data_7HHC
#
_model_server_result.job_id            UU7fG9wDZEhpSW7arQR20A 
_model_server_result.datetime_utc      '2024-11-24 17:19:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7hhc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":103}' 
#
_entry.id    7HHC 
#
_exptl.entry_id    7HHC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              198.262 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4-methylpiperazin-1-yl)[(2R)-oxolan-2-yl]methanone 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7HHC 
_cell.length_a            41.35 
_cell.length_b            42.07 
_cell.length_c            158.2 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7HHC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,M 1 1 
B,H,I,J,N 2 1 
C,K,L,O 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 L N N 
#
_chem_comp.formula           'C10 H18 N2 O2' 
_chem_comp.formula_weight    198.262 
_chem_comp.id                SYX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4-methylpiperazin-1-yl)[(2R)-oxolan-2-yl]methanone 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N SYX sing 303 n n 
N C1 SYX sing 304 n n 
N C4 SYX sing 305 n n 
C1 C2 SYX sing 306 n n 
C4 C3 SYX sing 307 n n 
C3 N1 SYX sing 308 n n 
C2 N1 SYX sing 309 n n 
N1 C5 SYX sing 310 n n 
C5 C6 SYX sing 311 n n 
C5 O SYX doub 312 n n 
C6 C7 SYX sing 313 n n 
C6 O1 SYX sing 314 n n 
C7 C8 SYX sing 315 n n 
O1 C9 SYX sing 316 n n 
C9 C8 SYX sing 317 n n 
C4 H1 SYX sing 318 n n 
C4 H2 SYX sing 319 n n 
C6 H3 SYX sing 320 n n 
C7 H4 SYX sing 321 n n 
C7 H5 SYX sing 322 n n 
C8 H6 SYX sing 323 n n 
C8 H7 SYX sing 324 n n 
C H9 SYX sing 325 n n 
C H10 SYX sing 326 n n 
C H11 SYX sing 327 n n 
C1 H12 SYX sing 328 n n 
C1 H13 SYX sing 329 n n 
C2 H14 SYX sing 330 n n 
C2 H15 SYX sing 331 n n 
C3 H16 SYX sing 332 n n 
C3 H17 SYX sing 333 n n 
C9 H18 SYX sing 334 n n 
C9 H19 SYX sing 335 n n 
#
_atom_sites.entry_id                     7HHC 
_atom_sites.fract_transf_matrix[1][1]    0.024184 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02377 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006321 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SO4 A 1 101 95 SO4 SO4 . 
E 2 SO4 A 1 102 96 SO4 SO4 . 
F 3 EDO A 1 103 97 EDO EDO . 
G 2 SO4 A 1 104 4 SO4 SO4 . 
H 2 SO4 B 1 101 1 SO4 SO4 . 
I 2 SO4 B 1 102 3 SO4 SO4 . 
J 4 SYX B 1 103 101 SYX LIG . 
K 2 SO4 C 1 101 5 SO4 SO4 . 
L 4 SYX C 1 102 101 SYX LIG . 
M 5 HOH A 1 201 202 HOH HOH . 
M 5 HOH A 2 202 304 HOH HOH . 
M 5 HOH A 3 203 307 HOH HOH . 
M 5 HOH A 4 204 259 HOH HOH . 
M 5 HOH A 5 205 293 HOH HOH . 
M 5 HOH A 6 206 66 HOH HOH . 
M 5 HOH A 7 207 71 HOH HOH . 
M 5 HOH A 8 208 208 HOH HOH . 
M 5 HOH A 9 209 167 HOH HOH . 
M 5 HOH A 10 210 278 HOH HOH . 
M 5 HOH A 11 211 86 HOH HOH . 
M 5 HOH A 12 212 55 HOH HOH . 
M 5 HOH A 13 213 91 HOH HOH . 
M 5 HOH A 14 214 26 HOH HOH . 
M 5 HOH A 15 215 87 HOH HOH . 
M 5 HOH A 16 216 287 HOH HOH . 
M 5 HOH A 17 217 28 HOH HOH . 
M 5 HOH A 18 218 301 HOH HOH . 
M 5 HOH A 19 219 8 HOH HOH . 
M 5 HOH A 20 220 199 HOH HOH . 
M 5 HOH A 21 221 93 HOH HOH . 
M 5 HOH A 22 222 142 HOH HOH . 
M 5 HOH A 23 223 27 HOH HOH . 
M 5 HOH A 24 224 97 HOH HOH . 
M 5 HOH A 25 225 34 HOH HOH . 
M 5 HOH A 26 226 292 HOH HOH . 
M 5 HOH A 27 227 289 HOH HOH . 
M 5 HOH A 28 228 260 HOH HOH . 
M 5 HOH A 29 229 1 HOH HOH . 
M 5 HOH A 30 230 32 HOH HOH . 
M 5 HOH A 31 231 203 HOH HOH . 
M 5 HOH A 32 232 190 HOH HOH . 
M 5 HOH A 33 233 37 HOH HOH . 
M 5 HOH A 34 234 290 HOH HOH . 
M 5 HOH A 35 235 288 HOH HOH . 
M 5 HOH A 36 236 23 HOH HOH . 
M 5 HOH A 37 237 12 HOH HOH . 
M 5 HOH A 38 238 99 HOH HOH . 
M 5 HOH A 39 239 188 HOH HOH . 
M 5 HOH A 40 240 7 HOH HOH . 
M 5 HOH A 41 241 139 HOH HOH . 
M 5 HOH A 42 242 95 HOH HOH . 
M 5 HOH A 43 243 2 HOH HOH . 
M 5 HOH A 44 244 42 HOH HOH . 
M 5 HOH A 45 245 111 HOH HOH . 
M 5 HOH A 46 246 267 HOH HOH . 
M 5 HOH A 47 247 274 HOH HOH . 
M 5 HOH A 48 248 18 HOH HOH . 
M 5 HOH A 49 249 179 HOH HOH . 
M 5 HOH A 50 250 300 HOH HOH . 
M 5 HOH A 51 251 145 HOH HOH . 
M 5 HOH A 52 252 78 HOH HOH . 
M 5 HOH A 53 253 60 HOH HOH . 
M 5 HOH A 54 254 109 HOH HOH . 
M 5 HOH A 55 255 20 HOH HOH . 
M 5 HOH A 56 256 38 HOH HOH . 
M 5 HOH A 57 257 58 HOH HOH . 
M 5 HOH A 58 258 222 HOH HOH . 
M 5 HOH A 59 259 218 HOH HOH . 
M 5 HOH A 60 260 84 HOH HOH . 
M 5 HOH A 61 261 297 HOH HOH . 
M 5 HOH A 62 262 299 HOH HOH . 
M 5 HOH A 63 263 115 HOH HOH . 
M 5 HOH A 64 264 14 HOH HOH . 
M 5 HOH A 65 265 94 HOH HOH . 
M 5 HOH A 66 266 131 HOH HOH . 
M 5 HOH A 67 267 116 HOH HOH . 
M 5 HOH A 68 268 327 HOH HOH . 
M 5 HOH A 69 269 9 HOH HOH . 
M 5 HOH A 70 270 21 HOH HOH . 
M 5 HOH A 71 271 156 HOH HOH . 
M 5 HOH A 72 272 143 HOH HOH . 
M 5 HOH A 73 273 47 HOH HOH . 
M 5 HOH A 74 274 113 HOH HOH . 
M 5 HOH A 75 275 22 HOH HOH . 
M 5 HOH A 76 276 165 HOH HOH . 
M 5 HOH A 77 277 19 HOH HOH . 
M 5 HOH A 78 278 164 HOH HOH . 
M 5 HOH A 79 279 16 HOH HOH . 
M 5 HOH A 80 280 281 HOH HOH . 
M 5 HOH A 81 281 152 HOH HOH . 
M 5 HOH A 82 282 318 HOH HOH . 
M 5 HOH A 83 283 77 HOH HOH . 
M 5 HOH A 84 284 211 HOH HOH . 
M 5 HOH A 85 285 31 HOH HOH . 
M 5 HOH A 86 286 73 HOH HOH . 
M 5 HOH A 87 287 210 HOH HOH . 
M 5 HOH A 88 288 219 HOH HOH . 
M 5 HOH A 89 289 296 HOH HOH . 
M 5 HOH A 90 290 63 HOH HOH . 
M 5 HOH A 91 291 64 HOH HOH . 
M 5 HOH A 92 292 83 HOH HOH . 
M 5 HOH A 93 293 57 HOH HOH . 
M 5 HOH A 94 294 185 HOH HOH . 
M 5 HOH A 95 295 75 HOH HOH . 
M 5 HOH A 96 296 283 HOH HOH . 
M 5 HOH A 97 297 35 HOH HOH . 
M 5 HOH A 98 298 205 HOH HOH . 
M 5 HOH A 99 299 206 HOH HOH . 
M 5 HOH A 100 300 332 HOH HOH . 
N 5 HOH B 1 201 247 HOH HOH . 
N 5 HOH B 2 202 123 HOH HOH . 
N 5 HOH B 3 203 258 HOH HOH . 
N 5 HOH B 4 204 69 HOH HOH . 
N 5 HOH B 5 205 272 HOH HOH . 
N 5 HOH B 6 206 331 HOH HOH . 
N 5 HOH B 7 207 89 HOH HOH . 
N 5 HOH B 8 208 72 HOH HOH . 
N 5 HOH B 9 209 215 HOH HOH . 
N 5 HOH B 10 210 119 HOH HOH . 
N 5 HOH B 11 211 54 HOH HOH . 
N 5 HOH B 12 212 98 HOH HOH . 
N 5 HOH B 13 213 169 HOH HOH . 
N 5 HOH B 14 214 224 HOH HOH . 
N 5 HOH B 15 215 329 HOH HOH . 
N 5 HOH B 16 216 172 HOH HOH . 
N 5 HOH B 17 217 279 HOH HOH . 
N 5 HOH B 18 218 261 HOH HOH . 
N 5 HOH B 19 219 242 HOH HOH . 
N 5 HOH B 20 220 17 HOH HOH . 
N 5 HOH B 21 221 316 HOH HOH . 
N 5 HOH B 22 222 249 HOH HOH . 
N 5 HOH B 23 223 6 HOH HOH . 
N 5 HOH B 24 224 96 HOH HOH . 
N 5 HOH B 25 225 117 HOH HOH . 
N 5 HOH B 26 226 175 HOH HOH . 
N 5 HOH B 27 227 315 HOH HOH . 
N 5 HOH B 28 228 10 HOH HOH . 
N 5 HOH B 29 229 137 HOH HOH . 
N 5 HOH B 30 230 5 HOH HOH . 
N 5 HOH B 31 231 101 HOH HOH . 
N 5 HOH B 32 232 68 HOH HOH . 
N 5 HOH B 33 233 59 HOH HOH . 
N 5 HOH B 34 234 168 HOH HOH . 
N 5 HOH B 35 235 25 HOH HOH . 
N 5 HOH B 36 236 24 HOH HOH . 
N 5 HOH B 37 237 61 HOH HOH . 
N 5 HOH B 38 238 36 HOH HOH . 
N 5 HOH B 39 239 150 HOH HOH . 
N 5 HOH B 40 240 223 HOH HOH . 
N 5 HOH B 41 241 120 HOH HOH . 
N 5 HOH B 42 242 197 HOH HOH . 
N 5 HOH B 43 243 320 HOH HOH . 
N 5 HOH B 44 244 280 HOH HOH . 
N 5 HOH B 45 245 303 HOH HOH . 
N 5 HOH B 46 246 46 HOH HOH . 
N 5 HOH B 47 247 13 HOH HOH . 
N 5 HOH B 48 248 214 HOH HOH . 
N 5 HOH B 49 249 79 HOH HOH . 
N 5 HOH B 50 250 76 HOH HOH . 
N 5 HOH B 51 251 319 HOH HOH . 
N 5 HOH B 52 252 157 HOH HOH . 
N 5 HOH B 53 253 74 HOH HOH . 
N 5 HOH B 54 254 177 HOH HOH . 
N 5 HOH B 55 255 170 HOH HOH . 
N 5 HOH B 56 256 104 HOH HOH . 
N 5 HOH B 57 257 217 HOH HOH . 
N 5 HOH B 58 258 201 HOH HOH . 
N 5 HOH B 59 259 163 HOH HOH . 
N 5 HOH B 60 260 44 HOH HOH . 
N 5 HOH B 61 261 182 HOH HOH . 
N 5 HOH B 62 262 153 HOH HOH . 
N 5 HOH B 63 263 70 HOH HOH . 
N 5 HOH B 64 264 291 HOH HOH . 
N 5 HOH B 65 265 322 HOH HOH . 
N 5 HOH B 66 266 314 HOH HOH . 
N 5 HOH B 67 267 309 HOH HOH . 
N 5 HOH B 68 268 107 HOH HOH . 
N 5 HOH B 69 269 160 HOH HOH . 
N 5 HOH B 70 270 92 HOH HOH . 
N 5 HOH B 71 271 312 HOH HOH . 
N 5 HOH B 72 272 313 HOH HOH . 
N 5 HOH B 73 273 310 HOH HOH . 
O 5 HOH C 1 201 321 HOH HOH . 
O 5 HOH C 2 202 317 HOH HOH . 
O 5 HOH C 3 203 254 HOH HOH . 
O 5 HOH C 4 204 173 HOH HOH . 
O 5 HOH C 5 205 161 HOH HOH . 
O 5 HOH C 6 206 269 HOH HOH . 
O 5 HOH C 7 207 49 HOH HOH . 
O 5 HOH C 8 208 118 HOH HOH . 
O 5 HOH C 9 209 323 HOH HOH . 
O 5 HOH C 10 210 226 HOH HOH . 
O 5 HOH C 11 211 15 HOH HOH . 
O 5 HOH C 12 212 90 HOH HOH . 
O 5 HOH C 13 213 284 HOH HOH . 
