data_7I17 # _model_server_result.job_id YSHoJwu_c0omSgzqQ5TTEQ _model_server_result.datetime_utc '2025-06-18 09:10:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7i17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7I17 # _exptl.entry_id 7I17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 181.212 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-benzodioxole-5-carbothioamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7I17 _cell.length_a 67.89 _cell.length_b 99.84 _cell.length_c 103.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7I17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O ASN 221 B ASN 221 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc2 B OD1 ASN 221 B ASN 221 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc3 B O PHE 223 B PHE 223 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc4 B O ASP 263 B ASP 263 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? # _chem_comp.formula 'C8 H7 N O2 S' _chem_comp.formula_weight 181.212 _chem_comp.id TJV _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-benzodioxole-5-carbothioamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C6 TJV doub 315 n n C C1 TJV doub 316 n y C C5 TJV sing 317 n y C1 C2 TJV sing 318 n y C6 C5 TJV sing 319 n n C6 N TJV sing 320 n n C5 C4 TJV doub 321 n y C2 O1 TJV sing 322 n n C2 C3 TJV doub 323 n y C4 C3 TJV sing 324 n y O1 C7 TJV sing 325 n n C3 O TJV sing 326 n n C7 O TJV sing 327 n n C4 H1 TJV sing 328 n n C7 H2 TJV sing 329 n n N H3 TJV sing 330 n n N H4 TJV sing 331 n n C H5 TJV sing 332 n n C1 H6 TJV sing 333 n n C7 H8 TJV sing 334 n n # _atom_sites.entry_id 7I17 _atom_sites.fract_transf_matrix[1][1] 0.01473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009648 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 401 410 CL CL . D 3 TJV A 1 402 501 TJV LIG . E 4 DMS A 1 403 601 DMS DMS . F 5 NA B 1 401 406 NA NA . G 4 DMS B 1 402 501 DMS DMS . H 6 HOH A 1 501 92 HOH HOH . H 6 HOH A 2 502 96 HOH HOH . H 6 HOH A 3 503 87 HOH HOH . H 6 HOH A 4 504 73 HOH HOH . H 6 HOH A 5 505 112 HOH HOH . H 6 HOH A 6 506 115 HOH HOH . H 6 HOH A 7 507 65 HOH HOH . H 6 HOH A 8 508 108 HOH HOH . H 6 HOH A 9 509 28 HOH HOH . H 6 HOH A 10 510 124 HOH HOH . H 6 HOH A 11 511 45 HOH HOH . H 6 HOH A 12 512 82 HOH HOH . H 6 HOH A 13 513 103 HOH HOH . H 6 HOH A 14 514 43 HOH HOH . H 6 HOH A 15 515 20 HOH HOH . H 6 HOH A 16 516 34 HOH HOH . H 6 HOH A 17 517 15 HOH HOH . H 6 HOH A 18 518 84 HOH HOH . H 6 HOH A 19 519 23 HOH HOH . H 6 HOH A 20 520 30 HOH HOH . H 6 HOH A 21 521 100 HOH HOH . H 6 HOH A 22 522 101 HOH HOH . H 6 HOH A 23 523 39 HOH HOH . H 6 HOH A 24 524 44 HOH HOH . H 6 HOH A 25 525 18 HOH HOH . H 6 HOH A 26 526 98 HOH HOH . H 6 HOH A 27 527 5 HOH HOH . H 6 HOH A 28 528 109 HOH HOH . H 6 HOH A 29 529 6 HOH HOH . H 6 HOH A 30 530 99 HOH HOH . H 6 HOH A 31 531 2 HOH HOH . H 6 HOH A 32 532 4 HOH HOH . H 6 HOH A 33 533 123 HOH HOH . H 6 HOH A 34 534 52 HOH HOH . H 6 HOH A 35 535 8 HOH HOH . H 6 HOH A 36 536 89 HOH HOH . H 6 HOH A 37 537 48 HOH HOH . H 6 HOH A 38 538 37 HOH HOH . H 6 HOH A 39 539 31 HOH HOH . H 6 HOH A 40 540 32 HOH HOH . H 6 HOH A 41 541 17 HOH HOH . H 6 HOH A 42 542 61 HOH HOH . H 6 HOH A 43 543 57 HOH HOH . H 6 HOH A 44 544 27 HOH HOH . H 6 HOH A 45 545 80 HOH HOH . H 6 HOH A 46 546 77 HOH HOH . H 6 HOH A 47 547 56 HOH HOH . H 6 HOH A 48 548 25 HOH HOH . H 6 HOH A 49 549 12 HOH HOH . H 6 HOH A 50 550 49 HOH HOH . H 6 HOH A 51 551 42 HOH HOH . H 6 HOH A 52 552 70 HOH HOH . H 6 HOH A 53 553 60 HOH HOH . H 6 HOH A 54 554 35 HOH HOH . H 6 HOH A 55 555 21 HOH HOH . H 6 HOH A 56 556 38 HOH HOH . H 6 HOH A 57 557 13 HOH HOH . H 6 HOH A 58 558 54 HOH HOH . H 6 HOH A 59 559 76 HOH HOH . H 6 HOH A 60 560 97 HOH HOH . H 6 HOH A 61 561 91 HOH HOH . H 6 HOH A 62 562 116 HOH HOH . H 6 HOH A 63 563 47 HOH HOH . H 6 HOH A 64 564 111 HOH HOH . H 6 HOH A 65 565 118 HOH HOH . H 6 HOH A 66 566 46 HOH HOH . H 6 HOH A 67 567 63 HOH HOH . H 6 HOH A 68 568 78 HOH HOH . H 6 HOH A 69 569 102 HOH HOH . H 6 HOH A 70 570 117 HOH HOH . H 6 HOH A 71 571 40 HOH HOH . H 6 HOH A 72 572 64 HOH HOH . H 6 HOH A 73 573 114 HOH HOH . H 6 HOH A 74 574 81 HOH HOH . H 6 HOH A 75 575 86 HOH HOH . H 6 HOH A 76 576 59 HOH HOH . I 6 HOH B 1 501 93 HOH HOH . I 6 HOH B 2 502 122 HOH HOH . I 6 HOH B 3 503 14 HOH HOH . I 6 HOH B 4 504 68 HOH HOH . I 6 HOH B 5 505 74 HOH HOH . I 6 HOH B 6 506 55 HOH HOH . I 6 HOH B 7 507 7 HOH HOH . I 6 HOH B 8 508 110 HOH HOH . I 6 HOH B 9 509 90 HOH HOH . I 6 HOH B 10 510 11 HOH HOH . I 6 HOH B 11 511 66 HOH HOH . I 6 HOH B 12 512 95 HOH HOH . I 6 HOH B 13 513 10 HOH HOH . I 6 HOH B 14 514 105 HOH HOH . I 6 HOH B 15 515 58 HOH HOH . I 6 HOH B 16 516 19 HOH HOH . I 6 HOH B 17 517 3 HOH HOH . I 6 HOH B 18 518 75 HOH HOH . I 6 HOH B 19 519 22 HOH HOH . I 6 HOH B 20 520 71 HOH HOH . I 6 HOH B 21 521 83 HOH HOH . I 6 HOH B 22 522 33 HOH HOH . I 6 HOH B 23 523 29 HOH HOH . I 6 HOH B 24 524 67 HOH HOH . I 6 HOH B 25 525 106 HOH HOH . I 6 HOH B 26 526 85 HOH HOH . I 6 HOH B 27 527 125 HOH HOH . I 6 HOH B 28 528 9 HOH HOH . I 6 HOH B 29 529 26 HOH HOH . I 6 HOH B 30 530 53 HOH HOH . I 6 HOH B 31 531 41 HOH HOH . I 6 HOH B 32 532 119 HOH HOH . I 6 HOH B 33 533 24 HOH HOH . I 6 HOH B 34 534 72 HOH HOH . I 6 HOH B 35 535 104 HOH HOH . I 6 HOH B 36 536 107 HOH HOH . I 6 HOH B 37 537 50 HOH HOH . I 6 HOH B 38 538 16 HOH HOH . I 6 HOH B 39 539 88 HOH HOH . I 6 HOH B 40 540 120 HOH HOH . I 6 HOH B 41 541 62 HOH HOH . I 6 HOH B 42 542 79 HOH HOH . I 6 HOH B 43 543 69 HOH HOH . I 6 HOH B 44 544 51 HOH HOH . I 6 HOH B 45 545 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 TJV . C . D 3 23.434 3.477 -29.438 0.2 35.06 ? C4 TJV 402 A 1 HETATM 2 C C4 TJV . D . D 3 23.434 3.477 -29.438 0.2 35.06 ? C4 TJV 402 A 1 HETATM 3 C C5 TJV . C . D 3 24.843 3.29 -29.654 0.2 34.22 ? C5 TJV 402 A 1 HETATM 4 C C5 TJV . D . D 3 24.843 3.29 -29.654 0.2 34.22 ? C5 TJV 402 A 1 HETATM 5 C C6 TJV . C . D 3 25.354 2.825 -31.003 0.2 31.68 ? C6 TJV 402 A 1 HETATM 6 C C6 TJV . D . D 3 25.354 2.825 -31.003 0.2 31.68 ? C6 TJV 402 A 1 HETATM 7 C C7 TJV . C . D 3 21.86 4.822 -26.505 0.2 38.16 ? C7 TJV 402 A 1 HETATM 8 C C7 TJV . D . D 3 21.86 4.822 -26.505 0.2 38.16 ? C7 TJV 402 A 1 HETATM 9 S S TJV . C . D 3 24.316 2.336 -32.11 0.2 29.38 ? S TJV 402 A 1 HETATM 10 S S TJV . D . D 3 24.316 2.336 -32.11 0.2 29.38 ? S TJV 402 A 1 HETATM 11 N N TJV . C . D 3 26.733 2.789 -31.333 0.2 30.7 ? N TJV 402 A 1 HETATM 12 N N TJV . D . D 3 26.733 2.789 -31.333 0.2 30.7 ? N TJV 402 A 1 HETATM 13 C C TJV . C . D 3 25.701 3.552 -28.572 0.2 35 ? C TJV 402 A 1 HETATM 14 C C TJV . D . D 3 25.701 3.552 -28.572 0.2 35 ? C TJV 402 A 1 HETATM 15 C C3 TJV . C . D 3 23.002 3.901 -28.202 0.2 37.69 ? C3 TJV 402 A 1 HETATM 16 C C3 TJV . D . D 3 23.002 3.901 -28.202 0.2 37.69 ? C3 TJV 402 A 1 HETATM 17 O O TJV . C . D 3 21.697 4.146 -27.764 0.2 38.56 ? O TJV 402 A 1 HETATM 18 O O TJV . D . D 3 21.697 4.146 -27.764 0.2 38.56 ? O TJV 402 A 1 HETATM 19 O O1 TJV . C . D 3 23.174 4.556 -26.018 0.2 38.3 ? O1 TJV 402 A 1 HETATM 20 O O1 TJV . D . D 3 23.174 4.556 -26.018 0.2 38.3 ? O1 TJV 402 A 1 HETATM 21 C C2 TJV . C . D 3 23.892 4.149 -27.141 0.2 36.92 ? C2 TJV 402 A 1 HETATM 22 C C2 TJV . D . D 3 23.892 4.149 -27.141 0.2 36.92 ? C2 TJV 402 A 1 HETATM 23 C C1 TJV . C . D 3 25.239 3.982 -27.295 0.2 36.7 ? C1 TJV 402 A 1 HETATM 24 C C1 TJV . D . D 3 25.239 3.982 -27.295 0.2 36.7 ? C1 TJV 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 24 #