data_7JGO # _model_server_result.job_id x8wK71-qvnAGIW6rewOF7w _model_server_result.datetime_utc '2025-09-01 04:17:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jgo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 7JGO # _exptl.entry_id 7JGO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JGO _cell.length_a 156.082 _cell.length_b 156.082 _cell.length_c 156.082 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JGO _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall 'I 4 2 3' _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 1 2 A,B,C,D,E,F,G 1 3 A,B,C,D,E,F,G 1 4 A,B,C,D,E,F,G 1 5 A,B,C,D,E,F,G 1 6 A,B,C,D,E,F,G 1 7 A,B,C,D,E,F,G 1 8 A,B,C,D,E,F,G 1 9 A,B,C,D,E,F,G 1 10 A,B,C,D,E,F,G 1 11 A,B,C,D,E,F,G 1 12 A,B,C,D,E,F,G 1 13 A,B,C,D,E,F,G 1 14 A,B,C,D,E,F,G 1 15 A,B,C,D,E,F,G 1 16 A,B,C,D,E,F,G 1 17 A,B,C,D,E,F,G 1 18 A,B,C,D,E,F,G 1 19 A,B,C,D,E,F,G 1 20 A,B,C,D,E,F,G 1 21 A,B,C,D,E,F,G 1 22 A,B,C,D,E,F,G 1 23 A,B,C,D,E,F,G 1 24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 27 A GLU 27 1_555 C NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc2 A OE2 GLU 62 A GLU 62 1_555 C NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 A ND1 HIS 65 A HIS 65 1_555 C NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc4 A NE2 HIS 122 A HIS 122 1_555 D NI NI . A NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc5 A NE2 HIS 122 A HIS 122 1_555 D NI NI . A NI 203 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc6 A OD1 ASP 131 A ASP 131 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc7 A OD1 ASP 131 A ASP 131 1_555 F NA NA . A NA 205 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc8 A OE2 GLU 134 A GLU 134 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc9 A OE2 GLU 134 A GLU 134 1_555 F NA NA . A NA 205 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc10 A NE2 HIS 173 A HIS 173 1_555 E NI NI . A NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc11 A NE2 HIS 173 A HIS 173 1_555 E NI NI . A NI 204 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc12 B N10 V9Y . A V9Y 201 1_555 D NI NI . A NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc13 B O11 V9Y . A V9Y 201 1_555 D NI NI . A NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc14 B O12 V9Y . A V9Y 201 1_555 D NI NI . A NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc15 B N03 V9Y . A V9Y 201 1_555 D NI NI . A NI 203 38_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc16 B N10 V9Y . A V9Y 201 1_555 D NI NI . A NI 203 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc17 B O01 V9Y . A V9Y 201 1_555 D NI NI . A NI 203 38_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc18 B O04 V9Y . A V9Y 201 1_555 D NI NI . A NI 203 38_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc19 B O11 V9Y . A V9Y 201 1_555 D NI NI . A NI 203 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc20 B O12 V9Y . A V9Y 201 1_555 D NI NI . A NI 203 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc21 E NI NI . A NI 204 1_555 G O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc22 E NI NI . A NI 204 1_555 G O HOH . A HOH 315 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7JGO _atom_sites.fract_transf_matrix[1][1] 0.006407 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V9Y A 1 201 1 V9Y FDH . C 3 NI A 1 202 3 NI NI . D 3 NI A 1 203 1 NI NI . E 3 NI A 1 204 2 NI NI . F 4 NA A 1 205 1 NA NA . G 5 HOH A 1 301 22 HOH HOH . G 5 HOH A 2 302 25 HOH HOH . G 5 HOH A 3 303 11 HOH HOH . G 5 HOH A 4 304 13 HOH HOH . G 5 HOH A 5 305 4 HOH HOH . G 5 HOH A 6 306 17 HOH HOH . G 5 HOH A 7 307 12 HOH HOH . G 5 HOH A 8 308 1 HOH HOH . G 5 HOH A 9 309 3 HOH HOH . G 5 HOH A 10 310 16 HOH HOH . G 5 HOH A 11 311 19 HOH HOH . G 5 HOH A 12 312 23 HOH HOH . G 5 HOH A 13 313 20 HOH HOH . G 5 HOH A 14 314 6 HOH HOH . G 5 HOH A 15 315 21 HOH HOH . G 5 HOH A 16 316 15 HOH HOH . G 5 HOH A 17 317 5 HOH HOH . G 5 HOH A 18 318 10 HOH HOH . G 5 HOH A 19 319 8 HOH HOH . G 5 HOH A 20 320 2 HOH HOH . G 5 HOH A 21 321 18 HOH HOH . G 5 HOH A 22 322 24 HOH HOH . G 5 HOH A 23 323 9 HOH HOH . G 5 HOH A 24 324 14 HOH HOH . G 5 HOH A 25 325 7 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 28.564 _atom_site.Cartn_y 28.564 _atom_site.Cartn_z 28.564 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 28.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 205 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 376 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #