data_7HM3 # _model_server_result.job_id ECIbpd2ckGIFJffs5AqIUg _model_server_result.datetime_utc '2024-12-26 13:34:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7hm3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7HM3 # _exptl.entry_id 7HM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7HM3 _cell.length_a 95.511 _cell.length_b 95.511 _cell.length_c 45.852 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7HM3 _atom_sites.fract_transf_matrix[1][1] 0.01047 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO B 1 201 202 EDO EDO . C 3 K6U B 1 202 302 K6U LIG . D 2 EDO B 1 203 303 EDO EDO . E 2 EDO B 1 204 305 EDO EDO . F 4 SO4 B 1 205 1 SO4 SO4 . G 5 HOH B 1 301 75 HOH HOH . G 5 HOH B 2 302 36 HOH HOH . G 5 HOH B 3 303 14 HOH HOH . G 5 HOH B 4 304 29 HOH HOH . G 5 HOH B 5 305 11 HOH HOH . G 5 HOH B 6 306 107 HOH HOH . G 5 HOH B 7 307 12 HOH HOH . G 5 HOH B 8 308 2 HOH HOH . G 5 HOH B 9 309 63 HOH HOH . G 5 HOH B 10 310 21 HOH HOH . G 5 HOH B 11 311 4 HOH HOH . G 5 HOH B 12 312 1 HOH HOH . G 5 HOH B 13 313 33 HOH HOH . G 5 HOH B 14 314 40 HOH HOH . G 5 HOH B 15 315 99 HOH HOH . G 5 HOH B 16 316 16 HOH HOH . G 5 HOH B 17 317 26 HOH HOH . G 5 HOH B 18 318 9 HOH HOH . G 5 HOH B 19 319 27 HOH HOH . G 5 HOH B 20 320 129 HOH HOH . G 5 HOH B 21 321 95 HOH HOH . G 5 HOH B 22 322 51 HOH HOH . G 5 HOH B 23 323 90 HOH HOH . G 5 HOH B 24 324 31 HOH HOH . G 5 HOH B 25 325 34 HOH HOH . G 5 HOH B 26 326 5 HOH HOH . G 5 HOH B 27 327 25 HOH HOH . G 5 HOH B 28 328 10 HOH HOH . G 5 HOH B 29 329 16 HOH HOH . G 5 HOH B 30 330 133 HOH HOH . G 5 HOH B 31 331 80 HOH HOH . G 5 HOH B 32 332 11 HOH HOH . G 5 HOH B 33 333 70 HOH HOH . G 5 HOH B 34 334 18 HOH HOH . G 5 HOH B 35 335 68 HOH HOH . G 5 HOH B 36 336 27 HOH HOH . G 5 HOH B 37 337 36 HOH HOH . G 5 HOH B 38 338 102 HOH HOH . G 5 HOH B 39 339 39 HOH HOH . G 5 HOH B 40 340 100 HOH HOH . G 5 HOH B 41 341 55 HOH HOH . G 5 HOH B 42 342 20 HOH HOH . G 5 HOH B 43 343 22 HOH HOH . G 5 HOH B 44 344 26 HOH HOH . G 5 HOH B 45 345 7 HOH HOH . G 5 HOH B 46 346 72 HOH HOH . G 5 HOH B 47 347 184 HOH HOH . G 5 HOH B 48 348 2 HOH HOH . G 5 HOH B 49 349 267 HOH HOH . G 5 HOH B 50 350 86 HOH HOH . G 5 HOH B 51 351 126 HOH HOH . G 5 HOH B 52 352 81 HOH HOH . G 5 HOH B 53 353 28 HOH HOH . G 5 HOH B 54 354 89 HOH HOH . G 5 HOH B 55 355 32 HOH HOH . G 5 HOH B 56 356 29 HOH HOH . G 5 HOH B 57 357 1 HOH HOH . G 5 HOH B 58 358 43 HOH HOH . G 5 HOH B 59 359 116 HOH HOH . G 5 HOH B 60 360 50 HOH HOH . G 5 HOH B 61 361 10 HOH HOH . G 5 HOH B 62 362 58 HOH HOH . G 5 HOH B 63 363 156 HOH HOH . G 5 HOH B 64 364 6 HOH HOH . G 5 HOH B 65 365 19 HOH HOH . G 5 HOH B 66 366 62 HOH HOH . G 5 HOH B 67 367 66 HOH HOH . G 5 HOH B 68 368 157 HOH HOH . G 5 HOH B 69 369 47 HOH HOH . G 5 HOH B 70 370 3 HOH HOH . G 5 HOH B 71 371 33 HOH HOH . G 5 HOH B 72 372 4 HOH HOH . G 5 HOH B 73 373 304 HOH HOH . G 5 HOH B 74 374 172 HOH HOH . G 5 HOH B 75 375 59 HOH HOH . G 5 HOH B 76 376 61 HOH HOH . G 5 HOH B 77 377 211 HOH HOH . G 5 HOH B 78 378 8 HOH HOH . G 5 HOH B 79 379 82 HOH HOH . G 5 HOH B 80 380 76 HOH HOH . G 5 HOH B 81 381 15 HOH HOH . G 5 HOH B 82 382 85 HOH HOH . G 5 HOH B 83 383 3 HOH HOH . G 5 HOH B 84 384 13 HOH HOH . G 5 HOH B 85 385 93 HOH HOH . G 5 HOH B 86 386 25 HOH HOH . G 5 HOH B 87 387 17 HOH HOH . G 5 HOH B 88 388 71 HOH HOH . G 5 HOH B 89 389 24 HOH HOH . G 5 HOH B 90 390 32 HOH HOH . G 5 HOH B 91 391 303 HOH HOH . G 5 HOH B 92 392 9 HOH HOH . G 5 HOH B 93 393 264 HOH HOH . G 5 HOH B 94 394 137 HOH HOH . G 5 HOH B 95 395 14 HOH HOH . G 5 HOH B 96 396 46 HOH HOH . G 5 HOH B 97 397 48 HOH HOH . G 5 HOH B 98 398 8 HOH HOH . G 5 HOH B 99 399 64 HOH HOH . G 5 HOH B 100 400 125 HOH HOH . G 5 HOH B 101 401 214 HOH HOH . G 5 HOH B 102 402 60 HOH HOH . G 5 HOH B 103 403 97 HOH HOH . G 5 HOH B 104 404 281 HOH HOH . G 5 HOH B 105 405 56 HOH HOH . G 5 HOH B 106 406 23 HOH HOH . G 5 HOH B 107 407 257 HOH HOH . G 5 HOH B 108 408 263 HOH HOH . G 5 HOH B 109 409 49 HOH HOH . G 5 HOH B 110 410 42 HOH HOH . G 5 HOH B 111 411 30 HOH HOH . G 5 HOH B 112 412 44 HOH HOH . G 5 HOH B 113 413 154 HOH HOH . G 5 HOH B 114 414 20 HOH HOH . G 5 HOH B 115 415 7 HOH HOH . G 5 HOH B 116 416 38 HOH HOH . G 5 HOH B 117 417 15 HOH HOH . G 5 HOH B 118 418 54 HOH HOH . G 5 HOH B 119 419 197 HOH HOH . G 5 HOH B 120 420 18 HOH HOH . G 5 HOH B 121 421 103 HOH HOH . G 5 HOH B 122 422 140 HOH HOH . G 5 HOH B 123 423 120 HOH HOH . G 5 HOH B 124 424 69 HOH HOH . G 5 HOH B 125 425 41 HOH HOH . G 5 HOH B 126 426 45 HOH HOH . G 5 HOH B 127 427 57 HOH HOH . G 5 HOH B 128 428 53 HOH HOH . G 5 HOH B 129 429 22 HOH HOH . G 5 HOH B 130 430 5 HOH HOH . G 5 HOH B 131 431 112 HOH HOH . G 5 HOH B 132 432 37 HOH HOH . G 5 HOH B 133 433 19 HOH HOH . G 5 HOH B 134 434 30 HOH HOH . G 5 HOH B 135 435 266 HOH HOH . G 5 HOH B 136 436 114 HOH HOH . G 5 HOH B 137 437 115 HOH HOH . G 5 HOH B 138 438 270 HOH HOH . G 5 HOH B 139 439 21 HOH HOH . G 5 HOH B 140 440 23 HOH HOH . G 5 HOH B 141 441 31 HOH HOH . G 5 HOH B 142 442 98 HOH HOH . G 5 HOH B 143 443 104 HOH HOH . G 5 HOH B 144 444 166 HOH HOH . G 5 HOH B 145 445 205 HOH HOH . G 5 HOH B 146 446 127 HOH HOH . G 5 HOH B 147 447 34 HOH HOH . G 5 HOH B 148 448 131 HOH HOH . G 5 HOH B 149 449 35 HOH HOH . G 5 HOH B 150 450 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -29.012 -27.449 -19.369 0.65 24.87 ? C1 EDO 203 B 1 HETATM 2 O O1 EDO . . . D 2 -28.051 -26.574 -18.81 0.65 30.26 ? O1 EDO 203 B 1 HETATM 3 C C2 EDO . . . D 2 -30.348 -27.313 -18.761 0.65 22.79 ? C2 EDO 203 B 1 HETATM 4 O O2 EDO . . . D 2 -31.422 -27.393 -19.604 0.65 21.28 ? O2 EDO 203 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #