data_7JHG # _model_server_result.job_id cSIkrgqLkC8FZbq-MdDoEA _model_server_result.datetime_utc '2025-07-15 19:05:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 7JHG # _exptl.entry_id 7JHG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 399.488 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[4-(2-piperidin-1-ylethoxy)phenyl]-3-pyridin-4-ylpyrazolo[1,5-a]pyrimidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JHG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 8 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n H GLC 1 D 1 GLC M 601 MAL 8 n H GLC 2 D 2 GLC M 601 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 24 L CYS 24 1_555 E SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 E SG CYS 135 L CYS 135 1_555 E SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 F SG CYS 25 H CYS 25 1_555 F SG CYS 99 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 F SG CYS 156 H CYS 156 1_555 F SG CYS 212 H CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 G SG CYS 60 N CYS 31 1_555 G SG CYS 134 N CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 H O4 GLC . D GLC 1 1_555 H C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C24 H25 N5 O' _chem_comp.formula_weight 399.488 _chem_comp.id TAK _chem_comp.mon_nstd_flag . _chem_comp.name 6-[4-(2-piperidin-1-ylethoxy)phenyl]-3-pyridin-4-ylpyrazolo[1,5-a]pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Dorsomorphin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TAK sing 444 n n C1 N1 TAK sing 445 n n C2 C3 TAK sing 446 n n C3 C4 TAK sing 447 n n C4 C5 TAK sing 448 n n C5 N1 TAK sing 449 n n N1 C6 TAK sing 450 n n C6 C7 TAK sing 451 n n C7 O1 TAK sing 452 n n O1 C8 TAK sing 453 n n C8 C9 TAK doub 454 n y C8 C11 TAK sing 455 n y C9 C10 TAK sing 456 n y C10 C13 TAK doub 457 n y C11 C12 TAK doub 458 n y C12 C13 TAK sing 459 n y C13 C14 TAK sing 460 n y C14 C15 TAK doub 461 n y C14 C16 TAK sing 462 n y C15 N3 TAK sing 463 n y C16 N2 TAK doub 464 n y N2 C17 TAK sing 465 n y C17 N3 TAK sing 466 n y C17 C19 TAK doub 467 n y N3 N4 TAK sing 468 n y N4 C18 TAK doub 469 n y C18 C19 TAK sing 470 n y C19 C20 TAK sing 471 n y C20 C21 TAK doub 472 n y C20 C24 TAK sing 473 n y C21 C22 TAK sing 474 n y C22 N5 TAK doub 475 n y N5 C23 TAK sing 476 n y C23 C24 TAK doub 477 n y C1 H1 TAK sing 478 n n C1 H1A TAK sing 479 n n C2 H2 TAK sing 480 n n C2 H2A TAK sing 481 n n C3 H3 TAK sing 482 n n C3 H3A TAK sing 483 n n C4 H4 TAK sing 484 n n C4 H4A TAK sing 485 n n C5 H5 TAK sing 486 n n C5 H5A TAK sing 487 n n C6 H6 TAK sing 488 n n C6 H6A TAK sing 489 n n C7 H7 TAK sing 490 n n C7 H7A TAK sing 491 n n C9 H9 TAK sing 492 n n C10 H10 TAK sing 493 n n C11 H11 TAK sing 494 n n C12 H12 TAK sing 495 n n C15 H15 TAK sing 496 n n C16 H16 TAK sing 497 n n C18 H18 TAK sing 498 n n C21 H21 TAK sing 499 n n C22 H22 TAK sing 500 n n C23 H23 TAK sing 501 n n C24 H24 TAK sing 502 n n # _atom_sites.entry_id 7JHG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 TAK A 1 601 100 TAK TAK . J 10 ATP G 1 401 402 ATP ATP . K 11 ADP G 1 402 403 ADP ADP . L 12 AMP G 1 403 404 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TAK . . . I 9 89.695 126.011 137.895 1 113.33 ? C1 TAK 601 A 1 HETATM 2 C C2 TAK . . . I 9 88.402 126.432 138.599 1 113.33 ? C2 TAK 601 A 1 HETATM 3 C C3 TAK . . . I 9 88.043 127.888 138.289 1 113.33 ? C3 TAK 601 A 1 HETATM 4 C C4 TAK . . . I 9 88.017 128.145 136.779 1 113.33 ? C4 TAK 601 A 1 HETATM 5 C C5 TAK . . . I 9 89.314 127.686 136.105 1 113.33 ? C5 TAK 601 A 1 HETATM 6 N N1 TAK . . . I 9 89.676 126.302 136.452 1 113.33 ? N1 TAK 601 A 1 HETATM 7 C C6 TAK . . . I 9 88.855 125.331 135.716 1 113.33 ? C6 TAK 601 A 1 HETATM 8 C C7 TAK . . . I 9 89.435 125.133 134.314 1 113.33 ? C7 TAK 601 A 1 HETATM 9 O O1 TAK . . . I 9 90.32 124.011 134.321 1 113.33 ? O1 TAK 601 A 1 HETATM 10 C C8 TAK . . . I 9 91.505 124.146 133.669 1 113.33 ? C8 TAK 601 A 1 HETATM 11 C C9 TAK . . . I 9 92.501 124.955 134.2 1 113.33 ? C9 TAK 601 A 1 HETATM 12 C C10 TAK . . . I 9 93.704 125.091 133.537 1 113.33 ? C10 TAK 601 A 1 HETATM 13 C C11 TAK . . . I 9 91.711 123.472 132.472 1 113.33 ? C11 TAK 601 A 1 HETATM 14 C C12 TAK . . . I 9 92.911 123.604 131.804 1 113.33 ? C12 TAK 601 A 1 HETATM 15 C C13 TAK . . . I 9 93.914 124.416 132.335 1 113.33 ? C13 TAK 601 A 1 HETATM 16 C C14 TAK . . . I 9 95.206 124.562 131.622 1 113.33 ? C14 TAK 601 A 1 HETATM 17 C C15 TAK . . . I 9 96.288 125.091 132.264 1 113.33 ? C15 TAK 601 A 1 HETATM 18 C C16 TAK . . . I 9 95.335 124.161 130.276 1 113.33 ? C16 TAK 601 A 1 HETATM 19 N N2 TAK . . . I 9 96.484 124.296 129.656 1 113.33 ? N2 TAK 601 A 1 HETATM 20 C C17 TAK . . . I 9 97.548 124.812 130.28 1 113.33 ? C17 TAK 601 A 1 HETATM 21 N N3 TAK . . . I 9 97.465 125.215 131.587 1 113.33 ? N3 TAK 601 A 1 HETATM 22 N N4 TAK . . . I 9 98.717 125.706 131.97 1 113.33 ? N4 TAK 601 A 1 HETATM 23 C C18 TAK . . . I 9 99.54 125.62 130.955 1 113.33 ? C18 TAK 601 A 1 HETATM 24 C C19 TAK . . . I 9 98.866 125.055 129.868 1 113.33 ? C19 TAK 601 A 1 HETATM 25 C C20 TAK . . . I 9 99.439 124.801 128.528 1 113.33 ? C20 TAK 601 A 1 HETATM 26 C C21 TAK . . . I 9 100.695 124.194 128.388 1 113.33 ? C21 TAK 601 A 1 HETATM 27 C C22 TAK . . . I 9 101.19 123.983 127.116 1 113.33 ? C22 TAK 601 A 1 HETATM 28 N N5 TAK . . . I 9 100.495 124.35 126.053 1 113.33 ? N5 TAK 601 A 1 HETATM 29 C C23 TAK . . . I 9 99.309 124.93 126.141 1 113.33 ? C23 TAK 601 A 1 HETATM 30 C C24 TAK . . . I 9 98.74 125.177 127.373 1 113.33 ? C24 TAK 601 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #