data_7JIH # _model_server_result.job_id J72dtAD8iOUEwc7QkWp-Tw _model_server_result.datetime_utc '2025-08-31 02:35:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":203}' # _entry.id 7JIH # _exptl.entry_id 7JIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.81 _cell.angle_gamma 90 _cell.entry_id 7JIH _cell.length_a 55.675 _cell.length_b 49.832 _cell.length_c 57.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc2 C O2G GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc3 C O2B GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc4 D MG MG . A MG 202 1_555 I O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 D MG MG . A MG 202 1_555 I O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc6 D MG MG . A MG 202 1_555 I O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc7 B OG SER 17 B SER 17 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc8 F O2G GNP . B GNP 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc9 F O2B GNP . B GNP 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc10 G MG MG . B MG 202 1_555 J O HOH . B HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc11 G MG MG . B MG 202 1_555 J O HOH . B HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc12 G MG MG . B MG 202 1_555 J O HOH . B HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 180 n n C1 C2 GOL sing 181 n n C1 H11 GOL sing 182 n n C1 H12 GOL sing 183 n n O1 HO1 GOL sing 184 n n C2 O2 GOL sing 185 n n C2 C3 GOL sing 186 n n C2 H2 GOL sing 187 n n O2 HO2 GOL sing 188 n n C3 O3 GOL sing 189 n n C3 H31 GOL sing 190 n n C3 H32 GOL sing 191 n n O3 HO3 GOL sing 192 n n # _atom_sites.entry_id 7JIH _atom_sites.fract_transf_matrix[1][1] 0.017961 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009475 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GNP A 1 201 528 GNP GNP . D 3 MG A 1 202 529 MG MG . E 4 GOL A 1 203 53 GOL GOL . F 2 GNP B 1 201 528 GNP GNP . G 3 MG B 1 202 529 MG MG . H 4 GOL B 1 203 530 GOL GOL . I 5 HOH A 1 301 80 HOH HOH . I 5 HOH A 2 302 109 HOH HOH . I 5 HOH A 3 303 37 HOH HOH . I 5 HOH A 4 304 15 HOH HOH . I 5 HOH A 5 305 46 HOH HOH . I 5 HOH A 6 306 45 HOH HOH . I 5 HOH A 7 307 17 HOH HOH . I 5 HOH A 8 308 103 HOH HOH . I 5 HOH A 9 309 77 HOH HOH . I 5 HOH A 10 310 55 HOH HOH . I 5 HOH A 11 311 50 HOH HOH . I 5 HOH A 12 312 38 HOH HOH . I 5 HOH A 13 313 104 HOH HOH . I 5 HOH A 14 314 8 HOH HOH . I 5 HOH A 15 315 26 HOH HOH . I 5 HOH A 16 316 76 HOH HOH . I 5 HOH A 17 317 6 HOH HOH . I 5 HOH A 18 318 108 HOH HOH . I 5 HOH A 19 319 83 HOH HOH . I 5 HOH A 20 320 14 HOH HOH . I 5 HOH A 21 321 1 HOH HOH . I 5 HOH A 22 322 41 HOH HOH . I 5 HOH A 23 323 9 HOH HOH . I 5 HOH A 24 324 47 HOH HOH . I 5 HOH A 25 325 94 HOH HOH . I 5 HOH A 26 326 18 HOH HOH . I 5 HOH A 27 327 2 HOH HOH . I 5 HOH A 28 328 48 HOH HOH . I 5 HOH A 29 329 106 HOH HOH . I 5 HOH A 30 330 54 HOH HOH . I 5 HOH A 31 331 102 HOH HOH . I 5 HOH A 32 332 81 HOH HOH . I 5 HOH A 33 333 21 HOH HOH . I 5 HOH A 34 334 39 HOH HOH . I 5 HOH A 35 335 64 HOH HOH . I 5 HOH A 36 336 79 HOH HOH . I 5 HOH A 37 337 34 HOH HOH . I 5 HOH A 38 338 25 HOH HOH . I 5 HOH A 39 339 89 HOH HOH . I 5 HOH A 40 340 65 HOH HOH . I 5 HOH A 41 341 22 HOH HOH . I 5 HOH A 42 342 88 HOH HOH . I 5 HOH A 43 343 19 HOH HOH . I 5 HOH A 44 344 36 HOH HOH . I 5 HOH A 45 345 7 HOH HOH . I 5 HOH A 46 346 13 HOH HOH . I 5 HOH A 47 347 52 HOH HOH . I 5 HOH A 48 348 24 HOH HOH . I 5 HOH A 49 349 4 HOH HOH . I 5 HOH A 50 350 67 HOH HOH . I 5 HOH A 51 351 66 HOH HOH . I 5 HOH A 52 352 49 HOH HOH . I 5 HOH A 53 353 90 HOH HOH . I 5 HOH A 54 354 84 HOH HOH . I 5 HOH A 55 355 82 HOH HOH . J 5 HOH B 1 301 91 HOH HOH . J 5 HOH B 2 302 72 HOH HOH . J 5 HOH B 3 303 35 HOH HOH . J 5 HOH B 4 304 29 HOH HOH . J 5 HOH B 5 305 75 HOH HOH . J 5 HOH B 6 306 62 HOH HOH . J 5 HOH B 7 307 16 HOH HOH . J 5 HOH B 8 308 28 HOH HOH . J 5 HOH B 9 309 31 HOH HOH . J 5 HOH B 10 310 57 HOH HOH . J 5 HOH B 11 311 85 HOH HOH . J 5 HOH B 12 312 60 HOH HOH . J 5 HOH B 13 313 56 HOH HOH . J 5 HOH B 14 314 27 HOH HOH . J 5 HOH B 15 315 5 HOH HOH . J 5 HOH B 16 316 92 HOH HOH . J 5 HOH B 17 317 59 HOH HOH . J 5 HOH B 18 318 11 HOH HOH . J 5 HOH B 19 319 74 HOH HOH . J 5 HOH B 20 320 73 HOH HOH . J 5 HOH B 21 321 32 HOH HOH . J 5 HOH B 22 322 23 HOH HOH . J 5 HOH B 23 323 87 HOH HOH . J 5 HOH B 24 324 12 HOH HOH . J 5 HOH B 25 325 58 HOH HOH . J 5 HOH B 26 326 44 HOH HOH . J 5 HOH B 27 327 33 HOH HOH . J 5 HOH B 28 328 30 HOH HOH . J 5 HOH B 29 329 101 HOH HOH . J 5 HOH B 30 330 10 HOH HOH . J 5 HOH B 31 331 42 HOH HOH . J 5 HOH B 32 332 40 HOH HOH . J 5 HOH B 33 333 20 HOH HOH . J 5 HOH B 34 334 110 HOH HOH . J 5 HOH B 35 335 93 HOH HOH . J 5 HOH B 36 336 63 HOH HOH . J 5 HOH B 37 337 69 HOH HOH . J 5 HOH B 38 338 97 HOH HOH . J 5 HOH B 39 339 86 HOH HOH . J 5 HOH B 40 340 3 HOH HOH . J 5 HOH B 41 341 99 HOH HOH . J 5 HOH B 42 342 70 HOH HOH . J 5 HOH B 43 343 112 HOH HOH . J 5 HOH B 44 344 95 HOH HOH . J 5 HOH B 45 345 43 HOH HOH . J 5 HOH B 46 346 98 HOH HOH . J 5 HOH B 47 347 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 83.002 -39.205 -121.599 1 47.78 ? C1 GOL 203 B 1 HETATM 2 O O1 GOL . . . H 4 82.724 -40.587 -121.553 1 42.38 ? O1 GOL 203 B 1 HETATM 3 C C2 GOL . . . H 4 82.186 -38.557 -122.715 1 50.54 ? C2 GOL 203 B 1 HETATM 4 O O2 GOL . . . H 4 81.117 -39.377 -123.166 1 49.55 ? O2 GOL 203 B 1 HETATM 5 C C3 GOL . . . H 4 81.71 -37.186 -122.245 1 48.6 ? C3 GOL 203 B 1 HETATM 6 O O3 GOL . . . H 4 82.577 -36.28 -122.89 1 53.02 ? O3 GOL 203 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 416 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #