data_7HMD # _model_server_result.job_id pwSuCZ8F1dHrRiprlY98OQ _model_server_result.datetime_utc '2024-11-28 22:53:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7hmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 7HMD # _exptl.entry_id 7HMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7HMD _cell.length_a 95.768 _cell.length_b 95.768 _cell.length_c 45.513 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7HMD _atom_sites.fract_transf_matrix[1][1] 0.010442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021972 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO B 1 201 202 EDO EDO . C 3 H04 B 1 202 302 H04 LIG . D 2 EDO B 1 203 303 EDO EDO . E 2 EDO B 1 204 305 EDO EDO . F 4 SO4 B 1 205 1 SO4 SO4 . G 5 HOH B 1 301 75 HOH HOH . G 5 HOH B 2 302 4 HOH HOH . G 5 HOH B 3 303 12 HOH HOH . G 5 HOH B 4 304 29 HOH HOH . G 5 HOH B 5 305 1 HOH HOH . G 5 HOH B 6 306 11 HOH HOH . G 5 HOH B 7 307 51 HOH HOH . G 5 HOH B 8 308 16 HOH HOH . G 5 HOH B 9 309 2 HOH HOH . G 5 HOH B 10 310 27 HOH HOH . G 5 HOH B 11 311 90 HOH HOH . G 5 HOH B 12 312 33 HOH HOH . G 5 HOH B 13 313 31 HOH HOH . G 5 HOH B 14 314 40 HOH HOH . G 5 HOH B 15 315 21 HOH HOH . G 5 HOH B 16 316 26 HOH HOH . G 5 HOH B 17 317 34 HOH HOH . G 5 HOH B 18 318 102 HOH HOH . G 5 HOH B 19 319 63 HOH HOH . G 5 HOH B 20 320 25 HOH HOH . G 5 HOH B 21 321 81 HOH HOH . G 5 HOH B 22 322 11 HOH HOH . G 5 HOH B 23 323 72 HOH HOH . G 5 HOH B 24 324 5 HOH HOH . G 5 HOH B 25 325 2 HOH HOH . G 5 HOH B 26 326 214 HOH HOH . G 5 HOH B 27 327 95 HOH HOH . G 5 HOH B 28 328 68 HOH HOH . G 5 HOH B 29 329 184 HOH HOH . G 5 HOH B 30 330 34 HOH HOH . G 5 HOH B 31 331 16 HOH HOH . G 5 HOH B 32 332 62 HOH HOH . G 5 HOH B 33 333 28 HOH HOH . G 5 HOH B 34 334 80 HOH HOH . G 5 HOH B 35 335 86 HOH HOH . G 5 HOH B 36 336 99 HOH HOH . G 5 HOH B 37 337 129 HOH HOH . G 5 HOH B 38 338 89 HOH HOH . G 5 HOH B 39 339 157 HOH HOH . G 5 HOH B 40 340 39 HOH HOH . G 5 HOH B 41 341 7 HOH HOH . G 5 HOH B 42 342 10 HOH HOH . G 5 HOH B 43 343 36 HOH HOH . G 5 HOH B 44 344 126 HOH HOH . G 5 HOH B 45 345 267 HOH HOH . G 5 HOH B 46 346 85 HOH HOH . G 5 HOH B 47 347 43 HOH HOH . G 5 HOH B 48 348 20 HOH HOH . G 5 HOH B 49 349 35 HOH HOH . G 5 HOH B 50 350 211 HOH HOH . G 5 HOH B 51 351 18 HOH HOH . G 5 HOH B 52 352 27 HOH HOH . G 5 HOH B 53 353 116 HOH HOH . G 5 HOH B 54 354 76 HOH HOH . G 5 HOH B 55 355 58 HOH HOH . G 5 HOH B 56 356 281 HOH HOH . G 5 HOH B 57 357 73 HOH HOH . G 5 HOH B 58 358 26 HOH HOH . G 5 HOH B 59 359 47 HOH HOH . G 5 HOH B 60 360 55 HOH HOH . G 5 HOH B 61 361 15 HOH HOH . G 5 HOH B 62 362 22 HOH HOH . G 5 HOH B 63 363 264 HOH HOH . G 5 HOH B 64 364 50 HOH HOH . G 5 HOH B 65 365 82 HOH HOH . G 5 HOH B 66 366 19 HOH HOH . G 5 HOH B 67 367 29 HOH HOH . G 5 HOH B 68 368 10 HOH HOH . G 5 HOH B 69 369 6 HOH HOH . G 5 HOH B 70 370 70 HOH HOH . G 5 HOH B 71 371 66 HOH HOH . G 5 HOH B 72 372 13 HOH HOH . G 5 HOH B 73 373 8 HOH HOH . G 5 HOH B 74 374 71 HOH HOH . G 5 HOH B 75 375 4 HOH HOH . G 5 HOH B 76 376 304 HOH HOH . G 5 HOH B 77 377 60 HOH HOH . G 5 HOH B 78 378 1 HOH HOH . G 5 HOH B 79 379 100 HOH HOH . G 5 HOH B 80 380 61 HOH HOH . G 5 HOH B 81 381 172 HOH HOH . G 5 HOH B 82 382 59 HOH HOH . G 5 HOH B 83 383 197 HOH HOH . G 5 HOH B 84 384 125 HOH HOH . G 5 HOH B 85 385 303 HOH HOH . G 5 HOH B 86 386 37 HOH HOH . G 5 HOH B 87 387 9 HOH HOH . G 5 HOH B 88 388 32 HOH HOH . G 5 HOH B 89 389 24 HOH HOH . G 5 HOH B 90 390 154 HOH HOH . G 5 HOH B 91 391 3 HOH HOH . G 5 HOH B 92 392 3 HOH HOH . G 5 HOH B 93 393 156 HOH HOH . G 5 HOH B 94 394 25 HOH HOH . G 5 HOH B 95 395 45 HOH HOH . G 5 HOH B 96 396 33 HOH HOH . G 5 HOH B 97 397 9 HOH HOH . G 5 HOH B 98 398 32 HOH HOH . G 5 HOH B 99 399 97 HOH HOH . G 5 HOH B 100 400 56 HOH HOH . G 5 HOH B 101 401 12 HOH HOH . G 5 HOH B 102 402 8 HOH HOH . G 5 HOH B 103 403 64 HOH HOH . G 5 HOH B 104 404 14 HOH HOH . G 5 HOH B 105 405 30 HOH HOH . G 5 HOH B 106 406 49 HOH HOH . G 5 HOH B 107 407 23 HOH HOH . G 5 HOH B 108 408 93 HOH HOH . G 5 HOH B 109 409 48 HOH HOH . G 5 HOH B 110 410 18 HOH HOH . G 5 HOH B 111 411 42 HOH HOH . G 5 HOH B 112 412 20 HOH HOH . G 5 HOH B 113 413 38 HOH HOH . G 5 HOH B 114 414 5 HOH HOH . G 5 HOH B 115 415 112 HOH HOH . G 5 HOH B 116 416 7 HOH HOH . G 5 HOH B 117 417 44 HOH HOH . G 5 HOH B 118 418 140 HOH HOH . G 5 HOH B 119 419 22 HOH HOH . G 5 HOH B 120 420 15 HOH HOH . G 5 HOH B 121 421 120 HOH HOH . G 5 HOH B 122 422 53 HOH HOH . G 5 HOH B 123 423 69 HOH HOH . G 5 HOH B 124 424 57 HOH HOH . G 5 HOH B 125 425 257 HOH HOH . G 5 HOH B 126 426 54 HOH HOH . G 5 HOH B 127 427 17 HOH HOH . G 5 HOH B 128 428 41 HOH HOH . G 5 HOH B 129 429 19 HOH HOH . G 5 HOH B 130 430 115 HOH HOH . G 5 HOH B 131 431 30 HOH HOH . G 5 HOH B 132 432 263 HOH HOH . G 5 HOH B 133 433 103 HOH HOH . G 5 HOH B 134 434 114 HOH HOH . G 5 HOH B 135 435 36 HOH HOH . G 5 HOH B 136 436 266 HOH HOH . G 5 HOH B 137 437 107 HOH HOH . G 5 HOH B 138 438 133 HOH HOH . G 5 HOH B 139 439 23 HOH HOH . G 5 HOH B 140 440 21 HOH HOH . G 5 HOH B 141 441 98 HOH HOH . G 5 HOH B 142 442 13 HOH HOH . G 5 HOH B 143 443 31 HOH HOH . G 5 HOH B 144 444 104 HOH HOH . G 5 HOH B 145 445 166 HOH HOH . G 5 HOH B 146 446 127 HOH HOH . G 5 HOH B 147 447 14 HOH HOH . G 5 HOH B 148 448 131 HOH HOH . G 5 HOH B 149 449 270 HOH HOH . G 5 HOH B 150 450 205 HOH HOH . G 5 HOH B 151 451 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 -50.888 -16.946 -32.756 1 33.15 ? C1 EDO 204 B 1 HETATM 2 O O1 EDO . . . E 2 -49.505 -16.56 -32.697 1 30.3 ? O1 EDO 204 B 1 HETATM 3 C C2 EDO . . . E 2 -51.553 -17.204 -31.467 1 33.17 ? C2 EDO 204 B 1 HETATM 4 O O2 EDO . . . E 2 -51.275 -16.208 -30.497 1 39.78 ? O2 EDO 204 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #