data_7HMG # _model_server_result.job_id ULFNcUyPrDFk3TbkvE_AFA _model_server_result.datetime_utc '2025-01-25 07:38:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7hmg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7HMG # _exptl.entry_id 7HMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.261 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,4-dimethyl-6-(piperazin-1-yl)pyrimidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7HMG _cell.length_a 95.53 _cell.length_b 95.53 _cell.length_c 45.761 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N4' _chem_comp.formula_weight 192.261 _chem_comp.id WKS _chem_comp.mon_nstd_flag . _chem_comp.name 2,4-dimethyl-6-(piperazin-1-yl)pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C06 WKS sing 389 n n C06 N05 WKS doub 390 n y C06 N08 WKS sing 391 n y N05 C04 WKS sing 392 n y N08 C02 WKS doub 393 n y C10 C11 WKS sing 394 n n C10 N09 WKS sing 395 n n C04 N09 WKS sing 396 n n C04 C03 WKS doub 397 n y C11 N12 WKS sing 398 n n N09 C14 WKS sing 399 n n C02 C03 WKS sing 400 n y C02 C01 WKS sing 401 n n N12 C13 WKS sing 402 n n C14 C13 WKS sing 403 n n C10 H1 WKS sing 404 n n C10 H2 WKS sing 405 n n N12 H3 WKS sing 406 n n C13 H5 WKS sing 407 n n C13 H6 WKS sing 408 n n C01 H7 WKS sing 409 n n C01 H8 WKS sing 410 n n C01 H9 WKS sing 411 n n C03 H10 WKS sing 412 n n C07 H11 WKS sing 413 n n C07 H12 WKS sing 414 n n C07 H13 WKS sing 415 n n C11 H14 WKS sing 416 n n C11 H15 WKS sing 417 n n C14 H16 WKS sing 418 n n C14 H17 WKS sing 419 n n # _atom_sites.entry_id 7HMG _atom_sites.fract_transf_matrix[1][1] 0.010468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO B 1 201 202 EDO EDO . C 3 WKS B 1 202 302 WKS LIG . D 2 EDO B 1 203 303 EDO EDO . E 2 EDO B 1 204 305 EDO EDO . F 4 SO4 B 1 205 1 SO4 SO4 . G 5 HOH B 1 301 107 HOH HOH . G 5 HOH B 2 302 11 HOH HOH . G 5 HOH B 3 303 12 HOH HOH . G 5 HOH B 4 304 1 HOH HOH . G 5 HOH B 5 305 2 HOH HOH . G 5 HOH B 6 306 26 HOH HOH . G 5 HOH B 7 307 16 HOH HOH . G 5 HOH B 8 308 27 HOH HOH . G 5 HOH B 9 309 184 HOH HOH . G 5 HOH B 10 310 21 HOH HOH . G 5 HOH B 11 311 31 HOH HOH . G 5 HOH B 12 312 33 HOH HOH . G 5 HOH B 13 313 281 HOH HOH . G 5 HOH B 14 314 102 HOH HOH . G 5 HOH B 15 315 40 HOH HOH . G 5 HOH B 16 316 25 HOH HOH . G 5 HOH B 17 317 99 HOH HOH . G 5 HOH B 18 318 129 HOH HOH . G 5 HOH B 19 319 90 HOH HOH . G 5 HOH B 20 320 32 HOH HOH . G 5 HOH B 21 321 27 HOH HOH . G 5 HOH B 22 322 11 HOH HOH . G 5 HOH B 23 323 100 HOH HOH . G 5 HOH B 24 324 63 HOH HOH . G 5 HOH B 25 325 5 HOH HOH . G 5 HOH B 26 326 34 HOH HOH . G 5 HOH B 27 327 51 HOH HOH . G 5 HOH B 28 328 95 HOH HOH . G 5 HOH B 29 329 39 HOH HOH . G 5 HOH B 30 330 62 HOH HOH . G 5 HOH B 31 331 4 HOH HOH . G 5 HOH B 32 332 10 HOH HOH . G 5 HOH B 33 333 18 HOH HOH . G 5 HOH B 34 334 22 HOH HOH . G 5 HOH B 35 335 29 HOH HOH . G 5 HOH B 36 336 55 HOH HOH . G 5 HOH B 37 337 20 HOH HOH . G 5 HOH B 38 338 7 HOH HOH . G 5 HOH B 39 339 2 HOH HOH . G 5 HOH B 40 340 133 HOH HOH . G 5 HOH B 41 341 68 HOH HOH . G 5 HOH B 42 342 80 HOH HOH . G 5 HOH B 43 343 50 HOH HOH . G 5 HOH B 44 344 214 HOH HOH . G 5 HOH B 45 345 70 HOH HOH . G 5 HOH B 46 346 36 HOH HOH . G 5 HOH B 47 347 43 HOH HOH . G 5 HOH B 48 348 26 HOH HOH . G 5 HOH B 49 349 16 HOH HOH . G 5 HOH B 50 350 66 HOH HOH . G 5 HOH B 51 351 89 HOH HOH . G 5 HOH B 52 352 29 HOH HOH . G 5 HOH B 53 353 58 HOH HOH . G 5 HOH B 54 354 6 HOH HOH . G 5 HOH B 55 355 76 HOH HOH . G 5 HOH B 56 356 86 HOH HOH . G 5 HOH B 57 357 72 HOH HOH . G 5 HOH B 58 358 156 HOH HOH . G 5 HOH B 59 359 10 HOH HOH . G 5 HOH B 60 360 15 HOH HOH . G 5 HOH B 61 361 19 HOH HOH . G 5 HOH B 62 362 33 HOH HOH . G 5 HOH B 63 363 211 HOH HOH . G 5 HOH B 64 364 82 HOH HOH . G 5 HOH B 65 365 126 HOH HOH . G 5 HOH B 66 366 267 HOH HOH . G 5 HOH B 67 367 197 HOH HOH . G 5 HOH B 68 368 47 HOH HOH . G 5 HOH B 69 369 41 HOH HOH . G 5 HOH B 70 370 40 HOH HOH . G 5 HOH B 71 371 81 HOH HOH . G 5 HOH B 72 372 1 HOH HOH . G 5 HOH B 73 373 137 HOH HOH . G 5 HOH B 74 374 304 HOH HOH . G 5 HOH B 75 375 73 HOH HOH . G 5 HOH B 76 376 172 HOH HOH . G 5 HOH B 77 377 61 HOH HOH . G 5 HOH B 78 378 59 HOH HOH . G 5 HOH B 79 379 85 HOH HOH . G 5 HOH B 80 380 13 HOH HOH . G 5 HOH B 81 381 154 HOH HOH . G 5 HOH B 82 382 3 HOH HOH . G 5 HOH B 83 383 4 HOH HOH . G 5 HOH B 84 384 116 HOH HOH . G 5 HOH B 85 385 71 HOH HOH . G 5 HOH B 86 386 17 HOH HOH . G 5 HOH B 87 387 157 HOH HOH . G 5 HOH B 88 388 8 HOH HOH . G 5 HOH B 89 389 264 HOH HOH . G 5 HOH B 90 390 97 HOH HOH . G 5 HOH B 91 391 24 HOH HOH . G 5 HOH B 92 392 32 HOH HOH . G 5 HOH B 93 393 3 HOH HOH . G 5 HOH B 94 394 125 HOH HOH . G 5 HOH B 95 395 93 HOH HOH . G 5 HOH B 96 396 60 HOH HOH . G 5 HOH B 97 397 45 HOH HOH . G 5 HOH B 98 398 303 HOH HOH . G 5 HOH B 99 399 25 HOH HOH . G 5 HOH B 100 400 14 HOH HOH . G 5 HOH B 101 401 257 HOH HOH . G 5 HOH B 102 402 36 HOH HOH . G 5 HOH B 103 403 20 HOH HOH . G 5 HOH B 104 404 39 HOH HOH . G 5 HOH B 105 405 46 HOH HOH . G 5 HOH B 106 406 56 HOH HOH . G 5 HOH B 107 407 48 HOH HOH . G 5 HOH B 108 408 8 HOH HOH . G 5 HOH B 109 409 49 HOH HOH . G 5 HOH B 110 410 23 HOH HOH . G 5 HOH B 111 411 12 HOH HOH . G 5 HOH B 112 412 140 HOH HOH . G 5 HOH B 113 413 57 HOH HOH . G 5 HOH B 114 414 64 HOH HOH . G 5 HOH B 115 415 9 HOH HOH . G 5 HOH B 116 416 7 HOH HOH . G 5 HOH B 117 417 30 HOH HOH . G 5 HOH B 118 418 69 HOH HOH . G 5 HOH B 119 419 42 HOH HOH . G 5 HOH B 120 420 15 HOH HOH . G 5 HOH B 121 421 35 HOH HOH . G 5 HOH B 122 422 44 HOH HOH . G 5 HOH B 123 423 103 HOH HOH . G 5 HOH B 124 424 22 HOH HOH . G 5 HOH B 125 425 38 HOH HOH . G 5 HOH B 126 426 37 HOH HOH . G 5 HOH B 127 427 54 HOH HOH . G 5 HOH B 128 428 53 HOH HOH . G 5 HOH B 129 429 41 HOH HOH . G 5 HOH B 130 430 18 HOH HOH . G 5 HOH B 131 431 263 HOH HOH . G 5 HOH B 132 432 34 HOH HOH . G 5 HOH B 133 433 19 HOH HOH . G 5 HOH B 134 434 30 HOH HOH . G 5 HOH B 135 435 112 HOH HOH . G 5 HOH B 136 436 266 HOH HOH . G 5 HOH B 137 437 114 HOH HOH . G 5 HOH B 138 438 115 HOH HOH . G 5 HOH B 139 439 38 HOH HOH . G 5 HOH B 140 440 21 HOH HOH . G 5 HOH B 141 441 23 HOH HOH . G 5 HOH B 142 442 13 HOH HOH . G 5 HOH B 143 443 98 HOH HOH . G 5 HOH B 144 444 104 HOH HOH . G 5 HOH B 145 445 127 HOH HOH . G 5 HOH B 146 446 166 HOH HOH . G 5 HOH B 147 447 14 HOH HOH . G 5 HOH B 148 448 131 HOH HOH . G 5 HOH B 149 449 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 WKS . . . C 3 -42.472 -14.75 -17.735 0.58 25.15 ? C10 WKS 202 B 1 HETATM 2 N N12 WKS . . . C 3 -44.324 -16.187 -18.462 0.58 27.22 ? N12 WKS 202 B 1 HETATM 3 C C13 WKS . . . C 3 -43.615 -16.471 -19.705 0.58 26.9 ? C13 WKS 202 B 1 HETATM 4 C C01 WKS . . . C 3 -37.987 -11.887 -18.051 0.58 15.49 ? C01 WKS 202 B 1 HETATM 5 C C02 WKS . . . C 3 -38.758 -12.887 -18.857 0.58 17.31 ? C02 WKS 202 B 1 HETATM 6 C C03 WKS . . . C 3 -39.984 -13.409 -18.471 0.58 18.33 ? C03 WKS 202 B 1 HETATM 7 C C04 WKS . . . C 3 -40.611 -14.335 -19.33 0.58 20.19 ? C04 WKS 202 B 1 HETATM 8 C C06 WKS . . . C 3 -38.844 -14.132 -20.784 0.58 18.08 ? C06 WKS 202 B 1 HETATM 9 C C07 WKS . . . C 3 -38.19 -14.522 -22.065 0.58 18.46 ? C07 WKS 202 B 1 HETATM 10 C C11 WKS . . . C 3 -43.37 -15.922 -17.389 0.58 26.1 ? C11 WKS 202 B 1 HETATM 11 C C14 WKS . . . C 3 -42.762 -15.286 -20.105 0.58 26 ? C14 WKS 202 B 1 HETATM 12 N N05 WKS . . . C 3 -40.018 -14.695 -20.482 0.58 20.23 ? N05 WKS 202 B 1 HETATM 13 N N08 WKS . . . C 3 -38.21 -13.254 -20.018 0.58 16.66 ? N08 WKS 202 B 1 HETATM 14 N N09 WKS . . . C 3 -41.821 -14.948 -19.034 0.58 23.76 ? N09 WKS 202 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #