data_7HN6 # _model_server_result.job_id xXS-YqAC0-EUN6wPzk442Q _model_server_result.datetime_utc '2024-12-26 12:12:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7hn6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7HN6 # _exptl.entry_id 7HN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.262 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-N,N-dimethyl-2,9-dioxa-6-azaspiro[4.5]decane-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7HN6 _cell.length_a 95.754 _cell.length_b 95.754 _cell.length_c 45.603 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H18 N2 O3' _chem_comp.formula_weight 214.262 _chem_comp.id A1BFR _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-N,N-dimethyl-2,9-dioxa-6-azaspiro[4.5]decane-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 A1BFR sing 1 n n N1 C2 A1BFR sing 2 n n N1 C3 A1BFR sing 3 n n C3 O1 A1BFR doub 4 n n C3 N2 A1BFR sing 5 n n N2 C4 A1BFR sing 6 n n C4 C5 A1BFR sing 7 n n C5 O2 A1BFR sing 8 n n O2 C6 A1BFR sing 9 n n C6 C7 A1BFR sing 10 n n C7 C8 A1BFR sing 11 n n C8 C9 A1BFR sing 12 n n C9 O3 A1BFR sing 13 n n O3 C10 A1BFR sing 14 n n N2 C7 A1BFR sing 15 n n C7 C10 A1BFR sing 16 n n C4 H7 A1BFR sing 17 n n C4 H8 A1BFR sing 18 n n C5 H9 A1BFR sing 19 n n C5 H10 A1BFR sing 20 n n C6 H11 A1BFR sing 21 n n C6 H12 A1BFR sing 22 n n C8 H14 A1BFR sing 23 n n C8 H13 A1BFR sing 24 n n C10 H18 A1BFR sing 25 n n C10 H17 A1BFR sing 26 n n C1 H1 A1BFR sing 27 n n C1 H2 A1BFR sing 28 n n C1 H3 A1BFR sing 29 n n C2 H5 A1BFR sing 30 n n C2 H6 A1BFR sing 31 n n C2 H4 A1BFR sing 32 n n C9 H16 A1BFR sing 33 n n C9 H15 A1BFR sing 34 n n # _atom_sites.entry_id 7HN6 _atom_sites.fract_transf_matrix[1][1] 0.010443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1BFR B 1 301 301 A1BFR LIG . C 3 EPE B 1 302 302 EPE EPE . D 4 EDO B 1 303 305 EDO EDO . E 5 SO4 B 1 304 1 SO4 SO4 . F 6 HOH B 1 401 85 HOH HOH . F 6 HOH B 2 402 12 HOH HOH . F 6 HOH B 3 403 4 HOH HOH . F 6 HOH B 4 404 2 HOH HOH . F 6 HOH B 5 405 11 HOH HOH . F 6 HOH B 6 406 26 HOH HOH . F 6 HOH B 7 407 29 HOH HOH . F 6 HOH B 8 408 1 HOH HOH . F 6 HOH B 9 409 5 HOH HOH . F 6 HOH B 10 410 21 HOH HOH . F 6 HOH B 11 411 33 HOH HOH . F 6 HOH B 12 412 90 HOH HOH . F 6 HOH B 13 413 129 HOH HOH . F 6 HOH B 14 414 25 HOH HOH . F 6 HOH B 15 415 63 HOH HOH . F 6 HOH B 16 416 34 HOH HOH . F 6 HOH B 17 417 62 HOH HOH . F 6 HOH B 18 418 51 HOH HOH . F 6 HOH B 19 419 31 HOH HOH . F 6 HOH B 20 420 16 HOH HOH . F 6 HOH B 21 421 72 HOH HOH . F 6 HOH B 22 422 10 HOH HOH . F 6 HOH B 23 423 120 HOH HOH . F 6 HOH B 24 424 40 HOH HOH . F 6 HOH B 25 425 102 HOH HOH . F 6 HOH B 26 426 89 HOH HOH . F 6 HOH B 27 427 39 HOH HOH . F 6 HOH B 28 428 95 HOH HOH . F 6 HOH B 29 429 27 HOH HOH . F 6 HOH B 30 430 11 HOH HOH . F 6 HOH B 31 431 16 HOH HOH . F 6 HOH B 32 432 36 HOH HOH . F 6 HOH B 33 433 68 HOH HOH . F 6 HOH B 34 434 66 HOH HOH . F 6 HOH B 35 435 100 HOH HOH . F 6 HOH B 36 436 80 HOH HOH . F 6 HOH B 37 437 2 HOH HOH . F 6 HOH B 38 438 99 HOH HOH . F 6 HOH B 39 439 27 HOH HOH . F 6 HOH B 40 440 20 HOH HOH . F 6 HOH B 41 441 70 HOH HOH . F 6 HOH B 42 442 211 HOH HOH . F 6 HOH B 43 443 18 HOH HOH . F 6 HOH B 44 444 15 HOH HOH . F 6 HOH B 45 445 81 HOH HOH . F 6 HOH B 46 446 43 HOH HOH . F 6 HOH B 47 447 22 HOH HOH . F 6 HOH B 48 448 6 HOH HOH . F 6 HOH B 49 449 126 HOH HOH . F 6 HOH B 50 450 58 HOH HOH . F 6 HOH B 51 451 19 HOH HOH . F 6 HOH B 52 452 267 HOH HOH . F 6 HOH B 53 453 26 HOH HOH . F 6 HOH B 54 454 29 HOH HOH . F 6 HOH B 55 455 172 HOH HOH . F 6 HOH B 56 456 7 HOH HOH . F 6 HOH B 57 457 50 HOH HOH . F 6 HOH B 58 458 73 HOH HOH . F 6 HOH B 59 459 137 HOH HOH . F 6 HOH B 60 460 4 HOH HOH . F 6 HOH B 61 461 93 HOH HOH . F 6 HOH B 62 462 10 HOH HOH . F 6 HOH B 63 463 156 HOH HOH . F 6 HOH B 64 464 125 HOH HOH . F 6 HOH B 65 465 76 HOH HOH . F 6 HOH B 66 466 47 HOH HOH . F 6 HOH B 67 467 24 HOH HOH . F 6 HOH B 68 468 3 HOH HOH . F 6 HOH B 69 469 304 HOH HOH . F 6 HOH B 70 470 61 HOH HOH . F 6 HOH B 71 471 86 HOH HOH . F 6 HOH B 72 472 13 HOH HOH . F 6 HOH B 73 473 1 HOH HOH . F 6 HOH B 74 474 71 HOH HOH . F 6 HOH B 75 475 263 HOH HOH . F 6 HOH B 76 476 46 HOH HOH . F 6 HOH B 77 477 33 HOH HOH . F 6 HOH B 78 478 59 HOH HOH . F 6 HOH B 79 479 157 HOH HOH . F 6 HOH B 80 480 303 HOH HOH . F 6 HOH B 81 481 55 HOH HOH . F 6 HOH B 82 482 32 HOH HOH . F 6 HOH B 83 483 64 HOH HOH . F 6 HOH B 84 484 97 HOH HOH . F 6 HOH B 85 485 8 HOH HOH . F 6 HOH B 86 486 8 HOH HOH . F 6 HOH B 87 487 9 HOH HOH . F 6 HOH B 88 488 45 HOH HOH . F 6 HOH B 89 489 82 HOH HOH . F 6 HOH B 90 490 12 HOH HOH . F 6 HOH B 91 491 23 HOH HOH . F 6 HOH B 92 492 42 HOH HOH . F 6 HOH B 93 493 5 HOH HOH . F 6 HOH B 94 494 14 HOH HOH . F 6 HOH B 95 495 60 HOH HOH . F 6 HOH B 96 496 3 HOH HOH . F 6 HOH B 97 497 257 HOH HOH . F 6 HOH B 98 498 264 HOH HOH . F 6 HOH B 99 499 56 HOH HOH . F 6 HOH B 100 500 49 HOH HOH . F 6 HOH B 101 501 25 HOH HOH . F 6 HOH B 102 502 17 HOH HOH . F 6 HOH B 103 503 48 HOH HOH . F 6 HOH B 104 504 31 HOH HOH . F 6 HOH B 105 505 197 HOH HOH . F 6 HOH B 106 506 281 HOH HOH . F 6 HOH B 107 507 112 HOH HOH . F 6 HOH B 108 508 15 HOH HOH . F 6 HOH B 109 509 20 HOH HOH . F 6 HOH B 110 510 7 HOH HOH . F 6 HOH B 111 511 107 HOH HOH . F 6 HOH B 112 512 18 HOH HOH . F 6 HOH B 113 513 30 HOH HOH . F 6 HOH B 114 514 154 HOH HOH . F 6 HOH B 115 515 53 HOH HOH . F 6 HOH B 116 516 140 HOH HOH . F 6 HOH B 117 517 38 HOH HOH . F 6 HOH B 118 518 69 HOH HOH . F 6 HOH B 119 519 57 HOH HOH . F 6 HOH B 120 520 44 HOH HOH . F 6 HOH B 121 521 54 HOH HOH . F 6 HOH B 122 522 19 HOH HOH . F 6 HOH B 123 523 41 HOH HOH . F 6 HOH B 124 524 103 HOH HOH . F 6 HOH B 125 525 22 HOH HOH . F 6 HOH B 126 526 114 HOH HOH . F 6 HOH B 127 527 133 HOH HOH . F 6 HOH B 128 528 30 HOH HOH . F 6 HOH B 129 529 266 HOH HOH . F 6 HOH B 130 530 115 HOH HOH . F 6 HOH B 131 531 13 HOH HOH . F 6 HOH B 132 532 98 HOH HOH . F 6 HOH B 133 533 21 HOH HOH . F 6 HOH B 134 534 23 HOH HOH . F 6 HOH B 135 535 104 HOH HOH . F 6 HOH B 136 536 205 HOH HOH . F 6 HOH B 137 537 127 HOH HOH . F 6 HOH B 138 538 259 HOH HOH . F 6 HOH B 139 539 166 HOH HOH . F 6 HOH B 140 540 131 HOH HOH . F 6 HOH B 141 541 14 HOH HOH . F 6 HOH B 142 542 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1BFR . . . B 2 -46.587 -5.641 -26.968 0.58 23.29 ? N1 A1BFR 301 B 1 HETATM 2 C C4 A1BFR . . . B 2 -44.974 -5.694 -29.433 0.58 21.15 ? C4 A1BFR 301 B 1 HETATM 3 C C5 A1BFR . . . B 2 -43.548 -6.097 -29.685 0.58 20.31 ? C5 A1BFR 301 B 1 HETATM 4 C C6 A1BFR . . . B 2 -43.979 -8.395 -29.422 0.58 19.79 ? C6 A1BFR 301 B 1 HETATM 5 C C7 A1BFR . . . B 2 -45.466 -8.21 -29.181 0.58 21.4 ? C7 A1BFR 301 B 1 HETATM 6 C C8 A1BFR . . . B 2 -45.917 -9.236 -28.103 0.58 22.6 ? C8 A1BFR 301 B 1 HETATM 7 C C10 A1BFR . . . B 2 -46.289 -8.64 -30.406 0.58 23.46 ? C10 A1BFR 301 B 1 HETATM 8 C C1 A1BFR . . . B 2 -47.11 -5.98 -25.64 0.58 24.41 ? C1 A1BFR 301 B 1 HETATM 9 C C2 A1BFR . . . B 2 -45.97 -4.318 -27.057 0.58 24.41 ? C2 A1BFR 301 B 1 HETATM 10 C C3 A1BFR . . . B 2 -46.743 -6.515 -27.941 0.58 22.43 ? C3 A1BFR 301 B 1 HETATM 11 C C9 A1BFR . . . B 2 -46.936 -10.098 -28.803 0.58 22.98 ? C9 A1BFR 301 B 1 HETATM 12 N N2 A1BFR . . . B 2 -45.739 -6.779 -28.799 0.58 21.19 ? N2 A1BFR 301 B 1 HETATM 13 O O1 A1BFR . . . B 2 -47.791 -7.145 -28.036 0.58 25.88 ? O1 A1BFR 301 B 1 HETATM 14 O O2 A1BFR . . . B 2 -43.478 -7.38 -30.29 0.58 19.64 ? O2 A1BFR 301 B 1 HETATM 15 O O3 A1BFR . . . B 2 -46.596 -10.026 -30.182 0.58 25.09 ? O3 A1BFR 301 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #