data_7JIG # _model_server_result.job_id UYQhVhAzc009YFjlGziYYg _model_server_result.datetime_utc '2024-12-23 06:25:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jig # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7JIG # _exptl.entry_id 7JIG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JIG _cell.length_a 38.964 _cell.length_b 38.964 _cell.length_c 159.048 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JIG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc3 B O2G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc4 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc5 C MG MG . A MG 202 1_555 D O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc6 C MG MG . A MG 202 1_555 D O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 7JIG _atom_sites.fract_transf_matrix[1][1] 0.025665 _atom_sites.fract_transf_matrix[1][2] 0.014818 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 528 GNP GNP . C 3 MG A 1 202 168 MG MG . D 4 HOH A 1 301 24 HOH HOH . D 4 HOH A 2 302 30 HOH HOH . D 4 HOH A 3 303 2 HOH HOH . D 4 HOH A 4 304 7 HOH HOH . D 4 HOH A 5 305 42 HOH HOH . D 4 HOH A 6 306 14 HOH HOH . D 4 HOH A 7 307 44 HOH HOH . D 4 HOH A 8 308 23 HOH HOH . D 4 HOH A 9 309 8 HOH HOH . D 4 HOH A 10 310 12 HOH HOH . D 4 HOH A 11 311 3 HOH HOH . D 4 HOH A 12 312 65 HOH HOH . D 4 HOH A 13 313 29 HOH HOH . D 4 HOH A 14 314 41 HOH HOH . D 4 HOH A 15 315 52 HOH HOH . D 4 HOH A 16 316 67 HOH HOH . D 4 HOH A 17 317 4 HOH HOH . D 4 HOH A 18 318 1 HOH HOH . D 4 HOH A 19 319 11 HOH HOH . D 4 HOH A 20 320 38 HOH HOH . D 4 HOH A 21 321 16 HOH HOH . D 4 HOH A 22 322 26 HOH HOH . D 4 HOH A 23 323 18 HOH HOH . D 4 HOH A 24 324 39 HOH HOH . D 4 HOH A 25 325 50 HOH HOH . D 4 HOH A 26 326 6 HOH HOH . D 4 HOH A 27 327 9 HOH HOH . D 4 HOH A 28 328 36 HOH HOH . D 4 HOH A 29 329 62 HOH HOH . D 4 HOH A 30 330 15 HOH HOH . D 4 HOH A 31 331 33 HOH HOH . D 4 HOH A 32 332 20 HOH HOH . D 4 HOH A 33 333 5 HOH HOH . D 4 HOH A 34 334 59 HOH HOH . D 4 HOH A 35 335 53 HOH HOH . D 4 HOH A 36 336 35 HOH HOH . D 4 HOH A 37 337 56 HOH HOH . D 4 HOH A 38 338 32 HOH HOH . D 4 HOH A 39 339 54 HOH HOH . D 4 HOH A 40 340 13 HOH HOH . D 4 HOH A 41 341 27 HOH HOH . D 4 HOH A 42 342 17 HOH HOH . D 4 HOH A 43 343 60 HOH HOH . D 4 HOH A 44 344 61 HOH HOH . D 4 HOH A 45 345 25 HOH HOH . D 4 HOH A 46 346 64 HOH HOH . D 4 HOH A 47 347 34 HOH HOH . D 4 HOH A 48 348 57 HOH HOH . D 4 HOH A 49 349 66 HOH HOH . D 4 HOH A 50 350 22 HOH HOH . D 4 HOH A 51 351 47 HOH HOH . D 4 HOH A 52 352 31 HOH HOH . D 4 HOH A 53 353 19 HOH HOH . D 4 HOH A 54 354 46 HOH HOH . D 4 HOH A 55 355 51 HOH HOH . D 4 HOH A 56 356 63 HOH HOH . D 4 HOH A 57 357 37 HOH HOH . D 4 HOH A 58 358 49 HOH HOH . D 4 HOH A 59 359 10 HOH HOH . D 4 HOH A 60 360 58 HOH HOH . D 4 HOH A 61 361 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 -5.062 -14.726 -4.768 1 27.49 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . B 2 -5.449 -14.651 -3.312 1 28.03 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . B 2 -6.191 -15.074 -5.691 1 23.2 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . B 2 -3.882 -15.659 -4.742 1 24.14 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . B 2 -4.524 -13.285 -5.214 1 24.48 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . B 2 -3.929 -12.858 -6.631 1 26.32 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . B 2 -2.572 -13.426 -6.869 1 26.07 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . B 2 -4.922 -13.173 -7.683 1 20.12 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . B 2 -3.748 -11.333 -6.601 1 27.28 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . B 2 -4.777 -10.27 -7.021 1 26.31 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . B 2 -4.893 -10.176 -8.504 1 20.11 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . B 2 -6.011 -10.408 -6.225 1 20 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . B 2 -4.127 -8.918 -6.565 1 25.32 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . B 2 -3.709 -8.768 -5.198 1 25.98 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . B 2 -3.479 -7.299 -4.846 1 28.3 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . B 2 -2.275 -6.756 -5.483 1 26.06 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . B 2 -4.63 -6.39 -5.269 1 26.36 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . B 2 -4.769 -5.319 -4.358 1 31.98 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . B 2 -4.133 -5.887 -6.615 1 25.09 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . B 2 -4.79 -4.701 -7.009 1 30.19 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . B 2 -2.623 -5.707 -6.374 1 22.76 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . B 2 -1.901 -5.805 -7.648 1 24.83 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . B 2 -2.065 -6.8 -8.584 1 22.63 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . B 2 -1.345 -6.653 -9.657 1 21.03 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . B 2 -0.649 -5.472 -9.432 1 21.57 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . B 2 0.292 -4.805 -10.255 1 21.73 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . B 2 0.711 -5.117 -11.382 1 21.82 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . B 2 0.753 -3.638 -9.657 1 28.25 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . B 2 0.357 -3.171 -8.422 1 30.59 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . B 2 0.922 -2.016 -8.02 1 28.2 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . B 2 -0.522 -3.793 -7.638 1 26.06 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . B 2 -0.989 -4.933 -8.204 1 23.92 ? C4 GNP 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 1258 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 32 #