data_7JH2 # _model_server_result.job_id 8AMsm_bgLu345IryuuOLnQ _model_server_result.datetime_utc '2024-11-22 19:33:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jh2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7JH2 # _exptl.entry_id 7JH2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 758.678 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-({[2-(4-{(3R)-1-(4-acetylpiperazine-1-carbonyl)-3-[(4-fluorophenyl)sulfonyl]pyrrolidin-3-yl}phenyl)-1,1,1,3,3,3-hexafluoropropan-2-yl]oxy}methyl)-3-fluorobenzonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JH2 _cell.length_a 110.737 _cell.length_b 110.737 _cell.length_c 96.975 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JH2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C34 H30 F8 N4 O5 S' _chem_comp.formula_weight 758.678 _chem_comp.id VBG _chem_comp.mon_nstd_flag . _chem_comp.name 2-({[2-(4-{(3R)-1-(4-acetylpiperazine-1-carbonyl)-3-[(4-fluorophenyl)sulfonyl]pyrrolidin-3-yl}phenyl)-1,1,1,3,3,3-hexafluoropropan-2-yl]oxy}methyl)-3-fluorobenzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F5 C25 VBG sing 380 n n F6 C25 VBG sing 381 n n C25 F4 VBG sing 382 n n C25 C23 VBG sing 383 n n C C5 VBG doub 384 n y C C1 VBG sing 385 n y C5 C4 VBG sing 386 n y C9 C8 VBG sing 387 n n C9 C6 VBG sing 388 n n O2 S VBG doub 389 n n C8 N VBG sing 390 n n F7 C28 VBG sing 391 n n C1 C23 VBG sing 392 n n C1 C2 VBG doub 393 n y C23 O4 VBG sing 394 n n C23 C24 VBG sing 395 n n C4 C6 VBG sing 396 n n C4 C3 VBG doub 397 n y C6 S VBG sing 398 n n C6 C7 VBG sing 399 n n S O3 VBG doub 400 n n S C17 VBG sing 401 n n F2 C24 VBG sing 402 n n C26 O4 VBG sing 403 n n C26 C27 VBG sing 404 n n C11 N1 VBG sing 405 n n C11 C12 VBG sing 406 n n F3 C24 VBG sing 407 n n C24 F1 VBG sing 408 n n N C7 VBG sing 409 n n N C10 VBG sing 410 n n C28 C27 VBG doub 411 n y C28 C29 VBG sing 412 n y C2 C3 VBG sing 413 n y C27 C32 VBG sing 414 n y N1 C10 VBG sing 415 n n N1 C14 VBG sing 416 n n C22 C17 VBG doub 417 n y C22 C21 VBG sing 418 n y C17 C18 VBG sing 419 n y C12 N2 VBG sing 420 n n C16 C15 VBG sing 421 n n C10 O VBG doub 422 n n C29 C30 VBG doub 423 n y C14 C13 VBG sing 424 n n C32 C33 VBG sing 425 n n C32 C31 VBG doub 426 n y N2 C15 VBG sing 427 n n N2 C13 VBG sing 428 n n C21 C20 VBG doub 429 n y C15 O1 VBG doub 430 n n C33 N3 VBG trip 431 n n C18 C19 VBG doub 432 n y C30 C31 VBG sing 433 n y C20 C19 VBG sing 434 n y C20 F VBG sing 435 n n C2 H1 VBG sing 436 n n C3 H2 VBG sing 437 n n C5 H3 VBG sing 438 n n C29 H4 VBG sing 439 n n C30 H5 VBG sing 440 n n C31 H6 VBG sing 441 n n C26 H7 VBG sing 442 n n C26 H8 VBG sing 443 n n C H9 VBG sing 444 n n C22 H10 VBG sing 445 n n C21 H11 VBG sing 446 n n C19 H12 VBG sing 447 n n C18 H13 VBG sing 448 n n C9 H14 VBG sing 449 n n C9 H15 VBG sing 450 n n C8 H16 VBG sing 451 n n C8 H17 VBG sing 452 n n C7 H18 VBG sing 453 n n C7 H19 VBG sing 454 n n C14 H20 VBG sing 455 n n C14 H21 VBG sing 456 n n C13 H22 VBG sing 457 n n C13 H23 VBG sing 458 n n C16 H24 VBG sing 459 n n C16 H25 VBG sing 460 n n C16 H26 VBG sing 461 n n C12 H27 VBG sing 462 n n C12 H28 VBG sing 463 n n C11 H29 VBG sing 464 n n C11 H30 VBG sing 465 n n # _atom_sites.entry_id 7JH2 _atom_sites.fract_transf_matrix[1][1] 0.00903 _atom_sites.fract_transf_matrix[1][2] 0.005214 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VBG A 1 501 4000 VBG Z8E . D 3 SO4 A 1 502 1 SO4 SO4 . E 2 VBG B 1 501 4000 VBG Z8E . F 3 SO4 B 1 502 2 SO4 SO4 . G 4 HOH A 1 601 66 HOH HOH . G 4 HOH A 2 602 33 HOH HOH . G 4 HOH A 3 603 59 HOH HOH . G 4 HOH A 4 604 58 HOH HOH . G 4 HOH A 5 605 55 HOH HOH . G 4 HOH A 6 606 21 HOH HOH . G 4 HOH A 7 607 56 HOH HOH . G 4 HOH A 8 608 10 HOH HOH . G 4 HOH A 9 609 4 HOH HOH . G 4 HOH A 10 610 67 HOH HOH . G 4 HOH A 11 611 52 HOH HOH . G 4 HOH A 12 612 7 HOH HOH . G 4 HOH A 13 613 63 HOH HOH . G 4 HOH A 14 614 64 HOH HOH . G 4 HOH A 15 615 38 HOH HOH . G 4 HOH A 16 616 6 HOH HOH . G 4 HOH A 17 617 49 HOH HOH . G 4 HOH A 18 618 15 HOH HOH . G 4 HOH A 19 619 46 HOH HOH . G 4 HOH A 20 620 20 HOH HOH . G 4 HOH A 21 621 72 HOH HOH . G 4 HOH A 22 622 42 HOH HOH . G 4 HOH A 23 623 45 HOH HOH . G 4 HOH A 24 624 43 HOH HOH . G 4 HOH A 25 625 65 HOH HOH . G 4 HOH A 26 626 47 HOH HOH . G 4 HOH A 27 627 61 HOH HOH . G 4 HOH A 28 628 44 HOH HOH . H 4 HOH B 1 601 19 HOH HOH . H 4 HOH B 2 602 27 HOH HOH . H 4 HOH B 3 603 35 HOH HOH . H 4 HOH B 4 604 18 HOH HOH . H 4 HOH B 5 605 39 HOH HOH . H 4 HOH B 6 606 22 HOH HOH . H 4 HOH B 7 607 11 HOH HOH . H 4 HOH B 8 608 25 HOH HOH . H 4 HOH B 9 609 60 HOH HOH . H 4 HOH B 10 610 53 HOH HOH . H 4 HOH B 11 611 54 HOH HOH . H 4 HOH B 12 612 17 HOH HOH . H 4 HOH B 13 613 50 HOH HOH . H 4 HOH B 14 614 32 HOH HOH . H 4 HOH B 15 615 8 HOH HOH . H 4 HOH B 16 616 13 HOH HOH . H 4 HOH B 17 617 68 HOH HOH . H 4 HOH B 18 618 12 HOH HOH . H 4 HOH B 19 619 34 HOH HOH . H 4 HOH B 20 620 36 HOH HOH . H 4 HOH B 21 621 14 HOH HOH . H 4 HOH B 22 622 24 HOH HOH . H 4 HOH B 23 623 37 HOH HOH . H 4 HOH B 24 624 74 HOH HOH . H 4 HOH B 25 625 62 HOH HOH . H 4 HOH B 26 626 26 HOH HOH . H 4 HOH B 27 627 3 HOH HOH . H 4 HOH B 28 628 41 HOH HOH . H 4 HOH B 29 629 76 HOH HOH . H 4 HOH B 30 630 40 HOH HOH . H 4 HOH B 31 631 9 HOH HOH . H 4 HOH B 32 632 69 HOH HOH . H 4 HOH B 33 633 51 HOH HOH . H 4 HOH B 34 634 5 HOH HOH . H 4 HOH B 35 635 48 HOH HOH . H 4 HOH B 36 636 75 HOH HOH . H 4 HOH B 37 637 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 VBG . . . C 2 115.98 31.175 -2.319 1 49.13 ? O1 VBG 501 A 1 HETATM 2 O O2 VBG . . . C 2 125.879 29.626 -6.592 1 60.99 ? O2 VBG 501 A 1 HETATM 3 O O3 VBG . . . C 2 123.906 29.278 -5.143 1 61.43 ? O3 VBG 501 A 1 HETATM 4 O O4 VBG . . . C 2 130.398 35.398 -4.986 1 60.16 ? O4 VBG 501 A 1 HETATM 5 C C1 VBG . . . C 2 128.618 33.792 -5.667 1 57.52 ? C1 VBG 501 A 1 HETATM 6 C C2 VBG . . . C 2 127.857 33.831 -4.503 1 56.71 ? C2 VBG 501 A 1 HETATM 7 C C3 VBG . . . C 2 126.588 33.285 -4.464 1 56.32 ? C3 VBG 501 A 1 HETATM 8 C C4 VBG . . . C 2 126.035 32.673 -5.582 1 56.43 ? C4 VBG 501 A 1 HETATM 9 C C5 VBG . . . C 2 126.761 32.717 -6.763 1 56.23 ? C5 VBG 501 A 1 HETATM 10 C C6 VBG . . . C 2 124.759 31.844 -5.481 1 57.06 ? C6 VBG 501 A 1 HETATM 11 F F7 VBG . . . C 2 132.037 38.145 -5.7 1 65.39 ? F7 VBG 501 A 1 HETATM 12 C C28 VBG . . . C 2 131.301 38.434 -4.597 1 64.51 ? C28 VBG 501 A 1 HETATM 13 C C29 VBG . . . C 2 131.784 39.372 -3.718 1 64.33 ? C29 VBG 501 A 1 HETATM 14 C C30 VBG . . . C 2 131.108 39.562 -2.525 1 64.24 ? C30 VBG 501 A 1 HETATM 15 C C31 VBG . . . C 2 129.95 38.856 -2.258 1 63.76 ? C31 VBG 501 A 1 HETATM 16 C C32 VBG . . . C 2 129.442 37.957 -3.195 1 63.69 ? C32 VBG 501 A 1 HETATM 17 C C33 VBG . . . C 2 128.126 37.414 -2.986 1 63.81 ? C33 VBG 501 A 1 HETATM 18 N N3 VBG . . . C 2 127.072 37.023 -2.794 1 64.19 ? N3 VBG 501 A 1 HETATM 19 C C27 VBG . . . C 2 130.144 37.703 -4.387 1 63.49 ? C27 VBG 501 A 1 HETATM 20 C C26 VBG . . . C 2 129.71 36.612 -5.343 1 61.81 ? C26 VBG 501 A 1 HETATM 21 C C23 VBG . . . C 2 130.134 34.139 -5.645 1 59.03 ? C23 VBG 501 A 1 HETATM 22 C C24 VBG . . . C 2 130.962 33.085 -4.87 1 58.23 ? C24 VBG 501 A 1 HETATM 23 F F3 VBG . . . C 2 132.26 33.372 -4.886 1 57.84 ? F3 VBG 501 A 1 HETATM 24 F F2 VBG . . . C 2 130.82 31.866 -5.389 1 57.67 ? F2 VBG 501 A 1 HETATM 25 F F1 VBG . . . C 2 130.598 33.011 -3.591 1 58.02 ? F1 VBG 501 A 1 HETATM 26 C C25 VBG . . . C 2 130.762 34.291 -7.057 1 59.8 ? C25 VBG 501 A 1 HETATM 27 F F6 VBG . . . C 2 130.893 33.113 -7.669 1 59.78 ? F6 VBG 501 A 1 HETATM 28 F F5 VBG . . . C 2 130.037 35.073 -7.852 1 59.88 ? F5 VBG 501 A 1 HETATM 29 F F4 VBG . . . C 2 131.977 34.827 -7.002 1 60.33 ? F4 VBG 501 A 1 HETATM 30 C C VBG . . . C 2 128.028 33.262 -6.806 1 56.45 ? C VBG 501 A 1 HETATM 31 S S VBG . . . C 2 125.136 29.975 -5.412 1 60.43 ? S VBG 501 A 1 HETATM 32 C C17 VBG . . . C 2 126.203 29.791 -4.023 1 59.89 ? C17 VBG 501 A 1 HETATM 33 C C22 VBG . . . C 2 127.556 30.015 -4.189 1 60.22 ? C22 VBG 501 A 1 HETATM 34 C C21 VBG . . . C 2 128.35 30.227 -3.081 1 60.6 ? C21 VBG 501 A 1 HETATM 35 C C20 VBG . . . C 2 127.773 30.153 -1.846 1 60.76 ? C20 VBG 501 A 1 HETATM 36 F F VBG . . . C 2 128.536 30.466 -0.764 1 61.41 ? F VBG 501 A 1 HETATM 37 C C19 VBG . . . C 2 126.458 29.827 -1.653 1 60.11 ? C19 VBG 501 A 1 HETATM 38 C C18 VBG . . . C 2 125.658 29.643 -2.763 1 59.57 ? C18 VBG 501 A 1 HETATM 39 C C9 VBG . . . C 2 123.799 32.128 -6.666 1 55.74 ? C9 VBG 501 A 1 HETATM 40 C C8 VBG . . . C 2 122.383 32.216 -6.131 1 54.71 ? C8 VBG 501 A 1 HETATM 41 N N VBG . . . C 2 122.535 31.952 -4.705 1 54.37 ? N VBG 501 A 1 HETATM 42 C C7 VBG . . . C 2 123.869 32.371 -4.311 1 55.62 ? C7 VBG 501 A 1 HETATM 43 C C10 VBG . . . C 2 121.661 31.384 -3.826 1 53.06 ? C10 VBG 501 A 1 HETATM 44 O O VBG . . . C 2 122.054 31.037 -2.727 1 52.92 ? O VBG 501 A 1 HETATM 45 N N1 VBG . . . C 2 120.371 31.124 -4.283 1 51.89 ? N1 VBG 501 A 1 HETATM 46 C C14 VBG . . . C 2 119.562 30.166 -3.514 1 51.2 ? C14 VBG 501 A 1 HETATM 47 C C13 VBG . . . C 2 118.7 30.908 -2.503 1 50.69 ? C13 VBG 501 A 1 HETATM 48 N N2 VBG . . . C 2 117.902 31.946 -3.176 1 50.34 ? N2 VBG 501 A 1 HETATM 49 C C15 VBG . . . C 2 116.544 31.952 -3.064 1 49.13 ? C15 VBG 501 A 1 HETATM 50 C C16 VBG . . . C 2 115.768 32.969 -3.842 1 48.18 ? C16 VBG 501 A 1 HETATM 51 C C12 VBG . . . C 2 118.729 32.888 -3.947 1 50.69 ? C12 VBG 501 A 1 HETATM 52 C C11 VBG . . . C 2 119.546 32.131 -4.965 1 50.92 ? C11 VBG 501 A 1 # _model_server_stats.io_time_ms 121 _model_server_stats.parse_time_ms 128 _model_server_stats.create_model_time_ms 81 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 52 #