O 5 HOH C 14 214 184 HOH HOH . 
O 5 HOH C 15 215 151 HOH HOH . 
O 5 HOH C 16 216 85 HOH HOH . 
O 5 HOH C 17 217 134 HOH HOH . 
O 5 HOH C 18 218 45 HOH HOH . 
O 5 HOH C 19 219 41 HOH HOH . 
O 5 HOH C 20 220 271 HOH HOH . 
O 5 HOH C 21 221 56 HOH HOH . 
O 5 HOH C 22 222 149 HOH HOH . 
O 5 HOH C 23 223 275 HOH HOH . 
O 5 HOH C 24 224 4 HOH HOH . 
O 5 HOH C 25 225 122 HOH HOH . 
O 5 HOH C 26 226 102 HOH HOH . 
O 5 HOH C 27 227 82 HOH HOH . 
O 5 HOH C 28 228 67 HOH HOH . 
O 5 HOH C 29 229 189 HOH HOH . 
O 5 HOH C 30 230 298 HOH HOH . 
O 5 HOH C 31 231 40 HOH HOH . 
O 5 HOH C 32 232 295 HOH HOH . 
O 5 HOH C 33 233 209 HOH HOH . 
O 5 HOH C 34 234 48 HOH HOH . 
O 5 HOH C 35 235 135 HOH HOH . 
O 5 HOH C 36 236 43 HOH HOH . 
O 5 HOH C 37 237 302 HOH HOH . 
O 5 HOH C 38 238 294 HOH HOH . 
O 5 HOH C 39 239 246 HOH HOH . 
O 5 HOH C 40 240 148 HOH HOH . 
O 5 HOH C 41 241 126 HOH HOH . 
O 5 HOH C 42 242 130 HOH HOH . 
O 5 HOH C 43 243 132 HOH HOH . 
O 5 HOH C 44 244 198 HOH HOH . 
O 5 HOH C 45 245 62 HOH HOH . 
O 5 HOH C 46 246 53 HOH HOH . 
O 5 HOH C 47 247 328 HOH HOH . 
O 5 HOH C 48 248 171 HOH HOH . 
O 5 HOH C 49 249 65 HOH HOH . 
O 5 HOH C 50 250 330 HOH HOH . 
O 5 HOH C 51 251 146 HOH HOH . 
O 5 HOH C 52 252 241 HOH HOH . 
O 5 HOH C 53 253 305 HOH HOH . 
O 5 HOH C 54 254 270 HOH HOH . 
O 5 HOH C 55 255 103 HOH HOH . 
O 5 HOH C 56 256 324 HOH HOH . 
O 5 HOH C 57 257 108 HOH HOH . 
O 5 HOH C 58 258 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 SYX . . . J 4 18.595 -15.19 -21.784 0.76 46.85 ? N1 SYX 103 B 1 
HETATM 2 C C4 SYX . . . J 4 18.193 -16.147 -19.577 0.76 52.07 ? C4 SYX 103 B 1 
HETATM 3 C C5 SYX . . . J 4 17.812 -14.641 -22.74 0.76 38.98 ? C5 SYX 103 B 1 
HETATM 4 C C6 SYX . . . J 4 18.1 -14.964 -24.214 0.76 31.45 ? C6 SYX 103 B 1 
HETATM 5 C C7 SYX . . . J 4 17.592 -16.341 -24.613 0.76 29.44 ? C7 SYX 103 B 1 
HETATM 6 C C8 SYX . . . J 4 16.778 -16.059 -25.88 0.76 29.29 ? C8 SYX 103 B 1 
HETATM 7 N N SYX . . . J 4 19.401 -16.96 -19.693 0.76 57.25 ? N SYX 103 B 1 
HETATM 8 C C SYX . . . J 4 19.276 -18.19 -18.888 0.76 58.14 ? C SYX 103 B 1 
HETATM 9 O O SYX . . . J 4 16.918 -13.874 -22.457 0.76 37.82 ? O SYX 103 B 1 
HETATM 10 C C1 SYX . . . J 4 19.636 -17.29 -21.099 0.76 53.53 ? C1 SYX 103 B 1 
HETATM 11 C C2 SYX . . . J 4 19.782 -16.035 -21.935 0.76 46.91 ? C2 SYX 103 B 1 
HETATM 12 C C3 SYX . . . J 4 18.328 -14.873 -20.373 0.76 49.87 ? C3 SYX 103 B 1 
HETATM 13 C C9 SYX . . . J 4 16.336 -14.596 -25.702 0.76 24.7 ? C9 SYX 103 B 1 
HETATM 14 O O1 SYX . . . J 4 17.436 -13.989 -25.043 0.76 28.93 ? O1 SYX 103 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           1008 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#