data_7JG3
#
_model_server_result.job_id            uM9AZ2v96NbSlB_EYWt8gQ 
_model_server_result.datetime_utc      '2024-10-19 16:48:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jg3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1101}' 
#
_entry.id    7JG3 
#
_exptl.entry_id    7JG3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.16 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLYCINAMIDE RIBONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7JG3 
_cell.length_a            74.522 
_cell.length_b            74.522 
_cell.length_c            100.06 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JG3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O VAL 98 A VAL 904 1_555 D NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? 
metalc ? metalc2 A O VAL 140 A VAL 946 1_555 D NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc3 D NA NA . A NA 1103 1_555 E O HOH . A HOH 1255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? 
#
_chem_comp.formula           'C7 H13 N2 O8 P -2' 
_chem_comp.formula_weight    284.16 
_chem_comp.id                GAR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GLYCINAMIDE RIBONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O6 GAR sing 83 n n 
C1 C2 GAR sing 84 n n 
C1 C5 GAR sing 85 n n 
C1 H1 GAR sing 86 n n 
O6 HO6 GAR sing 87 n n 
C2 O8 GAR sing 88 n n 
C2 C3 GAR sing 89 n n 
C2 H2 GAR sing 90 n n 
O8 HO8 GAR sing 91 n n 
C3 O4 GAR sing 92 n n 
C3 N19 GAR sing 93 n n 
C3 H3 GAR sing 94 n n 
O4 C5 GAR sing 95 n n 
C5 C10 GAR sing 96 n n 
C5 H5 GAR sing 97 n n 
C10 O12 GAR sing 98 n n 
C10 H101 GAR sing 99 n n 
C10 H102 GAR sing 100 n n 
O12 P15 GAR sing 101 n n 
N19 C21 GAR sing 102 n n 
N19 H19 GAR sing 103 n n 
C21 O22 GAR doub 104 n n 
C21 C23 GAR sing 105 n n 
C23 N24 GAR sing 106 n n 
C23 H231 GAR sing 107 n n 
C23 H232 GAR sing 108 n n 
N24 H241 GAR sing 109 n n 
N24 H242 GAR sing 110 n n 
P15 O16 GAR doub 111 n n 
P15 O17 GAR sing 112 n n 
P15 O18 GAR sing 113 n n 
#
_atom_sites.entry_id                     7JG3 
_atom_sites.fract_transf_matrix[1][1]    0.013419 
_atom_sites.fract_transf_matrix[1][2]    0.007747 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015495 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009994 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GAR A 1 1101 1101 GAR GAR . 
C 3 V9A A 1 1102 1201 V9A G13 . 
D 4 NA A 1 1103 1 NA NA . 
E 5 HOH A 1 1201 45 HOH HOH . 
E 5 HOH A 2 1202 114 HOH HOH . 
E 5 HOH A 3 1203 75 HOH HOH . 
E 5 HOH A 4 1204 87 HOH HOH . 
E 5 HOH A 5 1205 57 HOH HOH . 
E 5 HOH A 6 1206 1 HOH HOH . 
E 5 HOH A 7 1207 40 HOH HOH . 
E 5 HOH A 8 1208 93 HOH HOH . 
E 5 HOH A 9 1209 48 HOH HOH . 
E 5 HOH A 10 1210 88 HOH HOH . 
E 5 HOH A 11 1211 102 HOH HOH . 
E 5 HOH A 12 1212 50 HOH HOH . 
E 5 HOH A 13 1213 13 HOH HOH . 
E 5 HOH A 14 1214 67 HOH HOH . 
E 5 HOH A 15 1215 79 HOH HOH . 
E 5 HOH A 16 1216 55 HOH HOH . 
E 5 HOH A 17 1217 59 HOH HOH . 
E 5 HOH A 18 1218 28 HOH HOH . 
E 5 HOH A 19 1219 76 HOH HOH . 
E 5 HOH A 20 1220 90 HOH HOH . 
E 5 HOH A 21 1221 42 HOH HOH . 
E 5 HOH A 22 1222 38 HOH HOH . 
E 5 HOH A 23 1223 56 HOH HOH . 
E 5 HOH A 24 1224 58 HOH HOH . 
E 5 HOH A 25 1225 108 HOH HOH . 
E 5 HOH A 26 1226 46 HOH HOH . 
E 5 HOH A 27 1227 11 HOH HOH . 
E 5 HOH A 28 1228 43 HOH HOH . 
E 5 HOH A 29 1229 65 HOH HOH . 
E 5 HOH A 30 1230 17 HOH HOH . 
E 5 HOH A 31 1231 22 HOH HOH . 
E 5 HOH A 32 1232 35 HOH HOH . 
E 5 HOH A 33 1233 66 HOH HOH . 
E 5 HOH A 34 1234 5 HOH HOH . 
E 5 HOH A 35 1235 80 HOH HOH . 
E 5 HOH A 36 1236 70 HOH HOH . 
E 5 HOH A 37 1237 6 HOH HOH . 
E 5 HOH A 38 1238 4 HOH HOH . 
E 5 HOH A 39 1239 27 HOH HOH . 
E 5 HOH A 40 1240 14 HOH HOH . 
E 5 HOH A 41 1241 8 HOH HOH . 
E 5 HOH A 42 1242 73 HOH HOH . 
E 5 HOH A 43 1243 20 HOH HOH . 
E 5 HOH A 44 1244 31 HOH HOH . 
E 5 HOH A 45 1245 99 HOH HOH . 
E 5 HOH A 46 1246 12 HOH HOH . 
E 5 HOH A 47 1247 41 HOH HOH . 
E 5 HOH A 48 1248 44 HOH HOH . 
E 5 HOH A 49 1249 19 HOH HOH . 
E 5 HOH A 50 1250 18 HOH HOH . 
E 5 HOH A 51 1251 34 HOH HOH . 
E 5 HOH A 52 1252 23 HOH HOH . 
E 5 HOH A 53 1253 24 HOH HOH . 
E 5 HOH A 54 1254 29 HOH HOH . 
E 5 HOH A 55 1255 26 HOH HOH . 
E 5 HOH A 56 1256 16 HOH HOH . 
E 5 HOH A 57 1257 63 HOH HOH . 
E 5 HOH A 58 1258 15 HOH HOH . 
E 5 HOH A 59 1259 104 HOH HOH . 
E 5 HOH A 60 1260 71 HOH HOH . 
E 5 HOH A 61 1261 54 HOH HOH . 
E 5 HOH A 62 1262 68 HOH HOH . 
E 5 HOH A 63 1263 49 HOH HOH . 
E 5 HOH A 64 1264 81 HOH HOH . 
E 5 HOH A 65 1265 109 HOH HOH . 
E 5 HOH A 66 1266 7 HOH HOH . 
E 5 HOH A 67 1267 30 HOH HOH . 
E 5 HOH A 68 1268 113 HOH HOH . 
E 5 HOH A 69 1269 3 HOH HOH . 
E 5 HOH A 70 1270 25 HOH HOH . 
E 5 HOH A 71 1271 92 HOH HOH . 
E 5 HOH A 72 1272 85 HOH HOH . 
E 5 HOH A 73 1273 60 HOH HOH . 
E 5 HOH A 74 1274 91 HOH HOH . 
E 5 HOH A 75 1275 78 HOH HOH . 
E 5 HOH A 76 1276 53 HOH HOH . 
E 5 HOH A 77 1277 33 HOH HOH . 
E 5 HOH A 78 1278 10 HOH HOH . 
E 5 HOH A 79 1279 9 HOH HOH . 
E 5 HOH A 80 1280 21 HOH HOH . 
E 5 HOH A 81 1281 101 HOH HOH . 
E 5 HOH A 82 1282 100 HOH HOH . 
E 5 HOH A 83 1283 89 HOH HOH . 
E 5 HOH A 84 1284 61 HOH HOH . 
E 5 HOH A 85 1285 72 HOH HOH . 
E 5 HOH A 86 1286 74 HOH HOH . 
E 5 HOH A 87 1287 36 HOH HOH . 
E 5 HOH A 88 1288 32 HOH HOH . 
E 5 HOH A 89 1289 112 HOH HOH . 
E 5 HOH A 90 1290 106 HOH HOH . 
E 5 HOH A 91 1291 96 HOH HOH . 
E 5 HOH A 92 1292 107 HOH HOH . 
E 5 HOH A 93 1293 84 HOH HOH . 
E 5 HOH A 94 1294 103 HOH HOH . 
E 5 HOH A 95 1295 37 HOH HOH . 
E 5 HOH A 96 1296 69 HOH HOH . 
E 5 HOH A 97 1297 52 HOH HOH . 
E 5 HOH A 98 1298 2 HOH HOH . 
E 5 HOH A 99 1299 105 HOH HOH . 
E 5 HOH A 100 1300 83 HOH HOH . 
E 5 HOH A 101 1301 82 HOH HOH . 
E 5 HOH A 102 1302 64 HOH HOH . 
E 5 HOH A 103 1303 97 HOH HOH . 
E 5 HOH A 104 1304 39 HOH HOH . 
E 5 HOH A 105 1305 98 HOH HOH . 
E 5 HOH A 106 1306 77 HOH HOH . 
E 5 HOH A 107 1307 62 HOH HOH . 
E 5 HOH A 108 1308 95 HOH HOH . 
E 5 HOH A 109 1309 94 HOH HOH . 
E 5 HOH A 110 1310 110 HOH HOH . 
E 5 HOH A 111 1311 47 HOH HOH . 
E 5 HOH A 112 1312 111 HOH HOH . 
E 5 HOH A 113 1313 86 HOH HOH . 
E 5 HOH A 114 1314 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GAR . . . B 2 -31.348 20.927 35.428 1 47.06 ? C1 GAR 1101 A 1 
HETATM 2 O O6 GAR . . . B 2 -30.75 21.769 36.403 1 52.82 ? O6 GAR 1101 A 1 
HETATM 3 C C2 GAR . . . B 2 -30.226 20.378 34.517 1 52.84 ? C2 GAR 1101 A 1 
HETATM 4 O O8 GAR . . . B 2 -29.178 21.295 34.364 1 61.47 ? O8 GAR 1101 A 1 
HETATM 5 C C3 GAR . . . B 2 -29.836 19.063 35.227 1 50.11 ? C3 GAR 1101 A 1 
HETATM 6 O O4 GAR . . . B 2 -31.065 18.611 35.867 1 44.07 ? O4 GAR 1101 A 1 
HETATM 7 C C5 GAR . . . B 2 -31.979 19.698 36.114 1 39.4 ? C5 GAR 1101 A 1 
HETATM 8 C C10 GAR . . . B 2 -33.376 19.388 35.611 1 44.47 ? C10 GAR 1101 A 1 
HETATM 9 O O12 GAR . . . B 2 -34.296 20.384 36.082 1 47.43 ? O12 GAR 1101 A 1 
HETATM 10 N N19 GAR . . . B 2 -29.301 18.006 34.396 1 62.41 ? N19 GAR 1101 A 1 
HETATM 11 C C21 GAR . . . B 2 -28.079 17.505 34.676 1 66.71 ? C21 GAR 1101 A 1 
HETATM 12 O O22 GAR . . . B 2 -27.446 17.691 35.726 1 61.52 ? O22 GAR 1101 A 1 
HETATM 13 C C23 GAR . . . B 2 -27.523 16.628 33.577 1 64.02 ? C23 GAR 1101 A 1 
HETATM 14 N N24 GAR . . . B 2 -26.271 15.99 33.933 1 64.63 ? N24 GAR 1101 A 1 
HETATM 15 P P15 GAR . . . B 2 -35.81 20.391 35.501 1 43.28 ? P15 GAR 1101 A 1 
HETATM 16 O O16 GAR . . . B 2 -35.615 20.929 34.092 1 37.98 ? O16 GAR 1101 A 1 
HETATM 17 O O17 GAR . . . B 2 -36.58 21.305 36.435 1 36.96 ? O17 GAR 1101 A 1 
HETATM 18 O O18 GAR . . . B 2 -36.233 18.94 35.58 1 39.11 ? O18 GAR 1101 A 1 
HETATM 19 H H1 GAR . . . B 2 -32.104 21.503 34.876 1 56.47 ? H1 GAR 1101 A 1 
HETATM 20 H HO6 GAR . . . B 2 -30.861 22.693 36.142 1 63.38 ? HO6 GAR 1101 A 1 
HETATM 21 H H2 GAR . . . B 2 -30.528 20.207 33.474 1 63.41 ? H2 GAR 1101 A 1 
HETATM 22 H HO8 GAR . . . B 2 -28.607 21.014 33.635 1 73.77 ? HO8 GAR 1101 A 1 
HETATM 23 H H3 GAR . . . B 2 -28.999 19.285 35.905 1 60.14 ? H3 GAR 1101 A 1 
HETATM 24 H H5 GAR . . . B 2 -32.113 19.877 37.19 1 47.28 ? H5 GAR 1101 A 1 
HETATM 25 H H101 GAR . . . B 2 -33.379 19.37 34.519 1 53.36 ? H101 GAR 1101 A 1 
HETATM 26 H H102 GAR . . . B 2 -33.685 18.403 35.964 1 53.36 ? H102 GAR 1101 A 1 
HETATM 27 H H19 GAR . . . B 2 -29.845 17.656 33.62 1 74.89 ? H19 GAR 1101 A 1 
HETATM 28 H H231 GAR . . . B 2 -27.368 17.236 32.684 1 76.83 ? H231 GAR 1101 A 1 
HETATM 29 H H232 GAR . . . B 2 -28.257 15.857 33.335 1 76.83 ? H232 GAR 1101 A 1 
HETATM 30 H H241 GAR . . . B 2 -25.86 16.154 34.841 1 77.56 ? H241 GAR 1101 A 1 
HETATM 31 H H242 GAR . . . B 2 -25.809 15.381 33.273 1 77.56 ? H242 GAR 1101 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#