data_7JIJ # _model_server_result.job_id Xi7of-wmUKnpYFAYAPPanQ _model_server_result.datetime_utc '2024-10-11 02:18:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 7JIJ # _exptl.entry_id 7JIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JIJ _cell.length_a 126.688 _cell.length_b 126.688 _cell.length_c 332.384 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E GLC 1 C 1 GLC M 900 MAL 5 n E GLC 2 C 2 GLC M 900 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 373 M PHE 373 1_555 B N VAL 1 A VAL 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C ARG 161 A ARG 173 1_555 B N TPO 162 A TPO 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C TPO 162 A TPO 174 1_555 B N SER 163 A SER 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 E O4 GLC . C GLC 1 1_555 E C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 57 n n P O2P AMP sing 58 n n P O3P AMP sing 59 n n P O5' AMP sing 60 n n O2P HOP2 AMP sing 61 n n O3P HOP3 AMP sing 62 n n O5' C5' AMP sing 63 n n C5' C4' AMP sing 64 n n C5' "H5'1" AMP sing 65 n n C5' "H5'2" AMP sing 66 n n C4' O4' AMP sing 67 n n C4' C3' AMP sing 68 n n C4' H4' AMP sing 69 n n O4' C1' AMP sing 70 n n C3' O3' AMP sing 71 n n C3' C2' AMP sing 72 n n C3' H3' AMP sing 73 n n O3' HO3' AMP sing 74 n n C2' O2' AMP sing 75 n n C2' C1' AMP sing 76 n n C2' H2' AMP sing 77 n n O2' HO2' AMP sing 78 n n C1' N9 AMP sing 79 n n C1' H1' AMP sing 80 n n N9 C8 AMP sing 81 n y N9 C4 AMP sing 82 n y C8 N7 AMP doub 83 n y C8 H8 AMP sing 84 n n N7 C5 AMP sing 85 n y C5 C6 AMP sing 86 n y C5 C4 AMP doub 87 n y C6 N6 AMP sing 88 n n C6 N1 AMP doub 89 n y N6 HN61 AMP sing 90 n n N6 HN62 AMP sing 91 n n N1 C2 AMP sing 92 n y C2 N3 AMP doub 93 n y C2 H2 AMP sing 94 n n N3 C4 AMP sing 95 n y # _atom_sites.entry_id 7JIJ _atom_sites.fract_transf_matrix[1][1] 0.007893 _atom_sites.fract_transf_matrix[1][2] 0.004557 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ATP G 1 401 1002 ATP ATP . G 7 AMP G 1 402 1003 AMP AMP . H 8 ADP G 1 403 1004 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . G 7 -59.597 13.172 25.616 1 342.91 ? P AMP 402 G 1 HETATM 2 O O1P AMP . . . G 7 -58.914 12.224 24.802 1 342.91 ? O1P AMP 402 G 1 HETATM 3 O O2P AMP . . . G 7 -61.134 13.06 25.194 1 342.91 ? O2P AMP 402 G 1 HETATM 4 O O3P AMP . . . G 7 -58.874 14.557 25.387 1 342.91 ? O3P AMP 402 G 1 HETATM 5 O O5' AMP . . . G 7 -59.432 12.724 27.14 1 394.06 ? O5' AMP 402 G 1 HETATM 6 C C5' AMP . . . G 7 -59.388 11.349 27.505 1 394.06 ? C5' AMP 402 G 1 HETATM 7 C C4' AMP . . . G 7 -59.912 11.196 28.898 1 394.06 ? C4' AMP 402 G 1 HETATM 8 O O4' AMP . . . G 7 -59.762 12.453 29.617 1 394.06 ? O4' AMP 402 G 1 HETATM 9 C C3' AMP . . . G 7 -61.329 10.726 29.086 1 394.06 ? C3' AMP 402 G 1 HETATM 10 O O3' AMP . . . G 7 -61.394 9.408 29.57 1 394.06 ? O3' AMP 402 G 1 HETATM 11 C C2' AMP . . . G 7 -62.004 11.7 30.008 1 394.06 ? C2' AMP 402 G 1 HETATM 12 O O2' AMP . . . G 7 -62.574 11.181 31.175 1 394.06 ? O2' AMP 402 G 1 HETATM 13 C C1' AMP . . . G 7 -60.978 12.772 30.278 1 394.06 ? C1' AMP 402 G 1 HETATM 14 N N9 AMP . . . G 7 -61.394 14.154 30.055 1 342.91 ? N9 AMP 402 G 1 HETATM 15 C C8 AMP . . . G 7 -61.355 14.814 28.889 1 342.91 ? C8 AMP 402 G 1 HETATM 16 N N7 AMP . . . G 7 -61.831 16.069 29.059 1 342.91 ? N7 AMP 402 G 1 HETATM 17 C C5 AMP . . . G 7 -62.182 16.2 30.354 1 342.91 ? C5 AMP 402 G 1 HETATM 18 C C6 AMP . . . G 7 -62.728 17.281 31.075 1 342.91 ? C6 AMP 402 G 1 HETATM 19 N N6 AMP . . . G 7 -63.016 18.573 30.4 1 342.91 ? N6 AMP 402 G 1 HETATM 20 N N1 AMP . . . G 7 -62.974 17.101 32.388 1 342.91 ? N1 AMP 402 G 1 HETATM 21 C C2 AMP . . . G 7 -62.701 15.923 32.968 1 342.64 ? C2 AMP 402 G 1 HETATM 22 N N3 AMP . . . G 7 -62.184 14.876 32.312 1 342.91 ? N3 AMP 402 G 1 HETATM 23 C C4 AMP . . . G 7 -61.912 14.988 30.991 1 342.91 ? C4 AMP 402 G 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #