data_7JHE # _model_server_result.job_id 2HfHw7bYqgwCY9VOJHH1kw _model_server_result.datetime_utc '2024-11-01 05:22:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jhe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":7102}' # _entry.id 7JHE # _exptl.entry_id 7JHE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JHE _cell.length_a 170.859 _cell.length_b 170.859 _cell.length_c 52.797 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JHE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 77 B CYS 74 1_555 G ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 B SG CYS 80 B CYS 77 1_555 G ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc3 B NE2 HIS 86 B HIS 83 1_555 G ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc4 B SG CYS 93 B CYS 90 1_555 G ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc5 B SG CYS 120 B CYS 117 1_555 H ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc6 B SG CYS 123 B CYS 120 1_555 H ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc7 B SG CYS 131 B CYS 128 1_555 H ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc8 B SG CYS 133 B CYS 130 1_555 H ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 331 n n N HN1 SAH sing 332 n n N HN2 SAH sing 333 n n CA CB SAH sing 334 n n CA C SAH sing 335 n n CA HA SAH sing 336 n n CB CG SAH sing 337 n n CB HB1 SAH sing 338 n n CB HB2 SAH sing 339 n n CG SD SAH sing 340 n n CG HG1 SAH sing 341 n n CG HG2 SAH sing 342 n n SD C5' SAH sing 343 n n C O SAH doub 344 n n C OXT SAH sing 345 n n OXT HXT SAH sing 346 n n C5' C4' SAH sing 347 n n C5' "H5'1" SAH sing 348 n n C5' "H5'2" SAH sing 349 n n C4' O4' SAH sing 350 n n C4' C3' SAH sing 351 n n C4' H4' SAH sing 352 n n O4' C1' SAH sing 353 n n C3' O3' SAH sing 354 n n C3' C2' SAH sing 355 n n C3' H3' SAH sing 356 n n O3' HO3' SAH sing 357 n n C2' O2' SAH sing 358 n n C2' C1' SAH sing 359 n n C2' H2' SAH sing 360 n n O2' HO2' SAH sing 361 n n C1' N9 SAH sing 362 n n C1' H1' SAH sing 363 n n N9 C8 SAH sing 364 n y N9 C4 SAH sing 365 n y C8 N7 SAH doub 366 n y C8 H8 SAH sing 367 n n N7 C5 SAH sing 368 n y C5 C6 SAH sing 369 n y C5 C4 SAH doub 370 n y C6 N6 SAH sing 371 n n C6 N1 SAH doub 372 n y N6 HN61 SAH sing 373 n n N6 HN62 SAH sing 374 n n N1 C2 SAH sing 375 n y C2 N3 SAH doub 376 n y C2 H2 SAH sing 377 n n N3 C4 SAH sing 378 n y # _atom_sites.entry_id 7JHE _atom_sites.fract_transf_matrix[1][1] 0.005853 _atom_sites.fract_transf_matrix[1][2] 0.003379 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006758 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 7101 3 CL CL . D 4 SAH A 1 7102 4 SAH SAH . E 5 V9G A 1 7103 5 V9G G8B . F 6 MGP A 1 7104 6 MGP MGP . G 7 ZN B 1 4401 1 ZN ZN . H 7 ZN B 1 4402 2 ZN ZN . I 8 HOH A 1 7201 94 HOH HOH . I 8 HOH A 2 7202 112 HOH HOH . I 8 HOH A 3 7203 117 HOH HOH . I 8 HOH A 4 7204 143 HOH HOH . I 8 HOH A 5 7205 85 HOH HOH . I 8 HOH A 6 7206 33 HOH HOH . I 8 HOH A 7 7207 93 HOH HOH . I 8 HOH A 8 7208 149 HOH HOH . I 8 HOH A 9 7209 24 HOH HOH . I 8 HOH A 10 7210 75 HOH HOH . I 8 HOH A 11 7211 16 HOH HOH . I 8 HOH A 12 7212 22 HOH HOH . I 8 HOH A 13 7213 21 HOH HOH . I 8 HOH A 14 7214 82 HOH HOH . I 8 HOH A 15 7215 84 HOH HOH . I 8 HOH A 16 7216 115 HOH HOH . I 8 HOH A 17 7217 127 HOH HOH . I 8 HOH A 18 7218 8 HOH HOH . I 8 HOH A 19 7219 92 HOH HOH . I 8 HOH A 20 7220 83 HOH HOH . I 8 HOH A 21 7221 114 HOH HOH . I 8 HOH A 22 7222 29 HOH HOH . I 8 HOH A 23 7223 32 HOH HOH . I 8 HOH A 24 7224 50 HOH HOH . I 8 HOH A 25 7225 139 HOH HOH . I 8 HOH A 26 7226 161 HOH HOH . I 8 HOH A 27 7227 108 HOH HOH . I 8 HOH A 28 7228 141 HOH HOH . I 8 HOH A 29 7229 55 HOH HOH . I 8 HOH A 30 7230 43 HOH HOH . I 8 HOH A 31 7231 45 HOH HOH . I 8 HOH A 32 7232 39 HOH HOH . I 8 HOH A 33 7233 118 HOH HOH . I 8 HOH A 34 7234 81 HOH HOH . I 8 HOH A 35 7235 107 HOH HOH . I 8 HOH A 36 7236 57 HOH HOH . I 8 HOH A 37 7237 145 HOH HOH . I 8 HOH A 38 7238 41 HOH HOH . I 8 HOH A 39 7239 91 HOH HOH . I 8 HOH A 40 7240 18 HOH HOH . I 8 HOH A 41 7241 27 HOH HOH . I 8 HOH A 42 7242 49 HOH HOH . I 8 HOH A 43 7243 23 HOH HOH . I 8 HOH A 44 7244 89 HOH HOH . I 8 HOH A 45 7245 122 HOH HOH . I 8 HOH A 46 7246 104 HOH HOH . I 8 HOH A 47 7247 10 HOH HOH . I 8 HOH A 48 7248 67 HOH HOH . I 8 HOH A 49 7249 126 HOH HOH . I 8 HOH A 50 7250 28 HOH HOH . I 8 HOH A 51 7251 134 HOH HOH . I 8 HOH A 52 7252 98 HOH HOH . I 8 HOH A 53 7253 103 HOH HOH . I 8 HOH A 54 7254 130 HOH HOH . I 8 HOH A 55 7255 14 HOH HOH . I 8 HOH A 56 7256 162 HOH HOH . I 8 HOH A 57 7257 79 HOH HOH . I 8 HOH A 58 7258 160 HOH HOH . I 8 HOH A 59 7259 158 HOH HOH . I 8 HOH A 60 7260 15 HOH HOH . I 8 HOH A 61 7261 142 HOH HOH . I 8 HOH A 62 7262 132 HOH HOH . I 8 HOH A 63 7263 12 HOH HOH . I 8 HOH A 64 7264 124 HOH HOH . I 8 HOH A 65 7265 147 HOH HOH . I 8 HOH A 66 7266 7 HOH HOH . I 8 HOH A 67 7267 36 HOH HOH . I 8 HOH A 68 7268 131 HOH HOH . I 8 HOH A 69 7269 52 HOH HOH . I 8 HOH A 70 7270 95 HOH HOH . I 8 HOH A 71 7271 156 HOH HOH . I 8 HOH A 72 7272 19 HOH HOH . I 8 HOH A 73 7273 123 HOH HOH . I 8 HOH A 74 7274 40 HOH HOH . I 8 HOH A 75 7275 111 HOH HOH . I 8 HOH A 76 7276 54 HOH HOH . I 8 HOH A 77 7277 71 HOH HOH . I 8 HOH A 78 7278 9 HOH HOH . I 8 HOH A 79 7279 25 HOH HOH . I 8 HOH A 80 7280 110 HOH HOH . I 8 HOH A 81 7281 62 HOH HOH . I 8 HOH A 82 7282 13 HOH HOH . I 8 HOH A 83 7283 137 HOH HOH . I 8 HOH A 84 7284 135 HOH HOH . I 8 HOH A 85 7285 66 HOH HOH . I 8 HOH A 86 7286 11 HOH HOH . I 8 HOH A 87 7287 72 HOH HOH . I 8 HOH A 88 7288 44 HOH HOH . I 8 HOH A 89 7289 69 HOH HOH . I 8 HOH A 90 7290 140 HOH HOH . I 8 HOH A 91 7291 70 HOH HOH . I 8 HOH A 92 7292 163 HOH HOH . I 8 HOH A 93 7293 129 HOH HOH . I 8 HOH A 94 7294 34 HOH HOH . I 8 HOH A 95 7295 128 HOH HOH . I 8 HOH A 96 7296 31 HOH HOH . I 8 HOH A 97 7297 113 HOH HOH . I 8 HOH A 98 7298 105 HOH HOH . I 8 HOH A 99 7299 157 HOH HOH . I 8 HOH A 100 7300 133 HOH HOH . I 8 HOH A 101 7301 20 HOH HOH . I 8 HOH A 102 7302 58 HOH HOH . I 8 HOH A 103 7303 121 HOH HOH . I 8 HOH A 104 7304 100 HOH HOH . I 8 HOH A 105 7305 144 HOH HOH . I 8 HOH A 106 7306 146 HOH HOH . I 8 HOH A 107 7307 136 HOH HOH . I 8 HOH A 108 7308 90 HOH HOH . I 8 HOH A 109 7309 97 HOH HOH . I 8 HOH A 110 7310 87 HOH HOH . I 8 HOH A 111 7311 63 HOH HOH . I 8 HOH A 112 7312 64 HOH HOH . I 8 HOH A 113 7313 138 HOH HOH . I 8 HOH A 114 7314 48 HOH HOH . I 8 HOH A 115 7315 17 HOH HOH . I 8 HOH A 116 7316 102 HOH HOH . I 8 HOH A 117 7317 68 HOH HOH . I 8 HOH A 118 7318 65 HOH HOH . I 8 HOH A 119 7319 159 HOH HOH . I 8 HOH A 120 7320 109 HOH HOH . I 8 HOH A 121 7321 148 HOH HOH . I 8 HOH A 122 7322 125 HOH HOH . I 8 HOH A 123 7323 78 HOH HOH . I 8 HOH A 124 7324 106 HOH HOH . I 8 HOH A 125 7325 164 HOH HOH . I 8 HOH A 126 7326 38 HOH HOH . I 8 HOH A 127 7327 80 HOH HOH . I 8 HOH A 128 7328 120 HOH HOH . J 8 HOH B 1 4501 96 HOH HOH . J 8 HOH B 2 4502 37 HOH HOH . J 8 HOH B 3 4503 56 HOH HOH . J 8 HOH B 4 4504 101 HOH HOH . J 8 HOH B 5 4505 60 HOH HOH . J 8 HOH B 6 4506 86 HOH HOH . J 8 HOH B 7 4507 30 HOH HOH . J 8 HOH B 8 4508 35 HOH HOH . J 8 HOH B 9 4509 150 HOH HOH . J 8 HOH B 10 4510 116 HOH HOH . J 8 HOH B 11 4511 155 HOH HOH . J 8 HOH B 12 4512 47 HOH HOH . J 8 HOH B 13 4513 73 HOH HOH . J 8 HOH B 14 4514 76 HOH HOH . J 8 HOH B 15 4515 77 HOH HOH . J 8 HOH B 16 4516 119 HOH HOH . J 8 HOH B 17 4517 152 HOH HOH . J 8 HOH B 18 4518 59 HOH HOH . J 8 HOH B 19 4519 53 HOH HOH . J 8 HOH B 20 4520 151 HOH HOH . J 8 HOH B 21 4521 88 HOH HOH . J 8 HOH B 22 4522 153 HOH HOH . J 8 HOH B 23 4523 61 HOH HOH . J 8 HOH B 24 4524 51 HOH HOH . J 8 HOH B 25 4525 42 HOH HOH . J 8 HOH B 26 4526 154 HOH HOH . J 8 HOH B 27 4527 74 HOH HOH . J 8 HOH B 28 4528 26 HOH HOH . J 8 HOH B 29 4529 99 HOH HOH . J 8 HOH B 30 4530 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 4 87.371 -19.882 24.117 1 23.01 ? N SAH 7102 A 1 HETATM 2 C CA SAH . . . D 4 88.667 -19.269 24.534 1 21.73 ? CA SAH 7102 A 1 HETATM 3 C CB SAH . . . D 4 88.819 -19.289 26.062 1 20.68 ? CB SAH 7102 A 1 HETATM 4 C CG SAH . . . D 4 87.745 -18.472 26.772 1 21.21 ? CG SAH 7102 A 1 HETATM 5 S SD SAH . . . D 4 87.807 -18.481 28.583 1 21.64 ? SD SAH 7102 A 1 HETATM 6 C C SAH . . . D 4 89.819 -20.029 23.86 1 23.3 ? C SAH 7102 A 1 HETATM 7 O O SAH . . . D 4 90.92 -20.138 24.407 1 27.14 ? O SAH 7102 A 1 HETATM 8 O OXT SAH . . . D 4 89.672 -20.549 22.733 1 22.74 ? OXT SAH 7102 A 1 HETATM 9 C C5' SAH . . . D 4 86.316 -17.541 29.013 1 22.94 ? C5' SAH 7102 A 1 HETATM 10 C C4' SAH . . . D 4 86.244 -16.159 28.398 1 24.11 ? C4' SAH 7102 A 1 HETATM 11 O O4' SAH . . . D 4 84.948 -15.573 28.663 1 23.33 ? O4' SAH 7102 A 1 HETATM 12 C C3' SAH . . . D 4 87.277 -15.153 28.935 1 23.78 ? C3' SAH 7102 A 1 HETATM 13 O O3' SAH . . . D 4 88.168 -14.724 27.909 1 23.8 ? O3' SAH 7102 A 1 HETATM 14 C C2' SAH . . . D 4 86.425 -13.994 29.473 1 22.71 ? C2' SAH 7102 A 1 HETATM 15 O O2' SAH . . . D 4 87.007 -12.73 29.24 1 21.8 ? O2' SAH 7102 A 1 HETATM 16 C C1' SAH . . . D 4 85.133 -14.181 28.689 1 23.65 ? C1' SAH 7102 A 1 HETATM 17 N N9 SAH . . . D 4 83.97 -13.534 29.289 1 24.74 ? N9 SAH 7102 A 1 HETATM 18 C C8 SAH . . . D 4 83.504 -13.681 30.572 1 25.3 ? C8 SAH 7102 A 1 HETATM 19 N N7 SAH . . . D 4 82.445 -12.956 30.832 1 24.03 ? N7 SAH 7102 A 1 HETATM 20 C C5 SAH . . . D 4 82.202 -12.272 29.651 1 24.26 ? C5 SAH 7102 A 1 HETATM 21 C C6 SAH . . . D 4 81.211 -11.338 29.286 1 25.28 ? C6 SAH 7102 A 1 HETATM 22 N N6 SAH . . . D 4 80.252 -10.91 30.105 1 23.24 ? N6 SAH 7102 A 1 HETATM 23 N N1 SAH . . . D 4 81.257 -10.848 28.024 1 25.6 ? N1 SAH 7102 A 1 HETATM 24 C C2 SAH . . . D 4 82.222 -11.287 27.202 1 25.5 ? C2 SAH 7102 A 1 HETATM 25 N N3 SAH . . . D 4 83.198 -12.162 27.431 1 23.34 ? N3 SAH 7102 A 1 HETATM 26 C C4 SAH . . . D 4 83.134 -12.622 28.69 1 24.14 ? C4 SAH 7102 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #