data_7HML # _model_server_result.job_id o92WR8bqwAlac9zB7uo30A _model_server_result.datetime_utc '2024-12-26 14:13:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7hml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7HML # _exptl.entry_id 7HML _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.215 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(5-amino-1,3-dihydro-2H-isoindol-2-yl)ethan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7HML _cell.length_a 95.522 _cell.length_b 95.522 _cell.length_c 45.692 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HML _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N2 O' _chem_comp.formula_weight 176.215 _chem_comp.id X1J _chem_comp.mon_nstd_flag . _chem_comp.name 1-(5-amino-1,3-dihydro-2H-isoindol-2-yl)ethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C3 X1J sing 389 n n C3 C2 X1J doub 390 n y C3 C4 X1J sing 391 n y C2 C1 X1J sing 392 n y C4 C5 X1J doub 393 n y C1 C6 X1J doub 394 n y C5 C6 X1J sing 395 n y C5 C7 X1J sing 396 n n C6 C8 X1J sing 397 n n C7 N1 X1J sing 398 n n C8 N1 X1J sing 399 n n N1 C9 X1J sing 400 n n C9 O1 X1J doub 401 n n C9 C10 X1J sing 402 n n C4 H3 X1J sing 403 n n C7 H4 X1J sing 404 n n C7 H5 X1J sing 405 n n C8 H6 X1J sing 406 n n C8 H7 X1J sing 407 n n C10 H10 X1J sing 408 n n C10 H11 X1J sing 409 n n C10 H12 X1J sing 410 n n N2 H9 X1J sing 411 n n N2 H8 X1J sing 412 n n C1 H1 X1J sing 413 n n C2 H2 X1J sing 414 n n # _atom_sites.entry_id 7HML _atom_sites.fract_transf_matrix[1][1] 0.010469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010469 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X1J B 1 201 302 X1J LIG . C 3 EDO B 1 202 303 EDO EDO . D 3 EDO B 1 203 305 EDO EDO . E 4 SO4 B 1 204 1 SO4 SO4 . F 5 HOH B 1 301 63 HOH HOH . F 5 HOH B 2 302 40 HOH HOH . F 5 HOH B 3 303 27 HOH HOH . F 5 HOH B 4 304 129 HOH HOH . F 5 HOH B 5 305 99 HOH HOH . F 5 HOH B 6 306 25 HOH HOH . F 5 HOH B 7 307 100 HOH HOH . F 5 HOH B 8 308 95 HOH HOH . F 5 HOH B 9 309 66 HOH HOH . F 5 HOH B 10 310 6 HOH HOH . F 5 HOH B 11 311 28 HOH HOH . F 5 HOH B 12 312 22 HOH HOH . F 5 HOH B 13 313 126 HOH HOH . F 5 HOH B 14 314 59 HOH HOH . F 5 HOH B 15 315 9 HOH HOH . F 5 HOH B 16 316 1 HOH HOH . F 5 HOH B 17 317 4 HOH HOH . F 5 HOH B 18 318 13 HOH HOH . F 5 HOH B 19 319 304 HOH HOH . F 5 HOH B 20 320 3 HOH HOH . F 5 HOH B 21 321 8 HOH HOH . F 5 HOH B 22 322 25 HOH HOH . F 5 HOH B 23 323 85 HOH HOH . F 5 HOH B 24 324 24 HOH HOH . F 5 HOH B 25 325 46 HOH HOH . F 5 HOH B 26 326 23 HOH HOH . F 5 HOH B 27 327 30 HOH HOH . F 5 HOH B 28 328 120 HOH HOH . F 5 HOH B 29 329 41 HOH HOH . F 5 HOH B 30 330 53 HOH HOH . F 5 HOH B 31 331 5 HOH HOH . F 5 HOH B 32 332 263 HOH HOH . F 5 HOH B 33 333 107 HOH HOH . F 5 HOH B 34 334 166 HOH HOH . F 5 HOH B 35 335 205 HOH HOH . F 5 HOH B 36 336 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 X1J . . . B 2 -47.083 -6.186 -27.195 0.59 34.88 ? C4 X1J 201 B 1 HETATM 2 C C5 X1J . . . B 2 -46.645 -7.416 -27.662 0.59 35.97 ? C5 X1J 201 B 1 HETATM 3 C C6 X1J . . . B 2 -45.485 -7.508 -28.425 0.59 35.4 ? C6 X1J 201 B 1 HETATM 4 C C7 X1J . . . B 2 -47.259 -8.77 -27.473 0.59 36.01 ? C7 X1J 201 B 1 HETATM 5 C C8 X1J . . . B 2 -45.232 -8.935 -28.819 0.59 36.12 ? C8 X1J 201 B 1 HETATM 6 C C9 X1J . . . B 2 -47.043 -10.662 -29.065 0.59 40.65 ? C9 X1J 201 B 1 HETATM 7 C C10 X1J . . . B 2 -46.591 -10.995 -30.454 0.59 39.74 ? C10 X1J 201 B 1 HETATM 8 N N1 X1J . . . B 2 -46.528 -9.552 -28.485 0.59 38.03 ? N1 X1J 201 B 1 HETATM 9 N N2 X1J . . . B 2 -46.764 -3.799 -27.044 0.59 34.12 ? N2 X1J 201 B 1 HETATM 10 C C3 X1J . . . B 2 -46.34 -5.043 -27.504 0.59 33.64 ? C3 X1J 201 B 1 HETATM 11 C C1 X1J . . . B 2 -44.745 -6.373 -28.732 0.59 33.88 ? C1 X1J 201 B 1 HETATM 12 C C2 X1J . . . B 2 -45.176 -5.146 -28.27 0.59 32.34 ? C2 X1J 201 B 1 HETATM 13 O O1 X1J . . . B 2 -47.851 -11.366 -28.463 0.59 42.43 ? O1 X1J 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #