data_7JIH # _model_server_result.job_id jxSFI7yEyz8grLOipsrTqQ _model_server_result.datetime_utc '2025-08-31 02:37:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 7JIH # _exptl.entry_id 7JIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.81 _cell.angle_gamma 90 _cell.entry_id 7JIH _cell.length_a 55.675 _cell.length_b 49.832 _cell.length_c 57.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc2 C O2G GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc3 C O2B GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc4 D MG MG . A MG 202 1_555 I O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 D MG MG . A MG 202 1_555 I O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc6 D MG MG . A MG 202 1_555 I O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc7 B OG SER 17 B SER 17 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc8 F O2G GNP . B GNP 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc9 F O2B GNP . B GNP 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc10 G MG MG . B MG 202 1_555 J O HOH . B HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc11 G MG MG . B MG 202 1_555 J O HOH . B HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc12 G MG MG . B MG 202 1_555 J O HOH . B HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 7JIH _atom_sites.fract_transf_matrix[1][1] 0.017961 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009475 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GNP A 1 201 528 GNP GNP . D 3 MG A 1 202 529 MG MG . E 4 GOL A 1 203 53 GOL GOL . F 2 GNP B 1 201 528 GNP GNP . G 3 MG B 1 202 529 MG MG . H 4 GOL B 1 203 530 GOL GOL . I 5 HOH A 1 301 80 HOH HOH . I 5 HOH A 2 302 109 HOH HOH . I 5 HOH A 3 303 37 HOH HOH . I 5 HOH A 4 304 15 HOH HOH . I 5 HOH A 5 305 46 HOH HOH . I 5 HOH A 6 306 45 HOH HOH . I 5 HOH A 7 307 17 HOH HOH . I 5 HOH A 8 308 103 HOH HOH . I 5 HOH A 9 309 77 HOH HOH . I 5 HOH A 10 310 55 HOH HOH . I 5 HOH A 11 311 50 HOH HOH . I 5 HOH A 12 312 38 HOH HOH . I 5 HOH A 13 313 104 HOH HOH . I 5 HOH A 14 314 8 HOH HOH . I 5 HOH A 15 315 26 HOH HOH . I 5 HOH A 16 316 76 HOH HOH . I 5 HOH A 17 317 6 HOH HOH . I 5 HOH A 18 318 108 HOH HOH . I 5 HOH A 19 319 83 HOH HOH . I 5 HOH A 20 320 14 HOH HOH . I 5 HOH A 21 321 1 HOH HOH . I 5 HOH A 22 322 41 HOH HOH . I 5 HOH A 23 323 9 HOH HOH . I 5 HOH A 24 324 47 HOH HOH . I 5 HOH A 25 325 94 HOH HOH . I 5 HOH A 26 326 18 HOH HOH . I 5 HOH A 27 327 2 HOH HOH . I 5 HOH A 28 328 48 HOH HOH . I 5 HOH A 29 329 106 HOH HOH . I 5 HOH A 30 330 54 HOH HOH . I 5 HOH A 31 331 102 HOH HOH . I 5 HOH A 32 332 81 HOH HOH . I 5 HOH A 33 333 21 HOH HOH . I 5 HOH A 34 334 39 HOH HOH . I 5 HOH A 35 335 64 HOH HOH . I 5 HOH A 36 336 79 HOH HOH . I 5 HOH A 37 337 34 HOH HOH . I 5 HOH A 38 338 25 HOH HOH . I 5 HOH A 39 339 89 HOH HOH . I 5 HOH A 40 340 65 HOH HOH . I 5 HOH A 41 341 22 HOH HOH . I 5 HOH A 42 342 88 HOH HOH . I 5 HOH A 43 343 19 HOH HOH . I 5 HOH A 44 344 36 HOH HOH . I 5 HOH A 45 345 7 HOH HOH . I 5 HOH A 46 346 13 HOH HOH . I 5 HOH A 47 347 52 HOH HOH . I 5 HOH A 48 348 24 HOH HOH . I 5 HOH A 49 349 4 HOH HOH . I 5 HOH A 50 350 67 HOH HOH . I 5 HOH A 51 351 66 HOH HOH . I 5 HOH A 52 352 49 HOH HOH . I 5 HOH A 53 353 90 HOH HOH . I 5 HOH A 54 354 84 HOH HOH . I 5 HOH A 55 355 82 HOH HOH . J 5 HOH B 1 301 91 HOH HOH . J 5 HOH B 2 302 72 HOH HOH . J 5 HOH B 3 303 35 HOH HOH . J 5 HOH B 4 304 29 HOH HOH . J 5 HOH B 5 305 75 HOH HOH . J 5 HOH B 6 306 62 HOH HOH . J 5 HOH B 7 307 16 HOH HOH . J 5 HOH B 8 308 28 HOH HOH . J 5 HOH B 9 309 31 HOH HOH . J 5 HOH B 10 310 57 HOH HOH . J 5 HOH B 11 311 85 HOH HOH . J 5 HOH B 12 312 60 HOH HOH . J 5 HOH B 13 313 56 HOH HOH . J 5 HOH B 14 314 27 HOH HOH . J 5 HOH B 15 315 5 HOH HOH . J 5 HOH B 16 316 92 HOH HOH . J 5 HOH B 17 317 59 HOH HOH . J 5 HOH B 18 318 11 HOH HOH . J 5 HOH B 19 319 74 HOH HOH . J 5 HOH B 20 320 73 HOH HOH . J 5 HOH B 21 321 32 HOH HOH . J 5 HOH B 22 322 23 HOH HOH . J 5 HOH B 23 323 87 HOH HOH . J 5 HOH B 24 324 12 HOH HOH . J 5 HOH B 25 325 58 HOH HOH . J 5 HOH B 26 326 44 HOH HOH . J 5 HOH B 27 327 33 HOH HOH . J 5 HOH B 28 328 30 HOH HOH . J 5 HOH B 29 329 101 HOH HOH . J 5 HOH B 30 330 10 HOH HOH . J 5 HOH B 31 331 42 HOH HOH . J 5 HOH B 32 332 40 HOH HOH . J 5 HOH B 33 333 20 HOH HOH . J 5 HOH B 34 334 110 HOH HOH . J 5 HOH B 35 335 93 HOH HOH . J 5 HOH B 36 336 63 HOH HOH . J 5 HOH B 37 337 69 HOH HOH . J 5 HOH B 38 338 97 HOH HOH . J 5 HOH B 39 339 86 HOH HOH . J 5 HOH B 40 340 3 HOH HOH . J 5 HOH B 41 341 99 HOH HOH . J 5 HOH B 42 342 70 HOH HOH . J 5 HOH B 43 343 112 HOH HOH . J 5 HOH B 44 344 95 HOH HOH . J 5 HOH B 45 345 43 HOH HOH . J 5 HOH B 46 346 98 HOH HOH . J 5 HOH B 47 347 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . F 2 80.141 -37.772 -120.083 1 34.91 ? PG GNP 201 B 1 HETATM 2 O O1G GNP . . . F 2 81.163 -37.083 -120.983 1 44.69 ? O1G GNP 201 B 1 HETATM 3 O O2G GNP . . . F 2 80.25 -39.277 -120.106 1 37.77 ? O2G GNP 201 B 1 HETATM 4 O O3G GNP . . . F 2 78.811 -37.266 -120.595 1 36.27 ? O3G GNP 201 B 1 HETATM 5 N N3B GNP . . . F 2 80.297 -37.373 -118.528 1 34.46 ? N3B GNP 201 B 1 HETATM 6 P PB GNP . . . F 2 79.431 -37.927 -117.277 1 29.14 ? PB GNP 201 B 1 HETATM 7 O O1B GNP . . . F 2 78.168 -37.178 -117.186 1 26.32 ? O1B GNP 201 B 1 HETATM 8 O O2B GNP . . . F 2 79.305 -39.395 -117.437 1 31.16 ? O2B GNP 201 B 1 HETATM 9 O O3A GNP . . . F 2 80.186 -37.625 -115.975 1 25.02 ? O3A GNP 201 B 1 HETATM 10 P PA GNP . . . F 2 81.149 -38.517 -115.168 1 31.37 ? PA GNP 201 B 1 HETATM 11 O O1A GNP . . . F 2 80.41 -39.561 -114.424 1 28.53 ? O1A GNP 201 B 1 HETATM 12 O O2A GNP . . . F 2 82.266 -39.012 -116.009 1 38.67 ? O2A GNP 201 B 1 HETATM 13 O O5' GNP . . . F 2 81.785 -37.571 -114.071 1 28.61 ? O5' GNP 201 B 1 HETATM 14 C C5' GNP . . . F 2 82.391 -36.32 -114.433 1 30.67 ? C5' GNP 201 B 1 HETATM 15 C C4' GNP . . . F 2 83.353 -35.764 -113.391 1 26.21 ? C4' GNP 201 B 1 HETATM 16 O O4' GNP . . . F 2 82.609 -35.299 -112.244 1 29.13 ? O4' GNP 201 B 1 HETATM 17 C C3' GNP . . . F 2 84.391 -36.735 -112.831 1 29.18 ? C3' GNP 201 B 1 HETATM 18 O O3' GNP . . . F 2 85.578 -36.047 -112.498 1 28.33 ? O3' GNP 201 B 1 HETATM 19 C C2' GNP . . . F 2 83.734 -37.251 -111.561 1 26.01 ? C2' GNP 201 B 1 HETATM 20 O O2' GNP . . . F 2 84.678 -37.558 -110.575 1 26.59 ? O2' GNP 201 B 1 HETATM 21 C C1' GNP . . . F 2 82.991 -36.025 -111.089 1 25.06 ? C1' GNP 201 B 1 HETATM 22 N N9 GNP . . . F 2 81.77 -36.314 -110.348 1 24.12 ? N9 GNP 201 B 1 HETATM 23 C C8 GNP . . . F 2 80.684 -37.053 -110.767 1 26.51 ? C8 GNP 201 B 1 HETATM 24 N N7 GNP . . . F 2 79.724 -37.113 -109.882 1 27.61 ? N7 GNP 201 B 1 HETATM 25 C C5 GNP . . . F 2 80.209 -36.355 -108.817 1 27 ? C5 GNP 201 B 1 HETATM 26 C C6 GNP . . . F 2 79.618 -36.057 -107.567 1 26.42 ? C6 GNP 201 B 1 HETATM 27 O O6 GNP . . . F 2 78.494 -36.394 -107.13 1 22.91 ? O6 GNP 201 B 1 HETATM 28 N N1 GNP . . . F 2 80.477 -35.269 -106.788 1 29 ? N1 GNP 201 B 1 HETATM 29 C C2 GNP . . . F 2 81.722 -34.812 -107.155 1 27.83 ? C2 GNP 201 B 1 HETATM 30 N N2 GNP . . . F 2 82.376 -34.062 -106.258 1 25.42 ? N2 GNP 201 B 1 HETATM 31 N N3 GNP . . . F 2 82.281 -35.078 -108.327 1 31.6 ? N3 GNP 201 B 1 HETATM 32 C C4 GNP . . . F 2 81.468 -35.853 -109.099 1 24.99 ? C4 GNP 201 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 399 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #