data_7JGV # _model_server_result.job_id FBI2ugGM4qFY6JDMbaGjkQ _model_server_result.datetime_utc '2024-12-03 19:36:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jgv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7JGV # _exptl.entry_id 7JGV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 617.717 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-[(8E)-8-{2-[4-(benzylcarbamoyl)-1,3-thiazol-2-yl]hydrazinylidene}-5,6,7,8-tetrahydronaphthalen-2-yl]-3-(2-phenylethoxy)pyridine-2-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JGV _cell.length_a 40.324 _cell.length_b 56.256 _cell.length_c 117.756 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C35 H31 N5 O4 S' _chem_comp.formula_weight 617.717 _chem_comp.id V9S _chem_comp.mon_nstd_flag . _chem_comp.name '6-[(8E)-8-{2-[4-(benzylcarbamoyl)-1,3-thiazol-2-yl]hydrazinylidene}-5,6,7,8-tetrahydronaphthalen-2-yl]-3-(2-phenylethoxy)pyridine-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 C34 V9S doub 358 n y C33 C32 V9S sing 359 n y C34 C35 V9S sing 360 n y C32 C31 V9S doub 361 n y C35 C30 V9S doub 362 n y C31 C30 V9S sing 363 n y C1 C3 V9S doub 364 n y C1 C2 V9S sing 365 n y C3 C4 V9S sing 366 n y C30 C29 V9S sing 367 n n O1 C8 V9S doub 368 n n C2 C6 V9S doub 369 n y C4 C7 V9S sing 370 n n C4 C5 V9S doub 371 n y C7 N1 V9S sing 372 n n C29 C28 V9S sing 373 n n C8 N1 V9S sing 374 n n C8 C9 V9S sing 375 n n C11 C9 V9S doub 376 n y C11 S1 V9S sing 377 n y C6 C5 V9S sing 378 n y C28 O4 V9S sing 379 n n C9 N2 V9S sing 380 n y S1 C10 V9S sing 381 n y O4 C25 V9S sing 382 n n C24 C25 V9S doub 383 n y C24 C23 V9S sing 384 n y N2 C10 V9S doub 385 n y C25 C26 V9S sing 386 n y C10 N3 V9S sing 387 n n C23 C22 V9S doub 388 n y C26 C27 V9S sing 389 n n C26 N5 V9S doub 390 n y N3 N4 V9S sing 391 n n C22 N5 V9S sing 392 n y C22 C19 V9S sing 393 n n O3 C27 V9S doub 394 n n N4 C12 V9S doub 395 e n C27 O2 V9S sing 396 n n C18 C19 V9S doub 397 n y C18 C17 V9S sing 398 n y C19 C20 V9S sing 399 n y C12 C17 V9S sing 400 n n C12 C13 V9S sing 401 n n C17 C16 V9S doub 402 n y C20 C21 V9S doub 403 n y C13 C14 V9S sing 404 n n C16 C21 V9S sing 405 n y C16 C15 V9S sing 406 n n C14 C15 V9S sing 407 n n C21 H1 V9S sing 408 n n C31 H2 V9S sing 409 n n O2 H3 V9S sing 410 n n C28 H4 V9S sing 411 n n C28 H5 V9S sing 412 n n C29 H6 V9S sing 413 n n C29 H7 V9S sing 414 n n C35 H8 V9S sing 415 n n C34 H9 V9S sing 416 n n C33 H10 V9S sing 417 n n C32 H11 V9S sing 418 n n C24 H12 V9S sing 419 n n C23 H13 V9S sing 420 n n C20 H14 V9S sing 421 n n C15 H15 V9S sing 422 n n C15 H16 V9S sing 423 n n C14 H17 V9S sing 424 n n C14 H18 V9S sing 425 n n C13 H19 V9S sing 426 n n C13 H20 V9S sing 427 n n C18 H21 V9S sing 428 n n N3 H22 V9S sing 429 n n C11 H23 V9S sing 430 n n N1 H24 V9S sing 431 n n C7 H25 V9S sing 432 n n C7 H26 V9S sing 433 n n C3 H27 V9S sing 434 n n C1 H28 V9S sing 435 n n C5 H29 V9S sing 436 n n C6 H30 V9S sing 437 n n C2 H31 V9S sing 438 n n # _atom_sites.entry_id 7JGV _atom_sites.fract_transf_matrix[1][1] 0.024799 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 V9S A 1 301 301 V9S THZ . D 2 V9S B 1 301 301 V9S THZ . E 3 HOH A 1 401 130 HOH HOH . E 3 HOH A 2 402 85 HOH HOH . E 3 HOH A 3 403 105 HOH HOH . E 3 HOH A 4 404 144 HOH HOH . E 3 HOH A 5 405 142 HOH HOH . E 3 HOH A 6 406 86 HOH HOH . E 3 HOH A 7 407 136 HOH HOH . E 3 HOH A 8 408 153 HOH HOH . E 3 HOH A 9 409 62 HOH HOH . E 3 HOH A 10 410 154 HOH HOH . E 3 HOH A 11 411 21 HOH HOH . E 3 HOH A 12 412 120 HOH HOH . E 3 HOH A 13 413 74 HOH HOH . E 3 HOH A 14 414 23 HOH HOH . E 3 HOH A 15 415 140 HOH HOH . E 3 HOH A 16 416 19 HOH HOH . E 3 HOH A 17 417 101 HOH HOH . E 3 HOH A 18 418 89 HOH HOH . E 3 HOH A 19 419 100 HOH HOH . E 3 HOH A 20 420 14 HOH HOH . E 3 HOH A 21 421 79 HOH HOH . E 3 HOH A 22 422 152 HOH HOH . E 3 HOH A 23 423 35 HOH HOH . E 3 HOH A 24 424 61 HOH HOH . E 3 HOH A 25 425 11 HOH HOH . E 3 HOH A 26 426 135 HOH HOH . E 3 HOH A 27 427 143 HOH HOH . E 3 HOH A 28 428 112 HOH HOH . E 3 HOH A 29 429 80 HOH HOH . E 3 HOH A 30 430 70 HOH HOH . E 3 HOH A 31 431 82 HOH HOH . E 3 HOH A 32 432 147 HOH HOH . E 3 HOH A 33 433 2 HOH HOH . E 3 HOH A 34 434 148 HOH HOH . E 3 HOH A 35 435 71 HOH HOH . E 3 HOH A 36 436 88 HOH HOH . E 3 HOH A 37 437 87 HOH HOH . E 3 HOH A 38 438 59 HOH HOH . E 3 HOH A 39 439 20 HOH HOH . E 3 HOH A 40 440 63 HOH HOH . E 3 HOH A 41 441 72 HOH HOH . E 3 HOH A 42 442 43 HOH HOH . E 3 HOH A 43 443 149 HOH HOH . E 3 HOH A 44 444 97 HOH HOH . E 3 HOH A 45 445 103 HOH HOH . E 3 HOH A 46 446 68 HOH HOH . E 3 HOH A 47 447 113 HOH HOH . E 3 HOH A 48 448 75 HOH HOH . E 3 HOH