data_7JIJ # _model_server_result.job_id BVYGLVrqyNIx-NOb-OU3IQ _model_server_result.datetime_utc '2025-07-18 01:57:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 7JIJ # _exptl.entry_id 7JIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JIJ _cell.length_a 126.688 _cell.length_b 126.688 _cell.length_c 332.384 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E GLC 1 C 1 GLC M 900 MAL 5 n E GLC 2 C 2 GLC M 900 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 373 M PHE 373 1_555 B N VAL 1 A VAL 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C ARG 161 A ARG 173 1_555 B N TPO 162 A TPO 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C TPO 162 A TPO 174 1_555 B N SER 163 A SER 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 E O4 GLC . C GLC 1 1_555 E C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 153 n n PG O2G ATP sing 154 n n PG O3G ATP sing 155 n n PG O3B ATP sing 156 n n O2G HOG2 ATP sing 157 n n O3G HOG3 ATP sing 158 n n PB O1B ATP doub 159 n n PB O2B ATP sing 160 n n PB O3B ATP sing 161 n n PB O3A ATP sing 162 n n O2B HOB2 ATP sing 163 n n PA O1A ATP doub 164 n n PA O2A ATP sing 165 n n PA O3A ATP sing 166 n n PA O5' ATP sing 167 n n O2A HOA2 ATP sing 168 n n O5' C5' ATP sing 169 n n C5' C4' ATP sing 170 n n C5' "H5'1" ATP sing 171 n n C5' "H5'2" ATP sing 172 n n C4' O4' ATP sing 173 n n C4' C3' ATP sing 174 n n C4' H4' ATP sing 175 n n O4' C1' ATP sing 176 n n C3' O3' ATP sing 177 n n C3' C2' ATP sing 178 n n C3' H3' ATP sing 179 n n O3' HO3' ATP sing 180 n n C2' O2' ATP sing 181 n n C2' C1' ATP sing 182 n n C2' H2' ATP sing 183 n n O2' HO2' ATP sing 184 n n C1' N9 ATP sing 185 n n C1' H1' ATP sing 186 n n N9 C8 ATP sing 187 n y N9 C4 ATP sing 188 n y C8 N7 ATP doub 189 n y C8 H8 ATP sing 190 n n N7 C5 ATP sing 191 n y C5 C6 ATP sing 192 n y C5 C4 ATP doub 193 n y C6 N6 ATP sing 194 n n C6 N1 ATP doub 195 n y N6 HN61 ATP sing 196 n n N6 HN62 ATP sing 197 n n N1 C2 ATP sing 198 n y C2 N3 ATP doub 199 n y C2 H2 ATP sing 200 n n N3 C4 ATP sing 201 n y # _atom_sites.entry_id 7JIJ _atom_sites.fract_transf_matrix[1][1] 0.007893 _atom_sites.fract_transf_matrix[1][2] 0.004557 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ATP G 1 401 1002 ATP ATP . G 7 AMP G 1 402 1003 AMP AMP . H 8 ADP G 1 403 1004 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 6 -61.46 17.207 16.56 1 379.98 ? PG ATP 401 G 1 HETATM 2 O O1G ATP . . . F 6 -61.655 16.899 18.024 1 379.98 ? O1G ATP 401 G 1 HETATM 3 O O2G ATP . . . F 6 -61.897 16.11 15.617 1 379.98 ? O2G ATP 401 G 1 HETATM 4 O O3G ATP . . . F 6 -60.112 17.8 16.224 1 379.98 ? O3G ATP 401 G 1 HETATM 5 P PB ATP . . . F 6 -62.136 19.93 16.629 1 379.98 ? PB ATP 401 G 1 HETATM 6 O O1B ATP . . . F 6 -61.19 19.96 17.806 1 379.98 ? O1B ATP 401 G 1 HETATM 7 O O2B ATP . . . F 6 -61.747 20.596 15.329 1 379.98 ? O2B ATP 401 G 1 HETATM 8 O O3B ATP . . . F 6 -62.505 18.401 16.279 1 379.98 ? O3B ATP 401 G 1 HETATM 9 P PA ATP . . . F 6 -64.251 20.248 18.473 1 379.98 ? PA ATP 401 G 1 HETATM 10 O O1A ATP . . . F 6 -63.195 20.18 19.546 1 379.98 ? O1A ATP 401 G 1 HETATM 11 O O2A ATP . . . F 6 -65.208 19.102 18.26 1 379.98 ? O2A ATP 401 G 1 HETATM 12 O O3A ATP . . . F 6 -63.552 20.557 17.06 1 377.44 ? O3A ATP 401 G 1 HETATM 13 O O5' ATP . . . F 6 -65.088 21.604 18.654 1 379.98 ? O5' ATP 401 G 1 HETATM 14 C C5' ATP . . . F 6 -65.216 22.468 17.53 1 379.98 ? C5' ATP 401 G 1 HETATM 15 C C4' ATP . . . F 6 -66.065 23.663 17.918 1 379.98 ? C4' ATP 401 G 1 HETATM 16 O O4' ATP . . . F 6 -67.326 23.204 18.404 1 379.98 ? O4' ATP 401 G 1 HETATM 17 C C3' ATP . . . F 6 -65.403 24.458 19.028 1 379.98 ? C3' ATP 401 G 1 HETATM 18 O O3' ATP . . . F 6 -64.998 25.742 18.549 1 379.98 ? O3' ATP 401 G 1 HETATM 19 C C2' ATP . . . F 6 -66.464 24.628 20.092 1 379.98 ? C2' ATP 401 G 1 HETATM 20 O O2' ATP . . . F 6 -66.726 26.023 20.261 1 379.98 ? O2' ATP 401 G 1 HETATM 21 C C1' ATP . . . F 6 -67.71 23.928 19.573 1 379.98 ? C1' ATP 401 G 1 HETATM 22 N N9 ATP . . . F 6 -68.243 22.986 20.595 1 379.98 ? N9 ATP 401 G 1 HETATM 23 C C8 ATP . . . F 6 -67.764 21.75 20.837 1 379.98 ? C8 ATP 401 G 1 HETATM 24 N N7 ATP . . . F 6 -68.463 21.136 21.828 1 379.98 ? N7 ATP 401 G 1 HETATM 25 C C5 ATP . . . F 6 -69.421 21.989 22.241 1 379.98 ? C5 ATP 401 G 1 HETATM 26 C C6 ATP . . . F 6 -70.505 21.973 23.255 1 379.98 ? C6 ATP 401 G 1 HETATM 27 N N6 ATP . . . F 6 -70.712 20.894 24.047 1 379.98 ? N6 ATP 401 G 1 HETATM 28 N N1 ATP . . . F 6 -71.285 23.071 23.366 1 379.98 ? N1 ATP 401 G 1 HETATM 29 C C2 ATP . . . F 6 -71.094 24.152 22.587 1 379.98 ? C2 ATP 401 G 1 HETATM 30 N N3 ATP . . . F 6 -70.131 24.235 21.648 1 379.98 ? N3 ATP 401 G 1 HETATM 31 C C4 ATP . . . F 6 -69.273 23.207 21.426 1 379.98 ? C4 ATP 401 G 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 451 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #