data_7JFP # _model_server_result.job_id DsoySDbuJH9b06vB6kBOgQ _model_server_result.datetime_utc '2025-01-15 22:00:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7JFP # _exptl.entry_id 7JFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JFP _cell.length_a 99.645 _cell.length_b 99.645 _cell.length_c 134.262 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ASN 331 B ASN 331 1_555 B N CME 332 B CME 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C CME 332 B CME 332 1_555 B N ALA 333 B ALA 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 B OD2 ASP 220 B ASP 220 1_555 G MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc2 D O1B GDP . B GDP 401 1_555 G MG MG . B MG 404 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc3 D O1B GDP . B GDP 401 1_555 G MG MG . B MG 404 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc4 D O2B GDP . B GDP 401 1_555 G MG MG . B MG 404 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc5 D O3B GDP . B GDP 401 1_555 G MG MG . B MG 404 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc6 D O3A GDP . B GDP 401 1_555 G MG MG . B MG 404 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc7 D O3A GDP . B GDP 401 1_555 G MG MG . B MG 404 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc8 D O2A GDP . B GDP 401 1_555 G MG MG . B MG 404 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.453 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 195 n n C1 C2 GOL sing 196 n n C1 H11 GOL sing 197 n n C1 H12 GOL sing 198 n n O1 HO1 GOL sing 199 n n C2 O2 GOL sing 200 n n C2 C3 GOL sing 201 n n C2 H2 GOL sing 202 n n O2 HO2 GOL sing 203 n n C3 O3 GOL sing 204 n n C3 H31 GOL sing 205 n n C3 H32 GOL sing 206 n n O3 HO3 GOL sing 207 n n # _atom_sites.entry_id 7JFP _atom_sites.fract_transf_matrix[1][1] 0.010036 _atom_sites.fract_transf_matrix[1][2] 0.005794 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 401 GOL GOL . D 4 GDP B 1 401 401 GDP GDP . E 3 GOL B 1 402 501 GOL GOL . F 3 GOL B 1 403 601 GOL GOL . G 5 MG B 1 404 1 MG MG . H 6 HOH A 1 501 6 HOH HOH . H 6 HOH A 2 502 3 HOH HOH . H 6 HOH A 3 503 4 HOH HOH . I 6 HOH B 1 501 5 HOH HOH . I 6 HOH B 2 502 1 HOH HOH . I 6 HOH B 3 503 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 0.449 35.128 -1.246 1 79.65 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . C 3 0.62 36.291 -1.998 1 83.61 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . C 3 1.378 35.256 -0.029 1 89.26 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . C 3 2.247 36.338 -0.169 1 96.24 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . C 3 0.417 35.382 1.198 1 88.88 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . C 3 -0.223 34.139 1.342 1 82.12 ? O3 GOL 401 A 1 HETATM 7 H H11 GOL . . . C 3 0.673 34.324 -1.741 1 97.05 ? H11 GOL 401 A 1 HETATM 8 H H12 GOL . . . C 3 -0.465 35.007 -0.944 1 97.05 ? H12 GOL 401 A 1 HETATM 9 H H2 GOL . . . C 3 1.945 34.476 0.073 1 108.58 ? H2 GOL 401 A 1 HETATM 10 H HO2 GOL . . . C 3 2.039 36.755 -0.886 1 116.95 ? HO2 GOL 401 A 1 HETATM 11 H H31 GOL . . . C 3 -0.198 36.116 1.042 1 108.13 ? H31 GOL 401 A 1 HETATM 12 H H32 GOL . . . C 3 0.933 35.642 1.977 1 108.13 ? H32 GOL 401 A 1 HETATM 13 H HO3 GOL . . . C 3 -0.746 34.201 2.014 1 100.01 ? HO3 GOL 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 13 #