A 49 449 81 HOH HOH . E 3 HOH A 50 450 119 HOH HOH . E 3 HOH A 51 451 33 HOH HOH . E 3 HOH A 52 452 65 HOH HOH . E 3 HOH A 53 453 146 HOH HOH . E 3 HOH A 54 454 67 HOH HOH . E 3 HOH A 55 455 69 HOH HOH . E 3 HOH A 56 456 128 HOH HOH . E 3 HOH A 57 457 83 HOH HOH . E 3 HOH A 58 458 47 HOH HOH . E 3 HOH A 59 459 122 HOH HOH . E 3 HOH A 60 460 123 HOH HOH . E 3 HOH A 61 461 150 HOH HOH . E 3 HOH A 62 462 118 HOH HOH . F 3 HOH B 1 401 76 HOH HOH . F 3 HOH B 2 402 53 HOH HOH . F 3 HOH B 3 403 40 HOH HOH . F 3 HOH B 4 404 17 HOH HOH . F 3 HOH B 5 405 156 HOH HOH . F 3 HOH B 6 406 54 HOH HOH . F 3 HOH B 7 407 7 HOH HOH . F 3 HOH B 8 408 55 HOH HOH . F 3 HOH B 9 409 163 HOH HOH . F 3 HOH B 10 410 42 HOH HOH . F 3 HOH B 11 411 121 HOH HOH . F 3 HOH B 12 412 44 HOH HOH . F 3 HOH B 13 413 28 HOH HOH . F 3 HOH B 14 414 66 HOH HOH . F 3 HOH B 15 415 115 HOH HOH . F 3 HOH B 16 416 98 HOH HOH . F 3 HOH B 17 417 18 HOH HOH . F 3 HOH B 18 418 60 HOH HOH . F 3 HOH B 19 419 48 HOH HOH . F 3 HOH B 20 420 93 HOH HOH . F 3 HOH B 21 421 25 HOH HOH . F 3 HOH B 22 422 64 HOH HOH . F 3 HOH B 23 423 5 HOH HOH . F 3 HOH B 24 424 139 HOH HOH . F 3 HOH B 25 425 165 HOH HOH . F 3 HOH B 26 426 95 HOH HOH . F 3 HOH B 27 427 131 HOH HOH . F 3 HOH B 28 428 51 HOH HOH . F 3 HOH B 29 429 24 HOH HOH . F 3 HOH B 30 430 96 HOH HOH . F 3 HOH B 31 431 12 HOH HOH . F 3 HOH B 32 432 104 HOH HOH . F 3 HOH B 33 433 111 HOH HOH . F 3 HOH B 34 434 6 HOH HOH . F 3 HOH B 35 435 30 HOH HOH . F 3 HOH B 36 436 102 HOH HOH . F 3 HOH B 37 437 57 HOH HOH . F 3 HOH B 38 438 116 HOH HOH . F 3 HOH B 39 439 141 HOH HOH . F 3 HOH B 40 440 132 HOH HOH . F 3 HOH B 41 441 110 HOH HOH . F 3 HOH B 42 442 9 HOH HOH . F 3 HOH B 43 443 29 HOH HOH . F 3 HOH B 44 444 157 HOH HOH . F 3 HOH B 45 445 107 HOH HOH . F 3 HOH B 46 446 56 HOH HOH . F 3 HOH B 47 447 106 HOH HOH . F 3 HOH B 48 448 36 HOH HOH . F 3 HOH B 49 449 58 HOH HOH . F 3 HOH B 50 450 73 HOH HOH . F 3 HOH B 51 451 26 HOH HOH . F 3 HOH B 52 452 37 HOH HOH . F 3 HOH B 53 453 3 HOH HOH . F 3 HOH B 54 454 4 HOH HOH . F 3 HOH B 55 455 109 HOH HOH . F 3 HOH B 56 456 126 HOH HOH . F 3 HOH B 57 457 16 HOH HOH . F 3 HOH B 58 458 46 HOH HOH . F 3 HOH B 59 459 91 HOH HOH . F 3 HOH B 60 460 78 HOH HOH . F 3 HOH B 61 461 41 HOH HOH . F 3 HOH B 62 462 129 HOH HOH . F 3 HOH B 63 463 52 HOH HOH . F 3 HOH B 64 464 134 HOH HOH . F 3 HOH B 65 465 94 HOH HOH . F 3 HOH B 66 466 45 HOH HOH . F 3 HOH B 67 467 151 HOH HOH . F 3 HOH B 68 468 8 HOH HOH . F 3 HOH B 69 469 1 HOH HOH . F 3 HOH B 70 470 90 HOH HOH . F 3 HOH B 71 471 39 HOH HOH . F 3 HOH B 72 472 108 HOH HOH . F 3 HOH B 73 473 164 HOH HOH . F 3 HOH B 74 474 137 HOH HOH . F 3 HOH B 75 475 32 HOH HOH . F 3 HOH B 76 476 13 HOH HOH . F 3 HOH B 77 477 10 HOH HOH . F 3 HOH B 78 478 31 HOH HOH . F 3 HOH B 79 479 124 HOH HOH . F 3 HOH B 80 480 99 HOH HOH . F 3 HOH B 81 481 125 HOH HOH . F 3 HOH B 82 482 22 HOH HOH . F 3 HOH B 83 483 159 HOH HOH . F 3 HOH B 84 484 162 HOH HOH . F 3 HOH B 85 485 92 HOH HOH . F 3 HOH B 86 486 114 HOH HOH . F 3 HOH B 87 487 160 HOH HOH . F 3 HOH B 88 488 38 HOH HOH . F 3 HOH B 89 489 145 HOH HOH . F 3 HOH B 90 490 84 HOH HOH . F 3 HOH B 91 491 34 HOH HOH . F 3 HOH B 92 492 77 HOH HOH . F 3 HOH B 93 493 117 HOH HOH . F 3 HOH B 94 494 138 HOH HOH . F 3 HOH B 95 495 50 HOH HOH . F 3 HOH B 96 496 161 HOH HOH . F 3 HOH B 97 497 158 HOH HOH . F 3 HOH B 98 498 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 V9S . . . D 2 -4.004 0.313 -24.056 1 22.88 ? S1 V9S 301 B 1 HETATM 2 C C17 V9S . . . D 2 -4.233 2.729 -28.218 1 26.19 ? C17 V9S 301 B 1 HETATM 3 C C21 V9S . . . D 2 -3.98 4.717 -29.503 1 25.8 ? C21 V9S 301 B 1 HETATM 4 C C31 V9S . . . D 2 -10.907 6.515 -20.242 1 27.89 ? C31 V9S 301 B 1 HETATM 5 O O2 V9S . . . D 2 -6.947 9.556 -26.845 1 29.9 ? O2 V9S 301 B 1 HETATM 6 C C27 V9S . . . D 2 -7.623 8.78 -26.156 1 28.16 ? C27 V9S 301 B 1 HETATM 7 O O3 V9S . . . D 2 -8.819 9.119 -25.719 1 29.88 ? O3 V9S 301 B 1 HETATM 8 C C26 V9S . . . D 2 -7.107 7.441 -25.767 1 25.02 ? C26 V9S 301 B 1 HETATM 9 C C25 V9S . . . D 2 -7.361 6.95 -24.499 1 24.17 ? C25 V9S 301 B 1 HETATM 10 O O4 V9S . . . D 2 -8.114 7.715 -23.638 1 23.65 ? O4 V9S 301 B 1 HETATM 11 C C28 V9S . . . D 2 -8.531 7.095 -22.428 1 24.85 ? C28 V9S 301 B 1 HETATM 12 C C29 V9S . . . D 2 -9.519 7.997 -21.742 1 25.64 ? C29 V9S 301 B 1 HETATM 13 C C30 V9S . . . D 2 -9.858 7.417 -20.387 1 27.73 ? C30 V9S 301 B 1 HETATM 14 C C35 V9S . . . D 2 -9.127 7.792 -19.253 1 29.78 ? C35 V9S 301 B 1 HETATM 15 C C34 V9S . . . D 2 -9.441 7.27 -17.999 1 28.16 ? C34 V9S 301 B 1 HETATM 16 C C33 V9S . . . D 2 -10.48 6.357 -17.886 1 27.86 ? C33 V9S 301 B 1 HETATM 17 C C32 V9S . . . D 2 -11.215 6.001 -18.992 1 27.14 ? C32 V9S 301 B 1 HETATM 18 C C24 V9S . . . D 2 -6.863 5.691 -24.167 1 24.1 ? C24 V9S 301 B 1 HETATM 19 C C23 V9S . . . D 2 -6.128 4.982 -25.098 1 23.82 ? C23 V9S 301 B 1 HETATM 20 N N5 V9S . . . D 2 -6.398 6.738 -26.67 1 24.32 ? N5 V9S 301 B 1 HETATM 21 C C22 V9S . . . D 2 -5.882 5.532 -26.359 1 24.06 ? C22 V9S 301 B 1 HETATM 22 C C19 V9S . . . D 2 -5.129 4.791 -27.396 1 23.78 ? C19 V9S 301 B 1 HETATM 23 C C20 V9S . . . D 2 -4.678 5.424 -28.543 1 25.08 ? C20 V9S 301 B 1 HETATM 24 C C16 V9S . . . D 2 -3.764 3.358 -29.35 1 25.71 ? C16 V9S 301 B 1 HETATM 25 C C15 V9S . . . D 2 -2.962 2.618 -30.392 1 25.37 ? C15 V9S 301 B 1 HETATM 26 C C14 V9S . . . D 2 -2.572 1.206 -29.986 1 26.1 ? C14 V9S 301 B 1 HETATM 27 C C13 V9S . . . D 2 -3.693 0.467 -29.257 1 24.69 ? C13 V9S 301 B 1 HETATM 28 C C18 V9S . . . D 2 -4.912 3.44 -27.25 1 26.1 ? C18 V9S 301 B 1 HETATM 29 C C12 V9S . . . D 2 -3.983 1.28 -28.029 1 26 ? C12 V9S 301 B 1 HETATM 30 N N4 V9S . . . D 2 -4.421 0.712 -26.923 1 26.67 ? N4 V9S 301 B 1 HETATM 31 N N3 V9S . . . D 2 -4.259 -0.523 -26.546 1 24.95 ? N3 V9S 301 B 1 HETATM 32 C C10 V9S . . . D 2 -4.147 -0.817 -25.279 1 23.86 ? C10 V9S 301 B 1 HETATM 33 N N2 V9S . . . D 2 -4.171 -2.072 -24.812 1 21.95 ? N2 V9S 301 B 1 HETATM 34 C C11 V9S . . . D 2 -3.932 -0.819 -22.851 1 23.24 ? C11 V9S 301 B 1 HETATM 35 C C9 V9S . . . D 2 -4.02 -2.087 -23.447 1 22.22 ? C9 V9S 301 B 1 HETATM 36 C C8 V9S . . . D 2 -4.097 -3.387 -22.715 1 24.9 ? C8 V9S 301 B 1 HETATM 37 O O1 V9S . . . D 2 -4.058 -3.359 -21.487 1 24.97 ? O1 V9S 301 B 1 HETATM 38 N N1 V9S . . . D 2 -4.353 -4.524 -23.386 1 23.96 ? N1 V9S 301 B 1 HETATM 39 C C7 V9S . . . D 2 -4.525 -5.794 -22.694 1 25.45 ? C7 V9S 301 B 1 HETATM 40 C C4 V9S . . . D 2 -6.009 -6.139 -22.573 1 25.27 ? C4 V9S 301 B 1 HETATM 41 C C3 V9S . . . D 2 -6.453 -6.883 -21.465 1 27.1 ? C3 V9S 301 B 1 HETATM 42 C C1 V9S . . . D 2 -7.793 -7.25 -21.32 1 24.81 ? C1 V9S 301 B 1 HETATM 43 C C5 V9S . . . D 2 -6.944 -5.763 -23.539 1 25.78 ? C5 V9S 301 B 1 HETATM 44 C C6 V9S . . . D 2 -8.302 -6.109 -23.396 1 26.4 ? C6 V9S 301 B 1 HETATM 45 C C2 V9S . . . D 2 -8.705 -6.857 -22.289 1 27.23 ? C2 V9S 301 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #