data_7JIB # _model_server_result.job_id Hw3XtCbYDXqbc4RbMwvOLg _model_server_result.datetime_utc '2024-11-01 05:29:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jib # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":7107}' # _entry.id 7JIB # _exptl.entry_id 7JIB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.215 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JIB _cell.length_a 170.83 _cell.length_b 170.83 _cell.length_c 52.738 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 77 B CYS 74 1_555 J ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 B SG CYS 80 B CYS 77 1_555 J ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 B NE2 HIS 86 B HIS 83 1_555 J ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc4 B SG CYS 93 B CYS 90 1_555 J ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc5 B SG CYS 120 B CYS 117 1_555 K ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc6 B SG CYS 123 B CYS 120 1_555 K ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc7 B SG CYS 131 B CYS 128 1_555 K ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc8 B SG CYS 133 B CYS 130 1_555 K ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? # _chem_comp.formula 'C11 H19 N5 O14 P3 1' _chem_comp.formula_weight 538.215 _chem_comp.id MGP _chem_comp.mon_nstd_flag . _chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A MGP sing 323 n n PA O2A MGP doub 324 n n PA O3A MGP sing 325 n n PA O5' MGP sing 326 n n O3A PB MGP sing 327 n n O5' C5' MGP sing 328 n n PB O1B MGP sing 329 n n PB O2B MGP doub 330 n n PB O3B MGP sing 331 n n O3B PC MGP sing 332 n n PC O1C MGP sing 333 n n PC O2C MGP doub 334 n n PC O3C MGP sing 335 n n C5' C4' MGP sing 336 n n C5' H5' MGP sing 337 n n C5' "H5'A" MGP sing 338 n n C4' O4' MGP sing 339 n n C4' C3' MGP sing 340 n n C4' H4' MGP sing 341 n n O4' C1' MGP sing 342 n n C3' O3' MGP sing 343 n n C3' C2' MGP sing 344 n n C3' H3' MGP sing 345 n n O3' HO3' MGP sing 346 n n C2' O2' MGP sing 347 n n C2' C1' MGP sing 348 n n C2' H2' MGP sing 349 n n O2' HO2' MGP sing 350 n n C1' N9 MGP sing 351 n n C1' H1' MGP sing 352 n n N9 C8 MGP sing 353 n y N9 C4 MGP sing 354 n y C8 N7 MGP doub 355 n y C8 H8 MGP sing 356 n n N7 CM7 MGP sing 357 n n N7 C5 MGP sing 358 n y CM7 HM7 MGP sing 359 n n CM7 HM7A MGP sing 360 n n CM7 HM7B MGP sing 361 n n C5 C6 MGP sing 362 n n C5 C4 MGP doub 363 n y C6 O6 MGP doub 364 n n C6 N1 MGP sing 365 n n N1 C2 MGP sing 366 n n N1 HN1 MGP sing 367 n n C2 N2 MGP sing 368 n n C2 N3 MGP doub 369 n n N2 HN2 MGP sing 370 n n N2 HN2A MGP sing 371 n n N3 C4 MGP sing 372 n n O1A H16 MGP sing 373 n n O1B H17 MGP sing 374 n n O1C H18 MGP sing 375 n n O3C H19 MGP sing 376 n n # _atom_sites.entry_id 7JIB _atom_sites.fract_transf_matrix[1][1] 0.005854 _atom_sites.fract_transf_matrix[1][2] 0.00338 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 7101 3 CL CL . D 3 CL A 1 7102 4 CL CL . E 4 SAM A 1 7103 5 SAM SAM . F 5 SAH A 1 7104 6 SAH SAH . G 6 GTA A 1 7105 7 GTA GTA . H 7 V9G A 1 7106 8 V9G V9G . I 8 MGP A 1 7107 9 MGP MGP . J 9 ZN B 1 4401 1 ZN ZN . K 9 ZN B 1 4402 2 ZN ZN . L 10 HOH A 1 7201 87 HOH HOH . L 10 HOH A 2 7202 71 HOH HOH . L 10 HOH A 3 7203 90 HOH HOH . L 10 HOH A 4 7204 104 HOH HOH . L 10 HOH A 5 7205 114 HOH HOH . L 10 HOH A 6 7206 66 HOH HOH . L 10 HOH A 7 7207 92 HOH HOH . L 10 HOH A 8 7208 48 HOH HOH . L 10 HOH A 9 7209 63 HOH HOH . L 10 HOH A 10 7210 100 HOH HOH . L 10 HOH A 11 7211 61 HOH HOH . L 10 HOH A 12 7212 112 HOH HOH . L 10 HOH A 13 7213 60 HOH HOH . L 10 HOH A 14 7214 46 HOH HOH . L 10 HOH A 15 7215 146 HOH HOH . L 10 HOH A 16 7216 29 HOH HOH . L 10 HOH A 17 7217 78 HOH HOH . L 10 HOH A 18 7218 32 HOH HOH . L 10 HOH A 19 7219 110 HOH HOH . L 10 HOH A 20 7220 83 HOH HOH . L 10 HOH A 21 7221 89 HOH HOH . L 10 HOH A 22 7222 69 HOH HOH . L 10 HOH A 23 7223 93 HOH HOH . L 10 HOH A 24 7224 82 HOH HOH . L 10 HOH A 25 7225 22 HOH HOH . L 10 HOH A 26 7226 127 HOH HOH . L 10 HOH A 27 7227 38 HOH HOH . L 10 HOH A 28 7228 11 HOH HOH . L 10 HOH A 29 7229 126 HOH HOH . L 10 HOH A 30 7230 27 HOH HOH . L 10 HOH A 31 7231 43 HOH HOH . L 10 HOH A 32 7232 141 HOH HOH . L 10 HOH A 33 7233 58 HOH HOH . L 10 HOH A 34 7234 24 HOH HOH . L 10 HOH A 35 7235 39 HOH HOH . L 10 HOH A 36 7236 85 HOH HOH . L 10 HOH A 37 7237 10 HOH HOH . L 10 HOH A 38 7238 23 HOH HOH . L 10 HOH A 39 7239 103 HOH HOH . L 10 HOH A 40 7240 145 HOH HOH . L 10 HOH A 41 7241 18 HOH HOH . L 10 HOH A 42 7242 62 HOH HOH . L 10 HOH A 43 7243 99 HOH HOH . L 10 HOH A 44 7244 119 HOH HOH . L 10 HOH A 45 7245 19 HOH HOH . L 10 HOH A 46 7246 31 HOH HOH . L 10 HOH A 47 7247 36 HOH HOH . L 10 HOH A 48 7248 55 HOH HOH . L 10 HOH A 49 7249 151 HOH HOH . L 10 HOH A 50 7250 13 HOH HOH . L 10 HOH A 51 7251 121 HOH HOH . L 10 HOH A 52 7252 117 HOH HOH . L 10 HOH A 53 7253 130 HOH HOH . L 10 HOH A 54 7254 139 HOH HOH . L 10 HOH A 55 7255 35 HOH HOH . L 10 HOH A 56 7256 21 HOH HOH . L 10 HOH A 57 7257 96 HOH HOH . L 10 HOH A 58 7258 25 HOH HOH . L 10 HOH A 59 7259 107 HOH HOH . L 10 HOH A 60 7260 45 HOH HOH . L 10 HOH A 61 7261 14 HOH HOH . L 10 HOH A 62 7262 95 HOH HOH . L 10 HOH A 63 7263 150 HOH HOH . L 10 HOH A 64 7264 101 HOH HOH . L 10 HOH A 65 7265 50 HOH HOH . L 10 HOH A 66 7266 79 HOH HOH . L 10 HOH A 67 7267 77 HOH HOH . L 10 HOH A 68 7268 49 HOH HOH . L 10 HOH A 69 7269 42 HOH HOH . L 10 HOH A 70 7270 132 HOH HOH . L 10 HOH A 71 7271 111 HOH HOH . L 10 HOH A 72 7272 15 HOH HOH . L 10 HOH A 73 7273 74 HOH HOH . L 10 HOH A 74 7274 72 HOH HOH . L 10 HOH A 75 7275 17 HOH HOH . L 10 HOH A 76 7276 138 HOH HOH . L 10 HOH A 77 7277 41 HOH HOH . L 10 HOH A 78 7278 149 HOH HOH . L 10 HOH A 79 7279 97 HOH HOH . L 10 HOH A 80 7280 54 HOH HOH . L 10 HOH A 81 7281 109 HOH HOH . L 10 HOH A 82 7282 12 HOH HOH . L 10 HOH A 83 7283 140 HOH HOH . L 10 HOH A 84 7284 84 HOH HOH . L 10 HOH A 85 7285 34 HOH HOH . L 10 HOH A 86 7286 133 HOH HOH . L 10 HOH A 87 7287 52 HOH HOH . L 10 HOH A 88 7288 88 HOH HOH . L 10 HOH A 89 7289 116 HOH HOH . L 10 HOH A 90 7290 86 HOH HOH . L 10 HOH A 91 7291 75 HOH HOH . L 10 HOH A 92 7292 57 HOH HOH . L 10 HOH A 93 7293 125 HOH HOH . L 10 HOH A 94 7294 128 HOH HOH . L 10 HOH A 95 7295 68 HOH HOH . L 10 HOH A 96 7296 53 HOH HOH . L 10 HOH A 97 7297 28 HOH HOH . L 10 HOH A 98 7298 102 HOH HOH . L 10 HOH A 99 7299 120 HOH HOH . L 10 HOH A 100 7300 137 HOH HOH . L 10 HOH A 101 7301 143 HOH HOH . L 10 HOH A 102 7302 98 HOH HOH . L 10 HOH A 103 7303 16 HOH HOH . L 10 HOH A 104 7304 142 HOH HOH . L 10 HOH A 105 7305 64 HOH HOH . L 10 HOH A 106 7306 70 HOH HOH . L 10 HOH A 107 7307 80 HOH HOH . L 10 HOH A 108 7308 20 HOH HOH . L 10 HOH A 109 7309 108 HOH HOH . L 10 HOH A 110 7310 105 HOH HOH . L 10 HOH A 111 7311 94 HOH HOH . L 10 HOH A 112 7312 122 HOH HOH . L 10 HOH A 113 7313 136 HOH HOH . L 10 HOH A 114 7314 106 HOH HOH . L 10 HOH A 115 7315 135 HOH HOH . L 10 HOH A 116 7316 118 HOH HOH . L 10 HOH A 117 7317 123 HOH HOH . L 10 HOH A 118 7318 56 HOH HOH . L 10 HOH A 119 7319 129 HOH HOH . L 10 HOH A 120 7320 51 HOH HOH . L 10 HOH A 121 7321 134 HOH HOH . L 10 HOH A 122 7322 131 HOH HOH . L 10 HOH A 123 7323 81 HOH HOH . L 10 HOH A 124 7324 124 HOH HOH . M 10 HOH B 1 4501 33 HOH HOH . M 10 HOH B 2 4502 91 HOH HOH . M 10 HOH B 3 4503 47 HOH HOH . M 10 HOH B 4 4504 30 HOH HOH . M 10 HOH B 5 4505 73 HOH HOH . M 10 HOH B 6 4506 40 HOH HOH . M 10 HOH B 7 4507 147 HOH HOH . M 10 HOH B 8 4508 37 HOH HOH . M 10 HOH B 9 4509 59 HOH HOH . M 10 HOH B 10 4510 67 HOH HOH . M 10 HOH B 11 4511 65 HOH HOH . M 10 HOH B 12 4512 148 HOH HOH . M 10 HOH B 13 4513 115 HOH HOH . M 10 HOH B 14 4514 44 HOH HOH . M 10 HOH B 15 4515 26 HOH HOH . M 10 HOH B 16 4516 144 HOH HOH . M 10 HOH B 17 4517 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA MGP . . . I 8 -70.526 40.376 -5.805 1 153.34 ? PA MGP 7107 A 1 HETATM 2 O O1A MGP . . . I 8 -69.989 40.245 -4.417 1 151.73 ? O1A MGP 7107 A 1 HETATM 3 O O2A MGP . . . I 8 -71.66 39.486 -6.195 1 145.46 ? O2A MGP 7107 A 1 HETATM 4 O O3A MGP . . . I 8 -70.957 41.902 -6.072 1 160.98 ? O3A MGP 7107 A 1 HETATM 5 O O5' MGP . . . I 8 -69.328 40.211 -6.863 1 133.49 ? O5' MGP 7107 A 1 HETATM 6 P PB MGP . . . I 8 -71.022 42.838 -7.373 1 159.67 ? PB MGP 7107 A 1 HETATM 7 O O1B MGP . . . I 8 -69.712 43.539 -7.525 1 150.33 ? O1B MGP 7107 A 1 HETATM 8 O O2B MGP . . . I 8 -72.282 43.639 -7.321 1 150.52 ? O2B MGP 7107 A 1 HETATM 9 O O3B MGP . . . I 8 -71.158 41.747 -8.539 1 172.72 ? O3B MGP 7107 A 1 HETATM 10 P PC MGP . . . I 8 -70.862 41.773 -10.129 1 183.06 ? PC MGP 7107 A 1 HETATM 11 O O1C MGP . . . I 8 -69.711 42.729 -10.325 1 186.47 ? O1C MGP 7107 A 1 HETATM 12 O O2C MGP . . . I 8 -72.136 42.255 -10.78 1 184.24 ? O2C MGP 7107 A 1 HETATM 13 O O3C MGP . . . I 8 -70.512 40.356 -10.516 1 173.84 ? O3C MGP 7107 A 1 HETATM 14 C C5' MGP . . . I 8 -67.963 40.547 -6.496 1 113.98 ? C5' MGP 7107 A 1 HETATM 15 C C4' MGP . . . I 8 -67.013 39.657 -7.258 1 105.25 ? C4' MGP 7107 A 1 HETATM 16 O O4' MGP . . . I 8 -67.38 38.272 -7.026 1 100.9 ? O4' MGP 7107 A 1 HETATM 17 C C3' MGP . . . I 8 -67.033 39.797 -8.786 1 99.16 ? C3' MGP 7107 A 1 HETATM 18 O O3' MGP . . . I 8 -66.245 40.897 -9.224 1 107.75 ? O3' MGP 7107 A 1 HETATM 19 C C2' MGP . . . I 8 -66.518 38.438 -9.219 1 94.29 ? C2' MGP 7107 A 1 HETATM 20 O O2' MGP . . . I 8 -65.123 38.278 -9.054 1 89.33 ? O2' MGP 7107 A 1 HETATM 21 C C1' MGP . . . I 8 -67.193 37.523 -8.21 1 91.4 ? C1' MGP 7107 A 1 HETATM 22 N N9 MGP . . . I 8 -68.478 36.974 -8.685 1 79.96 ? N9 MGP 7107 A 1 HETATM 23 C C8 MGP . . . I 8 -69.69 37.42 -8.361 1 73.39 ? C8 MGP 7107 A 1 HETATM 24 N N7 MGP . . . I 8 -70.618 36.7 -8.983 1 68.5 ? N7 MGP 7107 A 1 HETATM 25 C CM7 MGP . . . I 8 -72.061 36.916 -8.877 1 66.92 ? CM7 MGP 7107 A 1 HETATM 26 C C5 MGP . . . I 8 -69.971 35.719 -9.729 1 66.97 ? C5 MGP 7107 A 1 HETATM 27 C C6 MGP . . . I 8 -70.455 34.7 -10.544 1 64.66 ? C6 MGP 7107 A 1 HETATM 28 O O6 MGP . . . I 8 -71.618 34.421 -10.808 1 60.69 ? O6 MGP 7107 A 1 HETATM 29 N N1 MGP . . . I 8 -69.417 33.967 -11.077 1 67.54 ? N1 MGP 7107 A 1 HETATM 30 C C2 MGP . . . I 8 -68.083 34.187 -10.856 1 66.87 ? C2 MGP 7107 A 1 HETATM 31 N N2 MGP . . . I 8 -67.223 33.364 -11.465 1 65.16 ? N2 MGP 7107 A 1 HETATM 32 N N3 MGP . . . I 8 -67.637 35.156 -10.081 1 67.84 ? N3 MGP 7107 A 1 HETATM 33 C C4 MGP . . . I 8 -68.623 35.899 -9.537 1 71.28 ? C4 MGP 7107 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #