data_7JG3
#
_model_server_result.job_id            WVnGJQGmO290myyyiSYAJw 
_model_server_result.datetime_utc      '2024-10-19 16:35:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jg3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1102}' 
#
_entry.id    7JG3 
#
_exptl.entry_id    7JG3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              462.476 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-{5-[4-(2-amino-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-6-yl)butyl]furan-2-carbonyl}-L-glutamic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7JG3 
_cell.length_a            74.522 
_cell.length_b            74.522 
_cell.length_c            100.06 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JG3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O VAL 98 A VAL 904 1_555 D NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? 
metalc ? metalc2 A O VAL 140 A VAL 946 1_555 D NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc3 D NA NA . A NA 1103 1_555 E O HOH . A HOH 1255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? 
#
_chem_comp.formula           'C20 H22 N4 O7 S' 
_chem_comp.formula_weight    462.476 
_chem_comp.id                V9A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-{5-[4-(2-amino-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-6-yl)butyl]furan-2-carbonyl}-L-glutamic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N11 C2 V9A sing 389 n n 
N3 C2 V9A sing 390 n n 
N3 C4 V9A sing 391 n n 
C2 N1 V9A doub 392 n n 
O10 C4 V9A doub 393 n n 
C4 C8 V9A sing 394 n n 
N1 C9 V9A sing 395 n n 
C8 C9 V9A doub 396 n y 
C8 C7 V9A sing 397 n y 
C9 S5 V9A sing 398 n y 
C7 C6 V9A doub 399 n y 
S5 C6 V9A sing 400 n y 
C6 C30 V9A sing 401 n n 
C30 C31 V9A sing 402 n n 
C31 C32 V9A sing 403 n n 
C32 C33 V9A sing 404 n n 
C33 C16 V9A sing 405 n n 
O28 C26 V9A doub 406 n n 
C16 C15 V9A doub 407 n y 
C16 O12 V9A sing 408 n y 
C15 C14 V9A sing 409 n y 
O12 C13 V9A sing 410 n y 
C14 C13 V9A doub 411 n y 
C26 O27 V9A sing 412 n n 
C26 C20 V9A sing 413 n n 
C13 C17 V9A sing 414 n n 
N19 C17 V9A sing 415 n n 
N19 C20 V9A sing 416 n n 
C17 O18 V9A doub 417 n n 
C20 C21 V9A sing 418 n n 
C21 C22 V9A sing 419 n n 
C22 C23 V9A sing 420 n n 
O24 C23 V9A doub 421 n n 
C23 O25 V9A sing 422 n n 
O25 H1 V9A sing 423 n n 
C30 H2 V9A sing 424 n n 
C30 H3 V9A sing 425 n n 
C32 H4 V9A sing 426 n n 
C32 H5 V9A sing 427 n n 
C31 H6 V9A sing 428 n n 
C31 H7 V9A sing 429 n n 
C33 H8 V9A sing 430 n n 
C33 H9 V9A sing 431 n n 
C20 H10 V9A sing 432 n n 
C22 H11 V9A sing 433 n n 
C22 H12 V9A sing 434 n n 
C21 H13 V9A sing 435 n n 
C21 H14 V9A sing 436 n n 
C14 H15 V9A sing 437 n n 
C15 H16 V9A sing 438 n n 
C7 H17 V9A sing 439 n n 
N11 H18 V9A sing 440 n n 
N11 H19 V9A sing 441 n n 
N19 H20 V9A sing 442 n n 
N3 H21 V9A sing 443 n n 
O27 H22 V9A sing 444 n n 
#
_atom_sites.entry_id                     7JG3 
_atom_sites.fract_transf_matrix[1][1]    0.013419 
_atom_sites.fract_transf_matrix[1][2]    0.007747 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015495 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009994 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GAR A 1 1101 1101 GAR GAR . 
C 3 V9A A 1 1102 1201 V9A G13 . 
D 4 NA A 1 1103 1 NA NA . 
E 5 HOH A 1 1201 45 HOH HOH . 
E 5 HOH A 2 1202 114 HOH HOH . 
E 5 HOH A 3 1203 75 HOH HOH . 
E 5 HOH A 4 1204 87 HOH HOH . 
E 5 HOH A 5 1205 57 HOH HOH . 
E 5 HOH A 6 1206 1 HOH HOH . 
E 5 HOH A 7 1207 40 HOH HOH . 
E 5 HOH A 8 1208 93 HOH HOH . 
E 5 HOH A 9 1209 48 HOH HOH . 
E 5 HOH A 10 1210 88 HOH HOH . 
E 5 HOH A 11 1211 102 HOH HOH . 
E 5 HOH A 12 1212 50 HOH HOH . 
E 5 HOH A 13 1213 13 HOH HOH . 
E 5 HOH A 14 1214 67 HOH HOH . 
E 5 HOH A 15 1215 79 HOH HOH . 
E 5 HOH A 16 1216 55 HOH HOH . 
E 5 HOH A 17 1217 59 HOH HOH . 
E 5 HOH A 18 1218 28 HOH HOH . 
E 5 HOH A 19 1219 76 HOH HOH . 
E 5 HOH A 20 1220 90 HOH HOH . 
E 5 HOH A 21 1221 42 HOH HOH . 
E 5 HOH A 22 1222 38 HOH HOH . 
E 5 HOH A 23 1223 56 HOH HOH . 
E 5 HOH A 24 1224 58 HOH HOH . 
E 5 HOH A 25 1225 108 HOH HOH . 
E 5 HOH A 26 1226 46 HOH HOH . 
E 5 HOH A 27 1227 11 HOH HOH . 
E 5 HOH A 28 1228 43 HOH HOH . 
E 5 HOH A 29 1229 65 HOH HOH . 
E 5 HOH A 30 1230 17 HOH HOH . 
E 5 HOH A 31 1231 22 HOH HOH . 
E 5 HOH A 32 1232 35 HOH HOH . 
E 5 HOH A 33 1233 66 HOH HOH . 
E 5 HOH A 34 1234 5 HOH HOH . 
E 5 HOH A 35 1235 80 HOH HOH . 
E 5 HOH A 36 1236 70 HOH HOH . 
E 5 HOH A 37 1237 6 HOH HOH . 
E 5 HOH A 38 1238 4 HOH HOH . 
E 5 HOH A 39 1239 27 HOH HOH . 
E 5 HOH A 40 1240 14 HOH HOH . 
E 5 HOH A 41 1241 8 HOH HOH . 
E 5 HOH A 42 1242 73 HOH HOH . 
E 5 HOH A 43 1243 20 HOH HOH . 
E 5 HOH A 44 1244 31 HOH HOH . 
E 5 HOH A 45 1245 99 HOH HOH . 
E 5 HOH A 46 1246 12 HOH HOH . 
E 5 HOH A 47 1247 41 HOH HOH . 
E 5 HOH A 48 1248 44 HOH HOH . 
E 5 HOH A 49 1249 19 HOH HOH . 
E 5 HOH A 50 1250 18 HOH HOH . 
E 5 HOH A 51 1251 34 HOH HOH . 
E 5 HOH A 52 1252 23 HOH HOH . 
E 5 HOH A 53 1253 24 HOH HOH . 
E 5 HOH A 54 1254 29 HOH HOH . 
E 5 HOH A 55 1255 26 HOH HOH . 
E 5 HOH A 56 1256 16 HOH HOH . 
E 5 HOH A 57 1257 63 HOH HOH . 
E 5 HOH A 58 1258 15 HOH HOH . 
E 5 HOH A 59 1259 104 HOH HOH . 
E 5 HOH A 60 1260 71 HOH HOH . 
E 5 HOH A 61 1261 54 HOH HOH . 
E 5 HOH A 62 1262 68 HOH HOH . 
E 5 HOH A 63 1263 49 HOH HOH . 
E 5 HOH A 64 1264 81 HOH HOH . 
E 5 HOH A 65 1265 109 HOH HOH . 
E 5 HOH A 66 1266 7 HOH HOH . 
E 5 HOH A 67 1267 30 HOH HOH . 
E 5 HOH A 68 1268 113 HOH HOH . 
E 5 HOH A 69 1269 3 HOH HOH . 
E 5 HOH A 70 1270 25 HOH HOH . 
E 5 HOH A 71 1271 92 HOH HOH . 
E 5 HOH A 72 1272 85 HOH HOH . 
E 5 HOH A 73 1273 60 HOH HOH . 
E 5 HOH A 74 1274 91 HOH HOH . 
E 5 HOH A 75 1275 78 HOH HOH . 
E 5 HOH A 76 1276 53 HOH HOH . 
E 5 HOH A 77 1277 33 HOH HOH . 
E 5 HOH A 78 1278 10 HOH HOH . 
E 5 HOH A 79 1279 9 HOH HOH . 
E 5 HOH A 80 1280 21 HOH HOH . 
E 5 HOH A 81 1281 101 HOH HOH . 
E 5 HOH A 82 1282 100 HOH HOH . 
E 5 HOH A 83 1283 89 HOH HOH . 
E 5 HOH A 84 1284 61 HOH HOH . 
E 5 HOH A 85 1285 72 HOH HOH . 
E 5 HOH A 86 1286 74 HOH HOH . 
E 5 HOH A 87 1287 36 HOH HOH . 
E 5 HOH A 88 1288 32 HOH HOH . 
E 5 HOH A 89 1289 112 HOH HOH . 
E 5 HOH A 90 1290 106 HOH HOH . 
E 5 HOH A 91 1291 96 HOH HOH . 
E 5 HOH A 92 1292 107 HOH HOH . 
E 5 HOH A 93 1293 84 HOH HOH . 
E 5 HOH A 94 1294 103 HOH HOH . 
E 5 HOH A 95 1295 37 HOH HOH . 
E 5 HOH A 96 1296 69 HOH HOH . 
E 5 HOH A 97 1297 52 HOH HOH . 
E 5 HOH A 98 1298 2 HOH HOH . 
E 5 HOH A 99 1299 105 HOH HOH . 
E 5 HOH A 100 1300 83 HOH HOH . 
E 5 HOH A 101 1301 82 HOH HOH . 
E 5 HOH A 102 1302 64 HOH HOH . 
E 5 HOH A 103 1303 97 HOH HOH . 
E 5 HOH A 104 1304 39 HOH HOH . 
E 5 HOH A 105 1305 98 HOH HOH . 
E 5 HOH A 106 1306 77 HOH HOH . 
E 5 HOH A 107 1307 62 HOH HOH . 
E 5 HOH A 108 1308 95 HOH HOH . 
E 5 HOH A 109 1309 94 HOH HOH . 
E 5 HOH A 110 1310 110 HOH HOH . 
E 5 HOH A 111 1311 47 HOH HOH . 
E 5 HOH A 112 1312 111 HOH HOH . 
E 5 HOH A 113 1313 86 HOH HOH . 
E 5 HOH A 114 1314 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O25 V9A . . . C 3 -30.297 9.888 37.797 1 103.84 ? O25 V9A 1102 A 1 
HETATM 2 C C26 V9A . . . C 3 -27.226 6.358 33.878 1 79.98 ? C26 V9A 1102 A 1 
HETATM 3 C C30 V9A . . . C 3 -28.411 13.979 29.121 1 57.78 ? C30 V9A 1102 A 1 
HETATM 4 C C32 V9A . . . C 3 -26.77 13.545 30.929 1 61.67 ? C32 V9A 1102 A 1 
HETATM 5 C C31 V9A . . . C 3 -27.786 14.541 30.391 1 61.74 ? C31 V9A 1102 A 1 
HETATM 6 C C33 V9A . . . C 3 -27.048 13.314 32.398 1 69.26 ? C33 V9A 1102 A 1 
HETATM 7 C C20 V9A . . . C 3 -27.057 7.331 35.045 1 82.25 ? C20 V9A 1102 A 1 
HETATM 8 C C16 V9A . . . C 3 -26.032 12.38 33.035 1 76.18 ? C16 V9A 1102 A 1 
HETATM 9 C C17 V9A . . . C 3 -25.495 9.198 34.604 1 86.75 ? C17 V9A 1102 A 1 
HETATM 10 C C22 V9A . . . C 3 -28.541 8.72 36.591 1 94.68 ? C22 V9A 1102 A 1 
HETATM 11 C C21 V9A . . . C 3 -28.392 7.426 35.786 1 86.2 ? C21 V9A 1102 A 1 
HETATM 12 C C13 V9A . . . C 3 -25.345 10.592 33.999 1 80.74 ? C13 V9A 1102 A 1 
HETATM 13 C C8 V9A . . . C 3 -25.438 12.609 27.113 1 54.47 ? C8 V9A 1102 A 1 
HETATM 14 C C9 V9A . . . C 3 -26.05 11.353 27.116 1 56.08 ? C9 V9A 1102 A 1 
HETATM 15 C C4 V9A . . . C 3 -24.19 12.708 26.444 1 55.27 ? C4 V9A 1102 A 1 
HETATM 16 C C14 V9A . . . C 3 -24.194 11.388 33.873 1 75.51 ? C14 V9A 1102 A 1 
HETATM 17 C C15 V9A . . . C 3 -24.656 12.588 33.228 1 70.68 ? C15 V9A 1102 A 1 
HETATM 18 C C2 V9A . . . C 3 -24.316 10.496 25.92 1 62.35 ? C2 V9A 1102 A 1 
HETATM 19 C C23 V9A . . . C 3 -29.873 8.783 37.351 1 102.66 ? C23 V9A 1102 A 1 
HETATM 20 C C6 V9A . . . C 3 -27.406 13.178 28.359 1 53.24 ? C6 V9A 1102 A 1 
HETATM 21 C C7 V9A . . . C 3 -26.196 13.65 27.815 1 48.45 ? C7 V9A 1102 A 1 
HETATM 22 N N1 V9A . . . C 3 -25.496 10.287 26.516 1 58.13 ? N1 V9A 1102 A 1 
HETATM 23 N N11 V9A . . . C 3 -23.757 9.439 25.334 1 62.1 ? N11 V9A 1102 A 1 
HETATM 24 N N19 V9A . . . C 3 -26.716 8.645 34.53 1 84.14 ? N19 V9A 1102 A 1 
HETATM 25 N N3 V9A . . . C 3 -23.632 11.651 25.852 1 58.91 ? N3 V9A 1102 A 1 
HETATM 26 O O10 V9A . . . C 3 -23.61 13.82 26.417 1 45.12 ? O10 V9A 1102 A 1 
HETATM 27 O O12 V9A . . . C 3 -26.36 11.218 33.496 1 78.32 ? O12 V9A 1102 A 1 
HETATM 28 O O18 V9A . . . C 3 -24.551 8.619 35.137 1 93.99 ? O18 V9A 1102 A 1 
HETATM 29 O O24 V9A . . . C 3 -30.543 7.73 37.525 1 106.8 ? O24 V9A 1102 A 1 
HETATM 30 O O27 V9A . . . C 3 -27.655 5.052 34.12 1 83.33 ? O27 V9A 1102 A 1 
HETATM 31 O O28 V9A . . . C 3 -26.974 6.757 32.561 1 76.63 ? O28 V9A 1102 A 1 
HETATM 32 S S5 V9A . . . C 3 -27.526 11.491 27.977 1 56.46 ? S5 V9A 1102 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          22 
_model_server_stats.element_count           32 
#