data_7JHP # _model_server_result.job_id i1ulmtpcbsD1cGm41ipT8A _model_server_result.datetime_utc '2024-12-21 12:43:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jhp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7JHP # _exptl.entry_id 7JHP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.945 _cell.angle_gamma 90 _cell.entry_id 7JHP _cell.length_a 94.487 _cell.length_b 44.353 _cell.length_c 74.395 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JHP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc3 C O2G GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc4 C O2B GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc5 D MG MG . A MG 202 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc6 D MG MG . A MG 202 1_555 G O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc7 B ND1 HIS 85 C HIS 139 1_555 F ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc8 B SG CYS 98 C CYS 152 1_555 E ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc9 B SG CYS 101 C CYS 155 1_555 E ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc10 B SG CYS 111 C CYS 165 1_555 F ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc11 B ND1 HIS 119 C HIS 173 1_555 E ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc12 B SG CYS 122 C CYS 176 1_555 E ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc13 B SG CYS 130 C CYS 184 1_555 F ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 7JHP _atom_sites.fract_transf_matrix[1][1] 0.010583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002628 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GNP A 1 201 528 GNP GNP . D 4 MG A 1 202 168 MG MG . E 5 ZN C 1 201 1 ZN ZN . F 5 ZN C 1 202 2 ZN ZN . G 6 HOH A 1 301 2 HOH HOH . G 6 HOH A 2 302 37 HOH HOH . G 6 HOH A 3 303 24 HOH HOH . G 6 HOH A 4 304 17 HOH HOH . G 6 HOH A 5 305 1 HOH HOH . G 6 HOH A 6 306 16 HOH HOH . G 6 HOH A 7 307 4 HOH HOH . G 6 HOH A 8 308 41 HOH HOH . G 6 HOH A 9 309 48 HOH HOH . G 6 HOH A 10 310 11 HOH HOH . G 6 HOH A 11 311 5 HOH HOH . G 6 HOH A 12 312 13 HOH HOH . G 6 HOH A 13 313 8 HOH HOH . G 6 HOH A 14 314 10 HOH HOH . G 6 HOH A 15 315 32 HOH HOH . G 6 HOH A 16 316 36 HOH HOH . G 6 HOH A 17 317 6 HOH HOH . G 6 HOH A 18 318 12 HOH HOH . G 6 HOH A 19 319 22 HOH HOH . G 6 HOH A 20 320 45 HOH HOH . G 6 HOH A 21 321 43 HOH HOH . G 6 HOH A 22 322 27 HOH HOH . G 6 HOH A 23 323 34 HOH HOH . G 6 HOH A 24 324 23 HOH HOH . G 6 HOH A 25 325 38 HOH HOH . G 6 HOH A 26 326 9 HOH HOH . G 6 HOH A 27 327 25 HOH HOH . G 6 HOH A 28 328 30 HOH HOH . G 6 HOH A 29 329 29 HOH HOH . G 6 HOH A 30 330 31 HOH HOH . G 6 HOH A 31 331 21 HOH HOH . G 6 HOH A 32 332 18 HOH HOH . H 6 HOH C 1 301 40 HOH HOH . H 6 HOH C 2 302 19 HOH HOH . H 6 HOH C 3 303 42 HOH HOH . H 6 HOH C 4 304 20 HOH HOH . H 6 HOH C 5 305 14 HOH HOH . H 6 HOH C 6 306 7 HOH HOH . H 6 HOH C 7 307 35 HOH HOH . H 6 HOH C 8 308 15 HOH HOH . H 6 HOH C 9 309 28 HOH HOH . H 6 HOH C 10 310 49 HOH HOH . H 6 HOH C 11 311 33 HOH HOH . H 6 HOH C 12 312 47 HOH HOH . H 6 HOH C 13 313 26 HOH HOH . H 6 HOH C 14 314 39 HOH HOH . H 6 HOH C 15 315 44 HOH HOH . H 6 HOH C 16 316 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 3 17.368 9.715 26.491 1 42.88 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . C 3 15.899 9.894 26.748 1 60.15 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . C 3 17.682 10.152 25.061 1 38.56 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . C 3 17.74 8.218 26.67 1 46.15 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . C 3 18.281 10.656 27.59 1 35.67 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . C 3 19.921 10.696 27.494 1 31.09 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . C 3 20.506 9.375 27.933 1 26.17 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . C 3 20.34 10.99 26.08 1 20.17 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . C 3 20.489 11.884 28.473 1 37.12 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . C 3 20.697 13.383 27.984 1 35.51 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . C 3 22.019 13.43 27.22 1 29.27 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . C 3 19.533 13.886 27.227 1 40.89 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . C 3 20.837 14.165 29.342 1 42.28 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . C 3 19.801 14.119 30.346 1 41.13 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . C 3 20.001 15.263 31.311 1 40.71 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . C 3 21.182 15.025 32.112 1 41.87 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . C 3 20.19 16.638 30.671 1 41.33 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . C 3 19.558 17.656 31.439 1 47.12 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . C 3 21.713 16.794 30.648 1 36.45 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . C 3 22.114 18.156 30.698 1 36.7 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . C 3 22.106 16.084 31.942 1 40.48 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . C 3 23.462 15.516 31.901 1 43.05 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . C 3 23.966 14.645 30.969 1 44.84 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . C 3 25.216 14.312 31.195 1 48.6 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . C 3 25.553 15.008 32.344 1 44.72 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . C 3 26.786 15.062 33.094 1 39.55 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . C 3 27.836 14.469 32.851 1 36.78 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . C 3 26.685 15.893 34.191 1 40.8 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . C 3 25.566 16.596 34.549 1 41.31 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . C 3 25.654 17.354 35.644 1 39.08 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . C 3 24.423 16.557 33.866 1 43.85 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . C 3 24.484 15.753 32.788 1 44.36 ? C4 GNP 201 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #