data_7HMS # _model_server_result.job_id -o3sg8u4bMfTDvWy2ClvhQ _model_server_result.datetime_utc '2024-11-29 12:49:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7hms # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7HMS # _exptl.entry_id 7HMS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 210.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(methylsulfonyl)methyl]-1H-benzimidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7HMS _cell.length_a 95.442 _cell.length_b 95.442 _cell.length_c 45.856 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H10 N2 O2 S' _chem_comp.formula_weight 210.253 _chem_comp.id T6J _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(methylsulfonyl)methyl]-1H-benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C S T6J sing 303 n n O S T6J doub 304 n n S O1 T6J doub 305 n n C1 S T6J sing 306 n n C2 C1 T6J sing 307 n n C2 N T6J doub 308 n y N C3 T6J sing 309 n y C3 C4 T6J sing 310 n y C4 C5 T6J doub 311 n y C5 C6 T6J sing 312 n y C6 C7 T6J doub 313 n y C7 C8 T6J sing 314 n y C3 C8 T6J doub 315 n y C8 N1 T6J sing 316 n y N1 C2 T6J sing 317 n y N1 H9 T6J sing 318 n n C4 H5 T6J sing 319 n n C5 H6 T6J sing 320 n n C6 H7 T6J sing 321 n n C7 H8 T6J sing 322 n n C H1 T6J sing 323 n n C H T6J sing 324 n n C H2 T6J sing 325 n n C1 H4 T6J sing 326 n n C1 H3 T6J sing 327 n n # _atom_sites.entry_id 7HMS _atom_sites.fract_transf_matrix[1][1] 0.010478 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T6J B 1 201 302 T6J LIG . C 3 EDO B 1 202 305 EDO EDO . D 4 SO4 B 1 203 1 SO4 SO4 . E 5 HOH B 1 301 107 HOH HOH . E 5 HOH B 2 302 11 HOH HOH . E 5 HOH B 3 303 29 HOH HOH . E 5 HOH B 4 304 2 HOH HOH . E 5 HOH B 5 305 12 HOH HOH . E 5 HOH B 6 306 26 HOH HOH . E 5 HOH B 7 307 33 HOH HOH . E 5 HOH B 8 308 99 HOH HOH . E 5 HOH B 9 309 9 HOH HOH . E 5 HOH B 10 310 1 HOH HOH . E 5 HOH B 11 311 21 HOH HOH . E 5 HOH B 12 312 40 HOH HOH . E 5 HOH B 13 313 27 HOH HOH . E 5 HOH B 14 314 102 HOH HOH . E 5 HOH B 15 315 4 HOH HOH . E 5 HOH B 16 316 63 HOH HOH . E 5 HOH B 17 317 51 HOH HOH . E 5 HOH B 18 318 16 HOH HOH . E 5 HOH B 19 319 95 HOH HOH . E 5 HOH B 20 320 90 HOH HOH . E 5 HOH B 21 321 25 HOH HOH . E 5 HOH B 22 322 5 HOH HOH . E 5 HOH B 23 323 264 HOH HOH . E 5 HOH B 24 324 34 HOH HOH . E 5 HOH B 25 325 70 HOH HOH . E 5 HOH B 26 326 31 HOH HOH . E 5 HOH B 27 327 10 HOH HOH . E 5 HOH B 28 328 11 HOH HOH . E 5 HOH B 29 329 27 HOH HOH . E 5 HOH B 30 330 129 HOH HOH . E 5 HOH B 31 331 80 HOH HOH . E 5 HOH B 32 332 16 HOH HOH . E 5 HOH B 33 333 36 HOH HOH . E 5 HOH B 34 334 39 HOH HOH . E 5 HOH B 35 335 66 HOH HOH . E 5 HOH B 36 336 100 HOH HOH . E 5 HOH B 37 337 26 HOH HOH . E 5 HOH B 38 338 22 HOH HOH . E 5 HOH B 39 339 184 HOH HOH . E 5 HOH B 40 340 72 HOH HOH . E 5 HOH B 41 341 214 HOH HOH . E 5 HOH B 42 342 20 HOH HOH . E 5 HOH B 43 343 18 HOH HOH . E 5 HOH B 44 344 68 HOH HOH . E 5 HOH B 45 345 28 HOH HOH . E 5 HOH B 46 346 7 HOH HOH . E 5 HOH B 47 347 2 HOH HOH . E 5 HOH B 48 348 6 HOH HOH . E 5 HOH B 49 349 58 HOH HOH . E 5 HOH B 50 350 50 HOH HOH . E 5 HOH B 51 351 55 HOH HOH . E 5 HOH B 52 352 59 HOH HOH . E 5 HOH B 53 353 137 HOH HOH . E 5 HOH B 54 354 1 HOH HOH . E 5 HOH B 55 355 10 HOH HOH . E 5 HOH B 56 356 29 HOH HOH . E 5 HOH B 57 357 62 HOH HOH . E 5 HOH B 58 358 3 HOH HOH . E 5 HOH B 59 359 17 HOH HOH . E 5 HOH B 60 360 267 HOH HOH . E 5 HOH B 61 361 126 HOH HOH . E 5 HOH B 62 362 81 HOH HOH . E 5 HOH B 63 363 86 HOH HOH . E 5 HOH B 64 364 172 HOH HOH . E 5 HOH B 65 365 19 HOH HOH . E 5 HOH B 66 366 8 HOH HOH . E 5 HOH B 67 367 85 HOH HOH . E 5 HOH B 68 368 76 HOH HOH . E 5 HOH B 69 369 33 HOH HOH . E 5 HOH B 70 370 157 HOH HOH . E 5 HOH B 71 371 4 HOH HOH . E 5 HOH B 72 372 304 HOH HOH . E 5 HOH B 73 373 47 HOH HOH . E 5 HOH B 74 374 15 HOH HOH . E 5 HOH B 75 375 61 HOH HOH . E 5 HOH B 76 376 89 HOH HOH . E 5 HOH B 77 377 14 HOH HOH . E 5 HOH B 78 378 13 HOH HOH . E 5 HOH B 79 379 43 HOH HOH . E 5 HOH B 80 380 32 HOH HOH . E 5 HOH B 81 381 71 HOH HOH . E 5 HOH B 82 382 93 HOH HOH . E 5 HOH B 83 383 3 HOH HOH . E 5 HOH B 84 384 25 HOH HOH . E 5 HOH B 85 385 116 HOH HOH . E 5 HOH B 86 386 48 HOH HOH . E 5 HOH B 87 387 211 HOH HOH . E 5 HOH B 88 388 154 HOH HOH . E 5 HOH B 89 389 32 HOH HOH . E 5 HOH B 90 390 156 HOH HOH . E 5 HOH B 91 391 24 HOH HOH . E 5 HOH B 92 392 257 HOH HOH . E 5 HOH B 93 393 73 HOH HOH . E 5 HOH B 94 394 82 HOH HOH . E 5 HOH B 95 395 303 HOH HOH . E 5 HOH B 96 396 45 HOH HOH . E 5 HOH B 97 397 103 HOH HOH . E 5 HOH B 98 398 281 HOH HOH . E 5 HOH B 99 399 57 HOH HOH . E 5 HOH B 100 400 22 HOH HOH . E 5 HOH B 101 401 64 HOH HOH . E 5 HOH B 102 402 23 HOH HOH . E 5 HOH B 103 403 8 HOH HOH . E 5 HOH B 104 404 125 HOH HOH . E 5 HOH B 105 405 60 HOH HOH . E 5 HOH B 106 406 56 HOH HOH . E 5 HOH B 107 407 5 HOH HOH . E 5 HOH B 108 408 42 HOH HOH . E 5 HOH B 109 409 20 HOH HOH . E 5 HOH B 110 410 97 HOH HOH . E 5 HOH B 111 411 12 HOH HOH . E 5 HOH B 112 412 7 HOH HOH . E 5 HOH B 113 413 49 HOH HOH . E 5 HOH B 114 414 54 HOH HOH . E 5 HOH B 115 415 69 HOH HOH . E 5 HOH B 116 416 38 HOH HOH . E 5 HOH B 117 417 120 HOH HOH . E 5 HOH B 118 418 15 HOH HOH . E 5 HOH B 119 419 140 HOH HOH . E 5 HOH B 120 420 30 HOH HOH . E 5 HOH B 121 421 18 HOH HOH . E 5 HOH B 122 422 263 HOH HOH . E 5 HOH B 123 423 53 HOH HOH . E 5 HOH B 124 424 41 HOH HOH . E 5 HOH B 125 425 197 HOH HOH . E 5 HOH B 126 426 44 HOH HOH . E 5 HOH B 127 427 19 HOH HOH . E 5 HOH B 128 428 133 HOH HOH . E 5 HOH B 129 429 112 HOH HOH . E 5 HOH B 130 430 30 HOH HOH . E 5 HOH B 131 431 266 HOH HOH . E 5 HOH B 132 432 114 HOH HOH . E 5 HOH B 133 433 115 HOH HOH . E 5 HOH B 134 434 23 HOH HOH . E 5 HOH B 135 435 21 HOH HOH . E 5 HOH B 136 436 13 HOH HOH . E 5 HOH B 137 437 98 HOH HOH . E 5 HOH B 138 438 46 HOH HOH . E 5 HOH B 139 439 205 HOH HOH . E 5 HOH B 140 440 104 HOH HOH . E 5 HOH B 141 441 166 HOH HOH . E 5 HOH B 142 442 127 HOH HOH . E 5 HOH B 143 443 14 HOH HOH . E 5 HOH B 144 444 270 HOH HOH . E 5 HOH B 145 445 131 HOH HOH . E 5 HOH B 146 446 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 T6J . . . B 2 -45.524 -5.171 -26.734 0.36 18.39 ? N1 T6J 201 B 1 HETATM 2 C C4 T6J . . . B 2 -42.458 -6.534 -27.962 0.36 18.1 ? C4 T6J 201 B 1 HETATM 3 C C5 T6J . . . B 2 -42.835 -7.7 -28.633 0.36 18.24 ? C5 T6J 201 B 1 HETATM 4 C C6 T6J . . . B 2 -44.177 -8.083 -28.692 0.36 18.54 ? C6 T6J 201 B 1 HETATM 5 C C7 T6J . . . B 2 -45.152 -7.298 -28.092 0.36 18.46 ? C7 T6J 201 B 1 HETATM 6 C C8 T6J . . . B 2 -44.784 -6.11 -27.406 0.36 18.35 ? C8 T6J 201 B 1 HETATM 7 N N T6J . . . B 2 -43.451 -4.575 -26.623 0.36 18.92 ? N T6J 201 B 1 HETATM 8 C C T6J . . . B 2 -46.463 -4.448 -23.205 0.36 18.18 ? C T6J 201 B 1 HETATM 9 O O T6J . . . B 2 -43.888 -3.992 -23.197 0.36 17.57 ? O T6J 201 B 1 HETATM 10 C C1 T6J . . . B 2 -45.057 -3.008 -25.455 0.36 18.99 ? C1 T6J 201 B 1 HETATM 11 C C2 T6J . . . B 2 -44.689 -4.247 -26.263 0.36 19.18 ? C2 T6J 201 B 1 HETATM 12 C C3 T6J . . . B 2 -43.469 -5.728 -27.337 0.36 18.66 ? C3 T6J 201 B 1 HETATM 13 O O1 T6J . . . B 2 -45.114 -2.133 -22.882 0.36 19.95 ? O1 T6J 201 B 1 HETATM 14 S S T6J . . . B 2 -45.107 -3.369 -23.673 0.36 18.15 ? S T6J 201 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #