOH A 85 285 47 HOH HOH . M 5 HOH A 86 286 58 HOH HOH . M 5 HOH A 87 287 35 HOH HOH . M 5 HOH A 88 288 259 HOH HOH . M 5 HOH A 89 289 22 HOH HOH . M 5 HOH A 90 290 9 HOH HOH . M 5 HOH A 91 291 19 HOH HOH . M 5 HOH A 92 292 376 HOH HOH . M 5 HOH A 93 293 281 HOH HOH . M 5 HOH A 94 294 16 HOH HOH . M 5 HOH A 95 295 113 HOH HOH . M 5 HOH A 96 296 358 HOH HOH . M 5 HOH A 97 297 278 HOH HOH . M 5 HOH A 98 298 31 HOH HOH . M 5 HOH A 99 299 75 HOH HOH . M 5 HOH A 100 300 208 HOH HOH . M 5 HOH A 101 301 377 HOH HOH . M 5 HOH A 102 302 131 HOH HOH . M 5 HOH A 103 303 366 HOH HOH . M 5 HOH A 104 304 73 HOH HOH . M 5 HOH A 105 305 327 HOH HOH . M 5 HOH A 106 306 83 HOH HOH . M 5 HOH A 107 307 156 HOH HOH . M 5 HOH A 108 308 210 HOH HOH . M 5 HOH A 109 309 108 HOH HOH . M 5 HOH A 110 310 219 HOH HOH . M 5 HOH A 111 311 283 HOH HOH . M 5 HOH A 112 312 185 HOH HOH . M 5 HOH A 113 313 205 HOH HOH . M 5 HOH A 114 314 57 HOH HOH . M 5 HOH A 115 315 206 HOH HOH . M 5 HOH A 116 316 313 HOH HOH . M 5 HOH A 117 317 125 HOH HOH . M 5 HOH A 118 318 332 HOH HOH . M 5 HOH A 119 319 364 HOH HOH . N 5 HOH B 1 201 247 HOH HOH . N 5 HOH B 2 202 258 HOH HOH . N 5 HOH B 3 203 123 HOH HOH . N 5 HOH B 4 204 338 HOH HOH . N 5 HOH B 5 205 98 HOH HOH . N 5 HOH B 6 206 272 HOH HOH . N 5 HOH B 7 207 89 HOH HOH . N 5 HOH B 8 208 184 HOH HOH . N 5 HOH B 9 209 69 HOH HOH . N 5 HOH B 10 210 249 HOH HOH . N 5 HOH B 11 211 279 HOH HOH . N 5 HOH B 12 212 331 HOH HOH . N 5 HOH B 13 213 215 HOH HOH . N 5 HOH B 14 214 46 HOH HOH . N 5 HOH B 15 215 117 HOH HOH . N 5 HOH B 16 216 25 HOH HOH . N 5 HOH B 17 217 10 HOH HOH . N 5 HOH B 18 218 119 HOH HOH . N 5 HOH B 19 219 375 HOH HOH . N 5 HOH B 20 220 242 HOH HOH . N 5 HOH B 21 221 54 HOH HOH . N 5 HOH B 22 222 17 HOH HOH . N 5 HOH B 23 223 5 HOH HOH . N 5 HOH B 24 224 360 HOH HOH . N 5 HOH B 25 225 137 HOH HOH . N 5 HOH B 26 226 172 HOH HOH . N 5 HOH B 27 227 223 HOH HOH . N 5 HOH B 28 228 6 HOH HOH . N 5 HOH B 29 229 329 HOH HOH . N 5 HOH B 30 230 68 HOH HOH . N 5 HOH B 31 231 354 HOH HOH . N 5 HOH B 32 232 96 HOH HOH . N 5 HOH B 33 233 224 HOH HOH . N 5 HOH B 34 234 24 HOH HOH . N 5 HOH B 35 235 150 HOH HOH . N 5 HOH B 36 236 169 HOH HOH . N 5 HOH B 37 237 280 HOH HOH . N 5 HOH B 38 238 120 HOH HOH . N 5 HOH B 39 239 101 HOH HOH . N 5 HOH B 40 240 261 HOH HOH . N 5 HOH B 41 241 61 HOH HOH . N 5 HOH B 42 242 355 HOH HOH . N 5 HOH B 43 243 168 HOH HOH . N 5 HOH B 44 244 44 HOH HOH . N 5 HOH B 45 245 197 HOH HOH . N 5 HOH B 46 246 315 HOH HOH . N 5 HOH B 47 247 76 HOH HOH . N 5 HOH B 48 248 36 HOH HOH . N 5 HOH B 49 249 74 HOH HOH . N 5 HOH B 50 250 59 HOH HOH . N 5 HOH B 51 251 182 HOH HOH . N 5 HOH B 52 252 214 HOH HOH . N 5 HOH B 53 253 160 HOH HOH . N 5 HOH B 54 254 13 HOH HOH . N 5 HOH B 55 255 320 HOH HOH . N 5 HOH B 56 256 359 HOH HOH . N 5 HOH B 57 257 79 HOH HOH . N 5 HOH B 58 258 175 HOH HOH . N 5 HOH B 59 259 72 HOH HOH . N 5 HOH B 60 260 157 HOH HOH . N 5 HOH B 61 261 217 HOH HOH . N 5 HOH B 62 262 104 HOH HOH . N 5 HOH B 63 263 303 HOH HOH . N 5 HOH B 64 264 340 HOH HOH . N 5 HOH B 65 265 322 HOH HOH . N 5 HOH B 66 266 177 HOH HOH . N 5 HOH B 67 267 153 HOH HOH . N 5 HOH B 68 268 347 HOH HOH . N 5 HOH B 69 269 201 HOH HOH . N 5 HOH B 70 270 316 HOH HOH . N 5 HOH B 71 271 163 HOH HOH . N 5 HOH B 72 272 342 HOH HOH . N 5 HOH B 73 273 361 HOH HOH . N 5 HOH B 74 274 291 HOH HOH . N 5 HOH B 75 275 335 HOH HOH . N 5 HOH B 76 276 378 HOH HOH . N 5 HOH B 77 277 170 HOH HOH . N 5 HOH B 78 278 344 HOH HOH . N 5 HOH B 79 279 314 HOH HOH . N 5 HOH B 80 280 107 HOH HOH . N 5 HOH B 81 281 312 HOH HOH . O 5 HOH C 1 201 323 HOH HOH . O 5 HOH C 2 202 321 HOH HOH . O 5 HOH C 3 203 317 HOH HOH . O 5 HOH C 4 204 330 HOH HOH . O 5 HOH C 5 205 382 HOH HOH . O 5 HOH C 6 206 173 HOH HOH . O 5 HOH C 7 207 254 HOH HOH . O 5 HOH C 8 208 226 HOH HOH . O 5 HOH C 9 209 352 HOH HOH . O 5 HOH C 10 210 49 HOH HOH . O 5 HOH C 11 211 334 HOH HOH . O 5 HOH C 12 212 296 HOH HOH . O 5 HOH C 13 213 384 HOH HOH . O 5 HOH C 14 214 90 HOH HOH . O 5 HOH C 15 215 102 HOH HOH . O 5 HOH C 16 216 118 HOH HOH . O 5 HOH C 17 217 269 HOH HOH . O 5 HOH C 18 218 45 HOH HOH . O 5 HOH C 19 219 15 HOH HOH . O 5 HOH C 20 220 284 HOH HOH . O 5 HOH C 21 221 161 HOH HOH . O 5 HOH C 22 222 363 HOH HOH . O 5 HOH C 23 223 271 HOH HOH . O 5 HOH C 24 224 295 HOH HOH . O 5 HOH C 25 225 142 HOH HOH . O 5 HOH C 26 226 4 HOH HOH . O 5 HOH C 27 227 209 HOH HOH . O 5 HOH C 28 228 336 HOH HOH . O 5 HOH C 29 229 149 HOH HOH . O 5 HOH C 30 230 126 HOH HOH . O 5 HOH C 31 231 275 HOH HOH . O 5 HOH C 32 232 40 HOH HOH . O 5 HOH C 33 233 368 HOH HOH . O 5 HOH C 34 234 48 HOH HOH . O 5 HOH C 35 235 134 HOH HOH . O 5 HOH C 36 236 122 HOH HOH . O 5 HOH C 37 237 56 HOH HOH . O 5 HOH C 38 238 43 HOH HOH . O 5 HOH C 39 239 294 HOH HOH . O 5 HOH C 40 240 53 HOH HOH . O 5 HOH C 41 241 189 HOH HOH . O 5 HOH C 42 242 379 HOH HOH . O 5 HOH C 43 243 148 HOH HOH . O 5 HOH C 44 244 82 HOH HOH . O 5 HOH C 45 245 151 HOH HOH . O 5 HOH C 46 246 171 HOH HOH . O 5 HOH C 47 247 309 HOH HOH . O 5 HOH C 48 248 67 HOH HOH . O 5 HOH C 49 249 298 HOH HOH . O 5 HOH C 50 250 62 HOH HOH . O 5 HOH C 51 251 362 HOH HOH . O 5 HOH C 52 252 135 HOH HOH . O 5 HOH C 53 253 305 HOH HOH . O 5 HOH C 54 254 372 HOH HOH . O 5 HOH C 55 255 302 HOH HOH . O 5 HOH C 56 256 198 HOH HOH . O 5 HOH C 57 257 132 HOH HOH . O 5 HOH C 58 258 65 HOH HOH . O 5 HOH C 59 259 130 HOH HOH . O 5 HOH C 60 260 328 HOH HOH . O 5 HOH C 61 261 373 HOH HOH . O 5 HOH C 62 262 146 HOH HOH . O 5 HOH C 63 263 369 HOH HOH . O 5 HOH C 64 264 381 HOH HOH . O 5 HOH C 65 265 319 HOH HOH . O 5 HOH C 66 266 324 HOH HOH . O 5 HOH C 67 267 246 HOH HOH . O 5 HOH C 68 268 241 HOH HOH . O 5 HOH C 69 269 270 HOH HOH . O 5 HOH C 70 270 310 HOH HOH . O 5 HOH C 71 271 70 HOH HOH . O 5 HOH C 72 272 345 HOH HOH . O 5 HOH C 73 273 63 HOH HOH . O 5 HOH C 74 274 349 HOH HOH . O 5 HOH C 75 275 374 HOH HOH . O 5 HOH C 76 276 103 HOH HOH . O 5 HOH C 77 277 348 HOH HOH . O 5 HOH C 78 278 92 HOH HOH . O 5 HOH C 79 279 370 HOH HOH . O 5 HOH C 80 280 380 HOH HOH . O 5 HOH C 81 281 365 HOH HOH . O 5 HOH C 82 282 351 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1A3U . . . J 4 17.168 -14.171 -25.23 0.8 32.86 ? N1 A1A3U 103 B 1 HETATM 2 C C4 A1A3U . . . J 4 18.234 -16.735 -20.175 0.8 36.39 ? C4 A1A3U 103 B 1 HETATM 3 C C5 A1A3U . . . J 4 18.725 -15.638 -24.118 0.8 37.05 ? C5 A1A3U 103 B 1 HETATM 4 C C6 A1A3U . . . J 4 18.059 -16.732 -24.65 0.8 34.16 ? C6 A1A3U 103 B 1 HETATM 5 C C7 A1A3U . . . J 4 16.99 -16.54 -25.5 0.8 33.6 ? C7 A1A3U 103 B 1 HETATM 6 C C8 A1A3U . . . J 4 16.588 -15.243 -25.768 0.8 34.08 ? C8 A1A3U 103 B 1 HETATM 7 C C A1A3U . . . J 4 21.173 -16.437 -24.123 0.8 33.89 ? C A1A3U 103 B 1 HETATM 8 C C1 A1A3U . . . J 4 20.037 -15.771 -23.352 0.8 43.64 ? C1 A1A3U 103 B 1 HETATM 9 N N A1A3U . . . J 4 19.944 -16.389 -22.023 0.8 31.02 ? N A1A3U 103 B 1 HETATM 10 C C2 A1A3U . . . J 4 18.628 -16.906 -21.602 0.8 36.68 ? C2 A1A3U 103 B 1 HETATM 11 C C3 A1A3U . . . J 4 17.549 -15.941 -21.241 0.8 34.07 ? C3 A1A3U 103 B 1 HETATM 12 C C9 A1A3U . . . J 4 18.209 -14.386 -24.419 0.8 34.03 ? C9 A1A3U 103 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 12 #