data_7JH2 # _model_server_result.job_id b-hh7Jqpx3nc3GLBPy95Aw _model_server_result.datetime_utc '2024-11-22 20:03:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jh2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7JH2 # _exptl.entry_id 7JH2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 758.678 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-({[2-(4-{(3R)-1-(4-acetylpiperazine-1-carbonyl)-3-[(4-fluorophenyl)sulfonyl]pyrrolidin-3-yl}phenyl)-1,1,1,3,3,3-hexafluoropropan-2-yl]oxy}methyl)-3-fluorobenzonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JH2 _cell.length_a 110.737 _cell.length_b 110.737 _cell.length_c 96.975 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JH2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C34 H30 F8 N4 O5 S' _chem_comp.formula_weight 758.678 _chem_comp.id VBG _chem_comp.mon_nstd_flag . _chem_comp.name 2-({[2-(4-{(3R)-1-(4-acetylpiperazine-1-carbonyl)-3-[(4-fluorophenyl)sulfonyl]pyrrolidin-3-yl}phenyl)-1,1,1,3,3,3-hexafluoropropan-2-yl]oxy}methyl)-3-fluorobenzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F5 C25 VBG sing 380 n n F6 C25 VBG sing 381 n n C25 F4 VBG sing 382 n n C25 C23 VBG sing 383 n n C C5 VBG doub 384 n y C C1 VBG sing 385 n y C5 C4 VBG sing 386 n y C9 C8 VBG sing 387 n n C9 C6 VBG sing 388 n n O2 S VBG doub 389 n n C8 N VBG sing 390 n n F7 C28 VBG sing 391 n n C1 C23 VBG sing 392 n n C1 C2 VBG doub 393 n y C23 O4 VBG sing 394 n n C23 C24 VBG sing 395 n n C4 C6 VBG sing 396 n n C4 C3 VBG doub 397 n y C6 S VBG sing 398 n n C6 C7 VBG sing 399 n n S O3 VBG doub 400 n n S C17 VBG sing 401 n n F2 C24 VBG sing 402 n n C26 O4 VBG sing 403 n n C26 C27 VBG sing 404 n n C11 N1 VBG sing 405 n n C11 C12 VBG sing 406 n n F3 C24 VBG sing 407 n n C24 F1 VBG sing 408 n n N C7 VBG sing 409 n n N C10 VBG sing 410 n n C28 C27 VBG doub 411 n y C28 C29 VBG sing 412 n y C2 C3 VBG sing 413 n y C27 C32 VBG sing 414 n y N1 C10 VBG sing 415 n n N1 C14 VBG sing 416 n n C22 C17 VBG doub 417 n y C22 C21 VBG sing 418 n y C17 C18 VBG sing 419 n y C12 N2 VBG sing 420 n n C16 C15 VBG sing 421 n n C10 O VBG doub 422 n n C29 C30 VBG doub 423 n y C14 C13 VBG sing 424 n n C32 C33 VBG sing 425 n n C32 C31 VBG doub 426 n y N2 C15 VBG sing 427 n n N2 C13 VBG sing 428 n n C21 C20 VBG doub 429 n y C15 O1 VBG doub 430 n n C33 N3 VBG trip 431 n n C18 C19 VBG doub 432 n y C30 C31 VBG sing 433 n y C20 C19 VBG sing 434 n y C20 F VBG sing 435 n n C2 H1 VBG sing 436 n n C3 H2 VBG sing 437 n n C5 H3 VBG sing 438 n n C29 H4 VBG sing 439 n n C30 H5 VBG sing 440 n n C31 H6 VBG sing 441 n n C26 H7 VBG sing 442 n n C26 H8 VBG sing 443 n n C H9 VBG sing 444 n n C22 H10 VBG sing 445 n n C21 H11 VBG sing 446 n n C19 H12 VBG sing 447 n n C18 H13 VBG sing 448 n n C9 H14 VBG sing 449 n n C9 H15 VBG sing 450 n n C8 H16 VBG sing 451 n n C8 H17 VBG sing 452 n n C7 H18 VBG sing 453 n n C7 H19 VBG sing 454 n n C14 H20 VBG sing 455 n n C14 H21 VBG sing 456 n n C13 H22 VBG sing 457 n n C13 H23 VBG sing 458 n n C16 H24 VBG sing 459 n n C16 H25 VBG sing 460 n n C16 H26 VBG sing 461 n n C12 H27 VBG sing 462 n n C12 H28 VBG sing 463 n n C11 H29 VBG sing 464 n n C11 H30 VBG sing 465 n n # _atom_sites.entry_id 7JH2 _atom_sites.fract_transf_matrix[1][1] 0.00903 _atom_sites.fract_transf_matrix[1][2] 0.005214 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VBG A 1 501 4000 VBG Z8E . D 3 SO4 A 1 502 1 SO4 SO4 . E 2 VBG B 1 501 4000 VBG Z8E . F 3 SO4 B 1 502 2 SO4 SO4 . G 4 HOH A 1 601 66 HOH HOH . G 4 HOH A 2 602 33 HOH HOH . G 4 HOH A 3 603 59 HOH HOH . G 4 HOH A 4 604 58 HOH HOH . G 4 HOH A 5 605 55 HOH HOH . G 4 HOH A 6 606 21 HOH HOH . G 4 HOH A 7 607 56 HOH HOH . G 4 HOH A 8 608 10 HOH HOH . G 4 HOH A 9 609 4 HOH HOH . G 4 HOH A 10 610 67 HOH HOH . G 4 HOH A 11 611 52 HOH HOH . G 4 HOH A 12 612 7 HOH HOH . G 4 HOH A 13 613 63 HOH HOH . G 4 HOH A 14 614 64 HOH HOH . G 4 HOH A 15 615 38 HOH HOH . G 4 HOH A 16 616 6 HOH HOH . G 4 HOH A 17 617 49 HOH HOH . G 4 HOH A 18 618 15 HOH HOH . G 4 HOH A 19 619 46 HOH HOH . G 4 HOH A 20 620 20 HOH HOH . G 4 HOH A 21 621 72 HOH HOH . G 4 HOH A 22 622 42 HOH HOH . G 4 HOH A 23 623 45 HOH HOH . G 4 HOH A 24 624 43 HOH HOH . G 4 HOH A 25 625 65 HOH HOH . G 4 HOH A 26 626 47 HOH HOH . G 4 HOH A 27 627 61 HOH HOH . G 4 HOH A 28 628 44 HOH HOH . H 4 HOH B 1 601 19 HOH HOH . H 4 HOH B 2 602 27 HOH HOH . H 4 HOH B 3 603 35 HOH HOH . H 4 HOH B 4 604 18 HOH HOH . H 4 HOH B 5 605 39 HOH HOH . H 4 HOH B 6 606 22 HOH HOH . H 4 HOH B 7 607 11 HOH HOH . H 4 HOH B 8 608 25 HOH HOH . H 4 HOH B 9 609 60 HOH HOH . H 4 HOH B 10 610 53 HOH HOH . H 4 HOH B 11 611 54 HOH HOH . H 4 HOH B 12 612 17 HOH HOH . H 4 HOH B 13 613 50 HOH HOH . H 4 HOH B 14 614 32 HOH HOH . H 4 HOH B 15 615 8 HOH HOH . H 4 HOH B 16 616 13 HOH HOH . H 4 HOH B 17 617 68 HOH HOH . H 4 HOH B 18 618 12 HOH HOH . H 4 HOH B 19 619 34 HOH HOH . H 4 HOH B 20 620 36 HOH HOH . H 4 HOH B 21 621 14 HOH HOH . H 4 HOH B 22 622 24 HOH HOH . H 4 HOH B 23 623 37 HOH HOH . H 4 HOH B 24 624 74 HOH HOH . H 4 HOH B 25 625 62 HOH HOH . H 4 HOH B 26 626 26 HOH HOH . H 4 HOH B 27 627 3 HOH HOH . H 4 HOH B 28 628 41 HOH HOH . H 4 HOH B 29 629 76 HOH HOH . H 4 HOH B 30 630 40 HOH HOH . H 4 HOH B 31 631 9 HOH HOH . H 4 HOH B 32 632 69 HOH HOH . H 4 HOH B 33 633 51 HOH HOH . H 4 HOH B 34 634 5 HOH HOH . H 4 HOH B 35 635 48 HOH HOH . H 4 HOH B 36 636 75 HOH HOH . H 4 HOH B 37 637 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 VBG . . . E 2 94.744 26.654 -20.434 1 45.81 ? O1 VBG 501 B 1 HETATM 2 O O2 VBG . . . E 2 86.352 21.847 -15.931 1 57.03 ? O2 VBG 501 B 1 HETATM 3 O O3 VBG . . . E 2 88.189 22.338 -17.521 1 57.66 ? O3 VBG 501 B 1 HETATM 4 O O4 VBG . . . E 2 80.157 26.058 -16.674 1 59.57 ? O4 VBG 501 B 1 HETATM 5 C C1 VBG . . . E 2 82.303 24.938 -16.234 1 55.6 ? C1 VBG 501 B 1 HETATM 6 C C2 VBG . . . E 2 82.909 25.334 -17.419 1 54.69 ? C2 VBG 501 B 1 HETATM 7 C C3 VBG . . . E 2 84.277 25.257 -17.577 1 53.88 ? C3 VBG 501 B 1 HETATM 8 C C4 VBG . . . E 2 85.089 24.741 -16.575 1 53.36 ? C4 VBG 501 B 1 HETATM 9 C C5 VBG . . . E 2 84.489 24.399 -15.374 1 53.81 ? C5 VBG 501 B 1 HETATM 10 C C6 VBG . . . E 2 86.549 24.404 -16.844 1 53.41 ? C6 VBG 501 B 1 HETATM 11 F F7 VBG . . . E 2 78.041 28.269 -15.714 1 65.04 ? F7 VBG 501 B 1 HETATM 12 C C28 VBG . . . E 2 78.568 28.753 -16.864 1 64.38 ? C28 VBG 501 B 1 HETATM 13 C C29 VBG . . . E 2 77.796 29.587 -17.632 1 64.42 ? C29 VBG 501 B 1 HETATM 14 C C30 VBG . . . E 2 78.336 30.086 -18.802 1 64.5 ? C30 VBG 501 B 1 HETATM 15 C C31 VBG . . . E 2 79.628 29.761 -19.17 1 64.57 ? C31 VBG 501 B 1 HETATM 16 C C32 VBG . . . E 2 80.394 28.915 -18.371 1 64.56 ? C32 VBG 501 B 1 HETATM 17 C C33 VBG . . . E 2 81.754 28.629 -18.732 1 65.53 ? C33 VBG 501 B 1 HETATM 18 N N3 VBG . . . E 2 82.833 28.432 -19.043 1 66.52 ? N3 VBG 501 B 1 HETATM 19 C C27 VBG . . . E 2 79.858 28.375 -17.189 1 63.65 ? C27 VBG 501 B 1 HETATM 20 C C26 VBG . . . E 2 80.638 27.381 -16.361 1 61.81 ? C26 VBG 501 B 1 HETATM 21 C C23 VBG . . . E 2 80.775 24.89 -16.108 1 57.8 ? C23 VBG 501 B 1 HETATM 22 C C24 VBG . . . E 2 80.15 23.705 -16.884 1 57.23 ? C24 VBG 501 B 1 HETATM 23 F F3 VBG . . . E 2 78.876 23.515 -16.557 1 57.31 ? F3 VBG 501 B 1 HETATM 24 F F2 VBG . . . E 2 80.79 22.558 -16.65 1 56.25 ? F2 VBG 501 B 1 HETATM 25 F F1 VBG . . . E 2 80.184 23.919 -18.197 1 57.32 ? F1 VBG 501 B 1 HETATM 26 C C25 VBG . . . E 2 80.252 24.894 -14.65 1 58.9 ? C25 VBG 501 B 1 HETATM 27 F F6 VBG . . . E 2 80.369 23.689 -14.096 1 59.14 ? F6 VBG 501 B 1 HETATM 28 F F5 VBG . . . E 2 80.896 25.748 -13.865 1 58.94 ? F5 VBG 501 B 1 HETATM 29 F F4 VBG . . . E 2 78.966 25.229 -14.596 1 59.56 ? F4 VBG 501 B 1 HETATM 30 C C VBG . . . E 2 83.123 24.493 -15.207 1 54.6 ? C VBG 501 B 1 HETATM 31 S S VBG . . . E 2 86.826 22.532 -17.104 1 56.83 ? S VBG 501 B 1 HETATM 32 C C17 VBG . . . E 2 85.779 22.085 -18.446 1 56.47 ? C17 VBG 501 B 1 HETATM 33 C C22 VBG . . . E 2 84.429 21.916 -18.213 1 56.44 ? C22 VBG 501 B 1 HETATM 34 C C21 VBG . . . E 2 83.553 21.91 -19.278 1 56.99 ? C21 VBG 501 B 1 HETATM 35 C C20 VBG . . . E 2 84.064 22.018 -20.54 1 57.59 ? C20 VBG 501 B 1 HETATM 36 F F VBG . . . E 2 83.195 22.117 -21.576 1 58.96 ? F VBG 501 B 1 HETATM 37 C C19 VBG . . . E 2 85.403 22.082 -20.802 1 56.88 ? C19 VBG 501 B 1 HETATM 38 C C18 VBG . . . E 2 86.279 22.114 -19.734 1 56.53 ? C18 VBG 501 B 1 HETATM 39 C C9 VBG . . . E 2 87.473 24.93 -15.711 1 51.88 ? C9 VBG 501 B 1 HETATM 40 C C8 VBG . . . E 2 88.612 25.686 -16.379 1 50.99 ? C8 VBG 501 B 1 HETATM 41 N N VBG . . . E 2 88.488 25.32 -17.787 1 50.31 ? N VBG 501 B 1 HETATM 42 C C7 VBG . . . E 2 87.066 25.242 -18.06 1 51.6 ? C7 VBG 501 B 1 HETATM 43 C C10 VBG . . . E 2 89.438 24.981 -18.716 1 48.57 ? C10 VBG 501 B 1 HETATM 44 O O VBG . . . E 2 89.083 24.562 -19.803 1 48.26 ? O VBG 501 B 1 HETATM 45 N N1 VBG . . . E 2 90.78 25.043 -18.325 1 47.64 ? N1 VBG 501 B 1 HETATM 46 C C14 VBG . . . E 2 91.766 24.514 -19.279 1 47.13 ? C14 VBG 501 B 1 HETATM 47 C C13 VBG . . . E 2 92.214 25.625 -20.211 1 47.11 ? C13 VBG 501 B 1 HETATM 48 N N2 VBG . . . E 2 92.74 26.748 -19.422 1 47.17 ? N2 VBG 501 B 1 HETATM 49 C C15 VBG . . . E 2 94.019 27.182 -19.602 1 46.15 ? C15 VBG 501 B 1 HETATM 50 C C16 VBG . . . E 2 94.511 28.308 -18.752 1 45.16 ? C16 VBG 501 B 1 HETATM 51 C C12 VBG . . . E 2 91.765 27.265 -18.446 1 47.19 ? C12 VBG 501 B 1 HETATM 52 C C11 VBG . . . E 2 91.335 26.147 -17.527 1 47.05 ? C11 VBG 501 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 52 #