data_7HNJ # _model_server_result.job_id v4h2AAA1feF_mp7uhkg_kg _model_server_result.datetime_utc '2025-02-27 18:14:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7hnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7HNJ # _exptl.entry_id 7HNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 205.213 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(5-ethyl-1,2,4-oxadiazol-3-yl)methyl]pyridin-2(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7HNJ _cell.length_a 95.373 _cell.length_b 95.373 _cell.length_c 45.819 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H11 N3 O2' _chem_comp.formula_weight 205.213 _chem_comp.id A1AP3 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(5-ethyl-1,2,4-oxadiazol-3-yl)methyl]pyridin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 A1AP3 sing 1 n n C1 C2 A1AP3 sing 2 n n C2 N A1AP3 doub 3 n y N C3 A1AP3 sing 4 n y C3 C4 A1AP3 sing 5 n n C4 N1 A1AP3 sing 6 n n N1 C5 A1AP3 sing 7 n n C5 C6 A1AP3 doub 8 n n C6 C7 A1AP3 sing 9 n n C7 C8 A1AP3 doub 10 n n C8 C9 A1AP3 sing 11 n n N1 C9 A1AP3 sing 12 n n C9 O A1AP3 doub 13 n n N2 C3 A1AP3 doub 14 n y O1 N2 A1AP3 sing 15 n y C2 O1 A1AP3 sing 16 n y C4 H6 A1AP3 sing 17 n n C4 H5 A1AP3 sing 18 n n C5 H7 A1AP3 sing 19 n n C6 H8 A1AP3 sing 20 n n C7 H9 A1AP3 sing 21 n n C8 H10 A1AP3 sing 22 n n C H2 A1AP3 sing 23 n n C H A1AP3 sing 24 n n C H1 A1AP3 sing 25 n n C1 H3 A1AP3 sing 26 n n C1 H4 A1AP3 sing 27 n n # _atom_sites.entry_id 7HNJ _atom_sites.fract_transf_matrix[1][1] 0.010485 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021825 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AP3 B 1 201 201 A1AP3 LIG . C 3 EDO B 1 202 305 EDO EDO . D 4 SO4 B 1 203 1 SO4 SO4 . E 5 EPE B 1 204 202 EPE EPE . F 6 HOH B 1 301 107 HOH HOH . F 6 HOH B 2 302 11 HOH HOH . F 6 HOH B 3 303 33 HOH HOH . F 6 HOH B 4 304 29 HOH HOH . F 6 HOH B 5 305 99 HOH HOH . F 6 HOH B 6 306 9 HOH HOH . F 6 HOH B 7 307 12 HOH HOH . F 6 HOH B 8 308 85 HOH HOH . F 6 HOH B 9 309 184 HOH HOH . F 6 HOH B 10 310 26 HOH HOH . F 6 HOH B 11 311 120 HOH HOH . F 6 HOH B 12 312 51 HOH HOH . F 6 HOH B 13 313 27 HOH HOH . F 6 HOH B 14 314 40 HOH HOH . F 6 HOH B 15 315 16 HOH HOH . F 6 HOH B 16 316 214 HOH HOH . F 6 HOH B 17 317 21 HOH HOH . F 6 HOH B 18 318 1 HOH HOH . F 6 HOH B 19 319 90 HOH HOH . F 6 HOH B 20 320 63 HOH HOH . F 6 HOH B 21 321 11 HOH HOH . F 6 HOH B 22 322 70 HOH HOH . F 6 HOH B 23 323 211 HOH HOH . F 6 HOH B 24 324 172 HOH HOH . F 6 HOH B 25 325 66 HOH HOH . F 6 HOH B 26 326 5 HOH HOH . F 6 HOH B 27 327 102 HOH HOH . F 6 HOH B 28 328 29 HOH HOH . F 6 HOH B 29 329 36 HOH HOH . F 6 HOH B 30 330 4 HOH HOH . F 6 HOH B 31 331 34 HOH HOH . F 6 HOH B 32 332 39 HOH HOH . F 6 HOH B 33 333 93 HOH HOH . F 6 HOH B 34 334 10 HOH HOH . F 6 HOH B 35 335 19 HOH HOH . F 6 HOH B 36 336 27 HOH HOH . F 6 HOH B 37 337 2 HOH HOH . F 6 HOH B 38 338 58 HOH HOH . F 6 HOH B 39 339 68 HOH HOH . F 6 HOH B 40 340 31 HOH HOH . F 6 HOH B 41 341 7 HOH HOH . F 6 HOH B 42 342 80 HOH HOH . F 6 HOH B 43 343 100 HOH HOH . F 6 HOH B 44 344 62 HOH HOH . F 6 HOH B 45 345 10 HOH HOH . F 6 HOH B 46 346 20 HOH HOH . F 6 HOH B 47 347 16 HOH HOH . F 6 HOH B 48 348 267 HOH HOH . F 6 HOH B 49 349 81 HOH HOH . F 6 HOH B 50 350 15 HOH HOH . F 6 HOH B 51 351 25 HOH HOH . F 6 HOH B 52 352 157 HOH HOH . F 6 HOH B 53 353 22 HOH HOH . F 6 HOH B 54 354 18 HOH HOH . F 6 HOH B 55 355 55 HOH HOH . F 6 HOH B 56 356 73 HOH HOH . F 6 HOH B 57 357 72 HOH HOH . F 6 HOH B 58 358 64 HOH HOH . F 6 HOH B 59 359 6 HOH HOH . F 6 HOH B 60 360 61 HOH HOH . F 6 HOH B 61 361 47 HOH HOH . F 6 HOH B 62 362 71 HOH HOH . F 6 HOH B 63 363 50 HOH HOH . F 6 HOH B 64 364 76 HOH HOH . F 6 HOH B 65 365 26 HOH HOH . F 6 HOH B 66 366 4 HOH HOH . F 6 HOH B 67 367 3 HOH HOH . F 6 HOH B 68 368 89 HOH HOH . F 6 HOH B 69 369 1 HOH HOH . F 6 HOH B 70 370 60 HOH HOH . F 6 HOH B 71 371 14 HOH HOH . F 6 HOH B 72 372 59 HOH HOH . F 6 HOH B 73 373 125 HOH HOH . F 6 HOH B 74 374 137 HOH HOH . F 6 HOH B 75 375 304 HOH HOH . F 6 HOH B 76 376 86 HOH HOH . F 6 HOH B 77 377 3 HOH HOH . F 6 HOH B 78 378 43 HOH HOH . F 6 HOH B 79 379 48 HOH HOH . F 6 HOH B 80 380 126 HOH HOH . F 6 HOH B 81 381 263 HOH HOH . F 6 HOH B 82 382 8 HOH HOH . F 6 HOH B 83 383 46 HOH HOH . F 6 HOH B 84 384 112 HOH HOH . F 6 HOH B 85 385 25 HOH HOH . F 6 HOH B 86 386 97 HOH HOH . F 6 HOH B 87 387 281 HOH HOH . F 6 HOH B 88 388 23 HOH HOH . F 6 HOH B 89 389 12 HOH HOH . F 6 HOH B 90 390 42 HOH HOH . F 6 HOH B 91 391 17 HOH HOH . F 6 HOH B 92 392 303 HOH HOH . F 6 HOH B 93 393 49 HOH HOH . F 6 HOH B 94 394 30 HOH HOH . F 6 HOH B 95 395 24 HOH HOH . F 6 HOH B 96 396 32 HOH HOH . F 6 HOH B 97 397 22 HOH HOH . F 6 HOH B 98 398 5 HOH HOH . F 6 HOH B 99 399 13 HOH HOH . F 6 HOH B 100 400 56 HOH HOH . F 6 HOH B 101 401 7 HOH HOH . F 6 HOH B 102 402 54 HOH HOH . F 6 HOH B 103 403 45 HOH HOH . F 6 HOH B 104 404 38 HOH HOH . F 6 HOH B 105 405 33 HOH HOH . F 6 HOH B 106 406 18 HOH HOH . F 6 HOH B 107 407 41 HOH HOH . F 6 HOH B 108 408 8 HOH HOH . F 6 HOH B 109 409 32 HOH HOH . F 6 HOH B 110 410 57 HOH HOH . F 6 HOH B 111 411 20 HOH HOH . F 6 HOH B 112 412 15 HOH HOH . F 6 HOH B 113 413 140 HOH HOH . F 6 HOH B 114 414 53 HOH HOH . F 6 HOH B 115 415 257 HOH HOH . F 6 HOH B 116 416 264 HOH HOH . F 6 HOH B 117 417 69 HOH HOH . F 6 HOH B 118 418 197 HOH HOH . F 6 HOH B 119 419 19 HOH HOH . F 6 HOH B 120 420 154 HOH HOH . F 6 HOH B 121 421 44 HOH HOH . F 6 HOH B 122 422 103 HOH HOH . F 6 HOH B 123 423 266 HOH HOH . F 6 HOH B 124 424 133 HOH HOH . F 6 HOH B 125 425 115 HOH HOH . F 6 HOH B 126 426 114 HOH HOH . F 6 HOH B 127 427 30 HOH HOH . F 6 HOH B 128 428 13 HOH HOH . F 6 HOH B 129 429 21 HOH HOH . F 6 HOH B 130 430 23 HOH HOH . F 6 HOH B 131 431 98 HOH HOH . F 6 HOH B 132 432 82 HOH HOH . F 6 HOH B 133 433 104 HOH HOH . F 6 HOH B 134 434 205 HOH HOH . F 6 HOH B 135 435 259 HOH HOH . F 6 HOH B 136 436 127 HOH HOH . F 6 HOH B 137 437 14 HOH HOH . F 6 HOH B 138 438 131 HOH HOH . F 6 HOH B 139 439 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1AP3 . . . B 2 -45.476 -3.248 -24.816 0.34 23.97 ? N1 A1AP3 201 B 1 HETATM 2 C C4 A1AP3 . . . B 2 -44.327 -3.17 -25.727 0.34 24.41 ? C4 A1AP3 201 B 1 HETATM 3 C C5 A1AP3 . . . B 2 -46.719 -2.956 -25.29 0.34 23.81 ? C5 A1AP3 201 B 1 HETATM 4 C C6 A1AP3 . . . B 2 -47.809 -3.019 -24.502 0.34 23.97 ? C6 A1AP3 201 B 1 HETATM 5 C C7 A1AP3 . . . B 2 -47.656 -3.37 -23.153 0.34 23.61 ? C7 A1AP3 201 B 1 HETATM 6 C C8 A1AP3 . . . B 2 -46.432 -3.66 -22.662 0.34 23.13 ? C8 A1AP3 201 B 1 HETATM 7 N N A1AP3 . . . B 2 -44.852 -5.056 -27.405 0.34 27.81 ? N A1AP3 201 B 1 HETATM 8 C C A1AP3 . . . B 2 -43.398 -8.093 -29.047 0.34 29.5 ? C A1AP3 201 B 1 HETATM 9 O O A1AP3 . . . B 2 -44.114 -3.847 -23.095 0.34 20.8 ? O A1AP3 201 B 1 HETATM 10 C C1 A1AP3 . . . B 2 -44.542 -7.119 -28.829 0.34 29.97 ? C1 A1AP3 201 B 1 HETATM 11 C C2 A1AP3 . . . B 2 -44.174 -6.064 -27.858 0.34 29.07 ? C2 A1AP3 201 B 1 HETATM 12 C C3 A1AP3 . . . B 2 -44.048 -4.412 -26.508 0.34 26.12 ? C3 A1AP3 201 B 1 HETATM 13 C C9 A1AP3 . . . B 2 -45.266 -3.605 -23.48 0.34 22.03 ? C9 A1AP3 201 B 1 HETATM 14 N N2 A1AP3 . . . B 2 -42.917 -5.012 -26.418 0.34 27.43 ? N2 A1AP3 201 B 1 HETATM 15 O O1 A1AP3 . . . B 2 -42.967 -6.119 -27.295 0.34 28.06 ? O1 A1AP3 201 B 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #