data_7JIF # _model_server_result.job_id 0nr17vFrM4oq3BZEZZUECQ _model_server_result.datetime_utc '2025-07-30 16:31:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7JIF # _exptl.entry_id 7JIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JIF _cell.length_a 39.567 _cell.length_b 39.567 _cell.length_c 158.302 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 B O2G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc4 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc5 C MG MG . A MG 202 1_555 E O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc6 C MG MG . A MG 202 1_555 E O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 7JIF _atom_sites.fract_transf_matrix[1][1] 0.025274 _atom_sites.fract_transf_matrix[1][2] 0.014592 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006317 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 528 GNP GNP . C 3 MG A 1 202 168 MG MG . D 4 GOL A 1 203 1 GOL GOL . E 5 HOH A 1 301 81 HOH HOH . E 5 HOH A 2 302 129 HOH HOH . E 5 HOH A 3 303 149 HOH HOH . E 5 HOH A 4 304 57 HOH HOH . E 5 HOH A 5 305 126 HOH HOH . E 5 HOH A 6 306 128 HOH HOH . E 5 HOH A 7 307 12 HOH HOH . E 5 HOH A 8 308 145 HOH HOH . E 5 HOH A 9 309 40 HOH HOH . E 5 HOH A 10 310 136 HOH HOH . E 5 HOH A 11 311 71 HOH HOH . E 5 HOH A 12 312 85 HOH HOH . E 5 HOH A 13 313 19 HOH HOH . E 5 HOH A 14 314 153 HOH HOH . E 5 HOH A 15 315 1 HOH HOH . E 5 HOH A 16 316 27 HOH HOH . E 5 HOH A 17 317 17 HOH HOH . E 5 HOH A 18 318 120 HOH HOH . E 5 HOH A 19 319 56 HOH HOH . E 5 HOH A 20 320 101 HOH HOH . E 5 HOH A 21 321 113 HOH HOH . E 5 HOH A 22 322 47 HOH HOH . E 5 HOH A 23 323 11 HOH HOH . E 5 HOH A 24 324 44 HOH HOH . E 5 HOH A 25 325 35 HOH HOH . E 5 HOH A 26 326 64 HOH HOH . E 5 HOH A 27 327 68 HOH HOH . E 5 HOH A 28 328 52 HOH HOH . E 5 HOH A 29 329 92 HOH HOH . E 5 HOH A 30 330 51 HOH HOH . E 5 HOH A 31 331 65 HOH HOH . E 5 HOH A 32 332 33 HOH HOH . E 5 HOH A 33 333 69 HOH HOH . E 5 HOH A 34 334 3 HOH HOH . E 5 HOH A 35 335 48 HOH HOH . E 5 HOH A 36 336 67 HOH HOH . E 5 HOH A 37 337 79 HOH HOH . E 5 HOH A 38 338 122 HOH HOH . E 5 HOH A 39 339 16 HOH HOH . E 5 HOH A 40 340 58 HOH HOH . E 5 HOH A 41 341 45 HOH HOH . E 5 HOH A 42 342 50 HOH HOH . E 5 HOH A 43 343 39 HOH HOH . E 5 HOH A 44 344 32 HOH HOH . E 5 HOH A 45 345 4 HOH HOH . E 5 HOH A 46 346 22 HOH HOH . E 5 HOH A 47 347 55 HOH HOH . E 5 HOH A 48 348 102 HOH HOH . E 5 HOH A 49 349 34 HOH HOH . E 5 HOH A 50 350 116 HOH HOH . E 5 HOH A 51 351 2 HOH HOH . E 5 HOH A 52 352 61 HOH HOH . E 5 HOH A 53 353 135 HOH HOH . E 5 HOH A 54 354 14 HOH HOH . E 5 HOH A 55 355 13 HOH HOH . E 5 HOH A 56 356 114 HOH HOH . E 5 HOH A 57 357 91 HOH HOH . E 5 HOH A 58 358 62 HOH HOH . E 5 HOH A 59 359 21 HOH HOH . E 5 HOH A 60 360 59 HOH HOH . E 5 HOH A 61 361 6 HOH HOH . E 5 HOH A 62 362 5 HOH HOH . E 5 HOH A 63 363 125 HOH HOH . E 5 HOH A 64 364 29 HOH HOH . E 5 HOH A 65 365 103 HOH HOH . E 5 HOH A 66 366 152 HOH HOH . E 5 HOH A 67 367 124 HOH HOH . E 5 HOH A 68 368 42 HOH HOH . E 5 HOH A 69 369 84 HOH HOH . E 5 HOH A 70 370 54 HOH HOH . E 5 HOH A 71 371 77 HOH HOH . E 5 HOH A 72 372 130 HOH HOH . E 5 HOH A 73 373 26 HOH HOH . E 5 HOH A 74 374 142 HOH HOH . E 5 HOH A 75 375 78 HOH HOH . E 5 HOH A 76 376 115 HOH HOH . E 5 HOH A 77 377 66 HOH HOH . E 5 HOH A 78 378 143 HOH HOH . E 5 HOH A 79 379 24 HOH HOH . E 5 HOH A 80 380 156 HOH HOH . E 5 HOH A 81 381 155 HOH HOH . E 5 HOH A 82 382 141 HOH HOH . E 5 HOH A 83 383 104 HOH HOH . E 5 HOH A 84 384 70 HOH HOH . E 5 HOH A 85 385 73 HOH HOH . E 5 HOH A 86 386 30 HOH HOH . E 5 HOH A 87 387 76 HOH HOH . E 5 HOH A 88 388 8 HOH HOH . E 5 HOH A 89 389 99 HOH HOH . E 5 HOH A 90 390 108 HOH HOH . E 5 HOH A 91 391 112 HOH HOH . E 5 HOH A 92 392 18 HOH HOH . E 5 HOH A 93 393 148 HOH HOH . E 5 HOH A 94 394 132 HOH HOH . E 5 HOH A 95 395 86 HOH HOH . E 5 HOH A 96 396 25 HOH HOH . E 5 HOH A 97 397 9 HOH HOH . E 5 HOH A 98 398 82 HOH HOH . E 5 HOH A 99 399 7 HOH HOH . E 5 HOH A 100 400 63 HOH HOH . E 5 HOH A 101 401 89 HOH HOH . E 5 HOH A 102 402 75 HOH HOH . E 5 HOH A 103 403 15 HOH HOH . E 5 HOH A 104 404 133 HOH HOH . E 5 HOH A 105 405 23 HOH HOH . E 5 HOH A 106 406 110 HOH HOH . E 5 HOH A 107 407 60 HOH HOH . E 5 HOH A 108 408 151 HOH HOH . E 5 HOH A 109 409 146 HOH HOH . E 5 HOH A 110 410 95 HOH HOH . E 5 HOH A 111 411 20 HOH HOH . E 5 HOH A 112 412 118 HOH HOH . E 5 HOH A 113 413 144 HOH HOH . E 5 HOH A 114 414 31 HOH HOH . E 5 HOH A 115 415 94 HOH HOH . E 5 HOH A 116 416 74 HOH HOH . E 5 HOH A 117 417 90 HOH HOH . E 5 HOH A 118 418 137 HOH HOH . E 5 HOH A 119 419 93 HOH HOH . E 5 HOH A 120 420 127 HOH HOH . E 5 HOH A 121 421 154 HOH HOH . E 5 HOH A 122 422 158 HOH HOH . E 5 HOH A 123 423 147 HOH HOH . E 5 HOH A 124 424 87 HOH HOH . E 5 HOH A 125 425 46 HOH HOH . E 5 HOH A 126 426 150 HOH HOH . E 5 HOH A 127 427 37 HOH HOH . E 5 HOH A 128 428 10 HOH HOH . E 5 HOH A 129 429 43 HOH HOH . E 5 HOH A 130 430 138 HOH HOH . E 5 HOH A 131 431 157 HOH HOH . E 5 HOH A 132 432 109 HOH HOH . E 5 HOH A 133 433 140 HOH HOH . E 5 HOH A 134 434 28 HOH HOH . E 5 HOH A 135 435 98 HOH HOH . E 5 HOH A 136 436 96 HOH HOH . E 5 HOH A 137 437 49 HOH HOH . E 5 HOH A 138 438 53 HOH HOH . E 5 HOH A 139 439 41 HOH HOH . E 5 HOH A 140 440 106 HOH HOH . E 5 HOH A 141 441 119 HOH HOH . E 5 HOH A 142 442 100 HOH HOH . E 5 HOH A 143 443 105 HOH HOH . E 5 HOH A 144 444 123 HOH HOH . E 5 HOH A 145 445 38 HOH HOH . E 5 HOH A 146 446 88 HOH HOH . E 5 HOH A 147 447 97 HOH HOH . E 5 HOH A 148 448 107 HOH HOH . E 5 HOH A 149 449 139 HOH HOH . E 5 HOH A 150 450 80 HOH HOH . E 5 HOH A 151 451 72 HOH HOH . E 5 HOH A 152 452 121 HOH HOH . E 5 HOH A 153 453 36 HOH HOH . E 5 HOH A 154 454 111 HOH HOH . E 5 HOH A 155 455 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 -5.101 -14.734 -4.729 1 20.13 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . B 2 -5.635 -14.681 -3.308 1 19.08 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . B 2 -6.227 -14.968 -5.706 1 19.63 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . B 2 -4.043 -15.808 -4.723 1 16.65 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . B 2 -4.369 -13.342 -5.083 1 15.2 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . B 2 -3.836 -12.822 -6.514 1 17.61 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . B 2 -2.487 -13.387 -6.754 1 15.1 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . B 2 -4.874 -13.106 -7.528 1 16.87 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . B 2 -3.633 -11.295 -6.422 1 15.11 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . B 2 -4.496 -10.109 -6.942 1 16.73 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . B 2 -4.504 -10.024 -8.424 1 13.17 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . B 2 -5.817 -10.112 -6.276 1 15.87 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . B 2 -3.707 -8.817 -6.452 1 16.01 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . B 2 -3.333 -8.594 -5.094 1 15.33 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . B 2 -3.194 -7.103 -4.805 1 16.35 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . B 2 -2.052 -6.581 -5.526 1 18.92 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . B 2 -4.371 -6.234 -5.25 1 20.26 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . B 2 -4.548 -5.09 -4.396 1 19.68 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . B 2 -3.939 -5.805 -6.648 1 18.34 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . B 2 -4.586 -4.622 -7.071 1 23.51 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . B 2 -2.45 -5.567 -6.429 1 19.13 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . B 2 -1.67 -5.742 -7.651 1 19.05 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . B 2 -1.751 -6.807 -8.53 1 18.2 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . B 2 -0.939 -6.723 -9.55 1 16.84 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . B 2 -0.273 -5.523 -9.343 1 16.37 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . B 2 0.728 -4.888 -10.117 1 16.47 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . B 2 1.239 -5.258 -11.179 1 20.25 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . B 2 1.12 -3.677 -9.561 1 18.95 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . B 2 0.621 -3.151 -8.392 1 20.07 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . B 2 1.127 -1.966 -8.009 1 24.31 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . B 2 -0.315 -3.736 -7.657 1 22.4 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . B 2 -0.72 -4.908 -8.186 1 20.04 ? C4 GNP 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #