data_7JG0 # _model_server_result.job_id LC8wNT-xmBPhOpBlFeqchw _model_server_result.datetime_utc '2024-11-29 18:03:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jg0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 7JG0 # _exptl.entry_id 7JG0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 478.542 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-{5-[4-(2-amino-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-6-yl)butyl]thiophene-2-carbonyl}-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JG0 _cell.length_a 75.232 _cell.length_b 75.232 _cell.length_c 99.955 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JG0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 66.636667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H22 N4 O6 S2' _chem_comp.formula_weight 478.542 _chem_comp.id V97 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-{5-[4-(2-amino-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-6-yl)butyl]thiophene-2-carbonyl}-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C2 V97 sing 389 n n N3 C2 V97 sing 390 n n N3 C4 V97 sing 391 n n C2 N1 V97 doub 392 n n O10 C4 V97 doub 393 n n C4 C8 V97 sing 394 n n N1 C9 V97 sing 395 n n C8 C9 V97 doub 396 n y C8 C7 V97 sing 397 n y C9 S5 V97 sing 398 n y C7 C6 V97 doub 399 n y S5 C6 V97 sing 400 n y C6 C30 V97 sing 401 n n C30 C31 V97 sing 402 n n C31 C32 V97 sing 403 n n C32 C33 V97 sing 404 n n C33 C16 V97 sing 405 n n O28 C26 V97 doub 406 n n C16 C15 V97 doub 407 n y C16 S12 V97 sing 408 n y C15 C14 V97 sing 409 n y S12 C13 V97 sing 410 n y C26 O27 V97 sing 411 n n C26 C20 V97 sing 412 n n C14 C13 V97 doub 413 n y C13 C17 V97 sing 414 n n N19 C17 V97 sing 415 n n N19 C20 V97 sing 416 n n C17 O18 V97 doub 417 n n C20 C21 V97 sing 418 n n C22 C21 V97 sing 419 n n C22 C23 V97 sing 420 n n O25 C23 V97 doub 421 n n C23 O24 V97 sing 422 n n C14 H1 V97 sing 423 n n C15 H2 V97 sing 424 n n C20 H3 V97 sing 425 n n C21 H4 V97 sing 426 n n C21 H5 V97 sing 427 n n C22 H6 V97 sing 428 n n C22 H7 V97 sing 429 n n C30 H8 V97 sing 430 n n C30 H9 V97 sing 431 n n C31 H10 V97 sing 432 n n C31 H11 V97 sing 433 n n C32 H12 V97 sing 434 n n C32 H13 V97 sing 435 n n C33 H14 V97 sing 436 n n C33 H15 V97 sing 437 n n C7 H16 V97 sing 438 n n N11 H17 V97 sing 439 n n N11 H18 V97 sing 440 n n N19 H19 V97 sing 441 n n N3 H20 V97 sing 442 n n O24 H21 V97 sing 443 n n O27 H22 V97 sing 444 n n # _atom_sites.entry_id 7JG0 _atom_sites.fract_transf_matrix[1][1] 0.013292 _atom_sites.fract_transf_matrix[1][2] 0.007674 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAR A 1 1101 1100 GAR GAR . C 3 V97 A 1 1102 1200 V97 G12 . D 4 HOH A 1 1201 51 HOH HOH . D 4 HOH A 2 1202 44 HOH HOH . D 4 HOH A 3 1203 41 HOH HOH . D 4 HOH A 4 1204 121 HOH HOH . D 4 HOH A 5 1205 110 HOH HOH . D 4 HOH A 6 1206 118 HOH HOH . D 4 HOH A 7 1207 1 HOH HOH . D 4 HOH A 8 1208 38 HOH HOH . D 4 HOH A 9 1209 42 HOH HOH . D 4 HOH A 10 1210 106 HOH HOH . D 4 HOH A 11 1211 52 HOH HOH . D 4 HOH A 12 1212 30 HOH HOH . D 4 HOH A 13 1213 49 HOH HOH . D 4 HOH A 14 1214 26 HOH HOH . D 4 HOH A 15 1215 103 HOH HOH . D 4 HOH A 16 1216 61 HOH HOH . D 4 HOH A 17 1217 57 HOH HOH . D 4 HOH A 18 1218 34 HOH HOH . D 4 HOH A 19 1219 32 HOH HOH . D 4 HOH A 20 1220 29 HOH HOH . D 4 HOH A 21 1221 54 HOH HOH . D 4 HOH A 22 1222 86 HOH HOH . D 4 HOH A 23 1223 64 HOH HOH . D 4 HOH A 24 1224 67 HOH HOH . D 4 HOH A 25 1225 120 HOH HOH . D 4 HOH A 26 1226 18 HOH HOH . D 4 HOH A 27 1227 62 HOH HOH . D 4 HOH A 28 1228 11 HOH HOH . D 4 HOH A 29 1229 15 HOH HOH . D 4 HOH A 30 1230 113 HOH HOH . D 4 HOH A 31 1231 10 HOH HOH . D 4 HOH A 32 1232 17 HOH HOH . D 4 HOH A 33 1233 72 HOH HOH . D 4 HOH A 34 1234 50 HOH HOH . D 4 HOH A 35 1235 23 HOH HOH . D 4 HOH A 36 1236 14 HOH HOH . D 4 HOH A 37 1237 16 HOH HOH . D 4 HOH A 38 1238 35 HOH HOH . D 4 HOH A 39 1239 5 HOH HOH . D 4 HOH A 40 1240 40 HOH HOH . D 4 HOH A 41 1241 4 HOH HOH . D 4 HOH A 42 1242 92 HOH HOH . D 4 HOH A 43 1243 56 HOH HOH . D 4 HOH A 44 1244 76 HOH HOH . D 4 HOH A 45 1245 39 HOH HOH . D 4 HOH A 46 1246 37 HOH HOH . D 4 HOH A 47 1247 13 HOH HOH . D 4 HOH A 48 1248 80 HOH HOH . D 4 HOH A 49 1249 19 HOH HOH . D 4 HOH A 50 1250 33 HOH HOH . D 4 HOH A 51 1251 9 HOH HOH . D 4 HOH A 52 1252 27 HOH HOH . D 4 HOH A 53 1253 24 HOH HOH . D 4 HOH A 54 1254 48 HOH HOH . D 4 HOH A 55 1255 46 HOH HOH . D 4 HOH A 56 1256 25 HOH HOH . D 4 HOH A 57 1257 22 HOH HOH . D 4 HOH A 58 1258 71 HOH HOH . D 4 HOH A 59 1259 43 HOH HOH . D 4 HOH A 60 1260 104 HOH HOH . D 4 HOH A 61 1261 98 HOH HOH . D 4 HOH A 62 1262 77 HOH HOH . D 4 HOH A 63 1263 107 HOH HOH . D 4 HOH A 64 1264 60 HOH HOH . D 4 HOH A 65 1265 28 HOH HOH . D 4 HOH A 66 1266 75 HOH HOH . D 4 HOH A 67 1267 69 HOH HOH . D 4 HOH A 68 1268 96 HOH HOH . D 4 HOH A 69 1269 3 HOH HOH . D 4 HOH A 70 1270 2 HOH HOH . D 4 HOH A 71 1271 102 HOH HOH . D 4 HOH A 72 1272 45 HOH HOH . D 4 HOH A 73 1273 31 HOH HOH . D 4 HOH A 74 1274 94 HOH HOH . D 4 HOH A 75 1275 53 HOH HOH . D 4 HOH A 76 1276 105 HOH HOH . D 4 HOH A 77 1277 78 HOH HOH . D 4 HOH A 78 1278 123 HOH HOH . D 4 HOH A 79 1279 20 HOH HOH . D 4 HOH A 80 1280 6 HOH HOH . D 4 HOH A 81 1281 84 HOH HOH . D 4 HOH A 82 1282 108 HOH HOH . D 4 HOH A 83 1283 79 HOH HOH . D 4 HOH A 84 1284 55 HOH HOH . D 4 HOH A 85 1285 47 HOH HOH . D 4 HOH A 86 1286 100 HOH HOH . D 4 HOH A 87 1287 101 HOH HOH . D 4 HOH A 88 1288 97 HOH HOH . D 4 HOH A 89 1289 7 HOH HOH . D 4 HOH A 90 1290 88 HOH HOH . D 4 HOH A 91 1291 114 HOH HOH . D 4 HOH A 92 1292 112 HOH HOH . D 4 HOH A 93 1293 70 HOH HOH . D 4 HOH A 94 1294 119 HOH HOH . D 4 HOH A 95 1295 74 HOH HOH . D 4 HOH A 96 1296 12 HOH HOH . D 4 HOH A 97 1297 83 HOH HOH . D 4 HOH A 98 1298 93 HOH HOH . D 4 HOH A 99 1299 63 HOH HOH . D 4 HOH A 100 1300 85 HOH HOH . D 4 HOH A 101 1301 73 HOH HOH . D 4 HOH A 102 1302 36 HOH HOH . D 4 HOH A 103 1303 21 HOH HOH . D 4 HOH A 104 1304 87 HOH HOH . D 4 HOH A 105 1305 124 HOH HOH . D 4 HOH A 106 1306 8 HOH HOH . D 4 HOH A 107 1307 125 HOH HOH . D 4 HOH A 108 1308 89 HOH HOH . D 4 HOH A 109 1309 99 HOH HOH . D 4 HOH A 110 1310 68 HOH HOH . D 4 HOH A 111 1311 81 HOH HOH . D 4 HOH A 112 1312 66 HOH HOH . D 4 HOH A 113 1313 122 HOH HOH . D 4 HOH A 114 1314 91 HOH HOH . D 4 HOH A 115 1315 82 HOH HOH . D 4 HOH A 116 1316 59 HOH HOH . D 4 HOH A 117 1317 58 HOH HOH . D 4 HOH A 118 1318 95 HOH HOH . D 4 HOH A 119 1319 111 HOH HOH . D 4 HOH A 120 1320 109 HOH HOH . D 4 HOH A 121 1321 90 HOH HOH . D 4 HOH A 122 1322 65 HOH HOH . D 4 HOH A 123 1323 115 HOH HOH . D 4 HOH A 124 1324 116 HOH HOH . D 4 HOH A 125 1325 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 V97 . . . C 3 -26.062 11.758 27.107 0.94 25.67 ? C9 V97 1102 A 1 HETATM 2 C C8 V97 . . . C 3 -25.421 12.981 27.078 0.94 28.4 ? C8 V97 1102 A 1 HETATM 3 C C13 V97 . . . C 3 -25.93 10.171 34.361 0.94 52.52 ? C13 V97 1102 A 1 HETATM 4 C C6 V97 . . . C 3 -27.249 13.522 28.468 0.94 34.7 ? C6 V97 1102 A 1 HETATM 5 C C4 V97 . . . C 3 -24.243 13.004 26.305 0.94 34.46 ? C4 V97 1102 A 1 HETATM 6 C C2 V97 . . . C 3 -24.532 10.796 25.79 0.94 36.89 ? C2 V97 1102 A 1 HETATM 7 C C14 V97 . . . C 3 -24.675 10.794 34.235 0.94 42.41 ? C14 V97 1102 A 1 HETATM 8 C C15 V97 . . . C 3 -24.735 12.113 33.685 0.94 39.74 ? C15 V97 1102 A 1 HETATM 9 C C16 V97 . . . C 3 -26.026 12.548 33.37 0.94 42.98 ? C16 V97 1102 A 1 HETATM 10 C C17 V97 . . . C 3 -26.184 8.759 34.873 0.94 55.76 ? C17 V97 1102 A 1 HETATM 11 C C20 V97 . . . C 3 -27.58 6.844 35.232 0.94 59.84 ? C20 V97 1102 A 1 HETATM 12 C C21 V97 . . . C 3 -28.607 6.743 36.356 0.94 66.41 ? C21 V97 1102 A 1 HETATM 13 C C22 V97 . . . C 3 -29.926 7.44 36.047 0.94 75.4 ? C22 V97 1102 A 1 HETATM 14 C C23 V97 . . . C 3 -31.119 6.515 36.293 0.94 87.87 ? C23 V97 1102 A 1 HETATM 15 C C26 V97 . . . C 3 -28.005 6.025 34.01 0.94 61.79 ? C26 V97 1102 A 1 HETATM 16 C C30 V97 . . . C 3 -28.17 14.321 29.334 0.94 41.49 ? C30 V97 1102 A 1 HETATM 17 C C31 V97 . . . C 3 -27.969 13.936 30.807 0.94 42.53 ? C31 V97 1102 A 1 HETATM 18 C C32 V97 . . . C 3 -26.516 13.824 31.256 0.94 48.66 ? C32 V97 1102 A 1 HETATM 19 C C33 V97 . . . C 3 -26.4 13.865 32.783 0.94 47.12 ? C33 V97 1102 A 1 HETATM 20 C C7 V97 . . . C 3 -26.085 14.029 27.853 0.94 25.34 ? C7 V97 1102 A 1 HETATM 21 N N1 V97 . . . C 3 -25.655 10.652 26.489 0.94 32.35 ? N1 V97 1102 A 1 HETATM 22 N N11 V97 . . . C 3 -24.089 9.726 25.152 0.94 32.47 ? N11 V97 1102 A 1 HETATM 23 N N19 V97 . . . C 3 -27.398 8.208 34.778 0.94 57.49 ? N19 V97 1102 A 1 HETATM 24 N N3 V97 . . . C 3 -23.82 11.919 25.678 0.94 34.1 ? N3 V97 1102 A 1 HETATM 25 O O10 V97 . . . C 3 -23.595 14.062 26.215 0.94 34.37 ? O10 V97 1102 A 1 HETATM 26 O O18 V97 . . . C 3 -25.256 8.11 35.338 0.94 62.44 ? O18 V97 1102 A 1 HETATM 27 O O24 V97 . . . C 3 -31.579 5.826 35.342 0.94 91.56 ? O24 V97 1102 A 1 HETATM 28 O O25 V97 . . . C 3 -31.636 6.437 37.443 0.94 90.16 ? O25 V97 1102 A 1 HETATM 29 O O27 V97 . . . C 3 -27.795 6.578 32.738 0.94 48.06 ? O27 V97 1102 A 1 HETATM 30 O O28 V97 . . . C 3 -28.138 4.633 34.117 0.94 67.65 ? O28 V97 1102 A 1 HETATM 31 S S12 V97 . . . C 3 -27.092 11.25 33.784 0.94 54.13 ? S12 V97 1102 A 1 HETATM 32 S S5 V97 . . . C 3 -27.486 11.887 28.086 0.94 33.51 ? S5 V97 1102 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 31 _model_server_stats.element_count 32 #