data_7JIS
#
_model_server_result.job_id            Vyqxncc8Kh21IFvM0rA3Hg 
_model_server_result.datetime_utc      '2025-02-05 18:08:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jis 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1101}' 
#
_entry.id    7JIS 
#
_exptl.entry_id    7JIS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              475.544 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S)-3-benzyl-5-[9-ethyl-8-(2-methylpyrimidin-5-yl)-9H-purin-6-yl]-3-methyl-1,3-dihydro-2H-indol-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7JIS 
_cell.length_a            90.453 
_cell.length_b            108.255 
_cell.length_c            142.34 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JIS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H25 N7 O' 
_chem_comp.formula_weight    475.544 
_chem_comp.id                VBS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S)-3-benzyl-5-[9-ethyl-8-(2-methylpyrimidin-5-yl)-9H-purin-6-yl]-3-methyl-1,3-dihydro-2H-indol-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C34 C31 VBS sing 376 n n 
N32 C31 VBS doub 377 n y 
N32 C33 VBS sing 378 n y 
C31 N30 VBS sing 379 n y 
C33 C28 VBS doub 380 n y 
N30 C29 VBS doub 381 n y 
C20 C21 VBS doub 382 n y 
C20 C19 VBS sing 383 n y 
C35 N25 VBS sing 384 n n 
C35 C36 VBS sing 385 n n 
C21 C22 VBS sing 386 n y 
C28 C29 VBS sing 387 n y 
C28 C26 VBS sing 388 n n 
N25 C26 VBS sing 389 n y 
N25 C2 VBS sing 390 n y 
C26 N27 VBS doub 391 n y 
C19 C18 VBS doub 392 n y 
C22 C23 VBS doub 393 n y 
C2 N3 VBS doub 394 n y 
C2 C1 VBS sing 395 n y 
N27 C1 VBS sing 396 n y 
N3 C4 VBS sing 397 n y 
C1 C6 VBS doub 398 n y 
C18 C23 VBS sing 399 n y 
C18 C17 VBS sing 400 n n 
C4 N5 VBS doub 401 n y 
C6 N5 VBS sing 402 n y 
C6 C7 VBS sing 403 n n 
C7 C12 VBS doub 404 n y 
C7 C8 VBS sing 405 n y 
C17 C16 VBS sing 406 n n 
C12 C11 VBS sing 407 n y 
C8 C9 VBS doub 408 n y 
C11 C10 VBS doub 409 n y 
C9 C10 VBS sing 410 n y 
C9 C16 VBS sing 411 n n 
C10 N13 VBS sing 412 n n 
C16 C14 VBS sing 413 n n 
C16 C24 VBS sing 414 n n 
N13 C14 VBS sing 415 n n 
C14 O15 VBS doub 416 n n 
C4 H1 VBS sing 417 n n 
C8 H2 VBS sing 418 n n 
C11 H3 VBS sing 419 n n 
C12 H4 VBS sing 420 n n 
N13 H5 VBS sing 421 n n 
C17 H6 VBS sing 422 n n 
C17 H7 VBS sing 423 n n 
C19 H8 VBS sing 424 n n 
C21 H9 VBS sing 425 n n 
C23 H10 VBS sing 426 n n 
C24 H11 VBS sing 427 n n 
C24 H12 VBS sing 428 n n 
C24 H13 VBS sing 429 n n 
C33 H14 VBS sing 430 n n 
C34 H15 VBS sing 431 n n 
C34 H16 VBS sing 432 n n 
C34 H17 VBS sing 433 n n 
C35 H18 VBS sing 434 n n 
C35 H19 VBS sing 435 n n 
C36 H20 VBS sing 436 n n 
C36 H21 VBS sing 437 n n 
C36 H22 VBS sing 438 n n 
C20 H23 VBS sing 439 n n 
C22 H24 VBS sing 440 n n 
C29 H25 VBS sing 441 n n 
#
_atom_sites.entry_id                     7JIS 
_atom_sites.fract_transf_matrix[1][1]    0.011055 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009237 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007025 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 VBS A 1 1101 1 VBS INX . 
D 4 HOH A 1 1201 17 HOH HOH . 
D 4 HOH A 2 1202 7 HOH HOH . 
D 4 HOH A 3 1203 14 HOH HOH . 
D 4 HOH A 4 1204 4 HOH HOH . 
D 4 HOH A 5 1205 16 HOH HOH . 
D 4 HOH A 6 1206 3 HOH HOH . 
D 4 HOH A 7 1207 15 HOH HOH . 
D 4 HOH A 8 1208 13 HOH HOH . 
D 4 HOH A 9 1209 6 HOH HOH . 
D 4 HOH A 10 1210 12 HOH HOH . 
D 4 HOH A 11 1211 5 HOH HOH . 
D 4 HOH A 12 1212 1 HOH HOH . 
D 4 HOH A 13 1213 9 HOH HOH . 
D 4 HOH A 14 1214 8 HOH HOH . 
D 4 HOH A 15 1215 11 HOH HOH . 
D 4 HOH A 16 1216 18 HOH HOH . 
D 4 HOH A 17 1217 2 HOH HOH . 
D 4 HOH A 18 1218 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 VBS . . . C 3 36.678 14.205 33.344 1 54.37 ? C1 VBS 1101 A 1 
HETATM 2 C C2 VBS . . . C 3 35.759 15.145 32.839 1 49.76 ? C2 VBS 1101 A 1 
HETATM 3 C C4 VBS . . . C 3 36.951 16.869 33.763 1 54.46 ? C4 VBS 1101 A 1 
HETATM 4 C C6 VBS . . . C 3 37.768 14.719 34.105 1 51.27 ? C6 VBS 1101 A 1 
HETATM 5 C C7 VBS . . . C 3 38.83 13.869 34.728 1 50.14 ? C7 VBS 1101 A 1 
HETATM 6 C C8 VBS . . . C 3 40.088 14.422 35.059 1 64.37 ? C8 VBS 1101 A 1 
HETATM 7 C C11 VBS . . . C 3 39.601 11.732 35.555 1 67.6 ? C11 VBS 1101 A 1 
HETATM 8 C C12 VBS . . . C 3 38.605 12.512 35.005 1 49.51 ? C12 VBS 1101 A 1 
HETATM 9 N N13 VBS . . . C 3 41.963 11.699 36.453 1 71.87 ? N13 VBS 1101 A 1 
HETATM 10 C C16 VBS . . . C 3 42.485 13.912 36.08 1 69.02 ? C16 VBS 1101 A 1 
HETATM 11 C C17 VBS . . . C 3 43.387 14.481 34.965 1 75.98 ? C17 VBS 1101 A 1 
HETATM 12 C C18 VBS . . . C 3 43.664 13.597 33.762 1 68.31 ? C18 VBS 1101 A 1 
HETATM 13 C C19 VBS . . . C 3 42.984 13.815 32.57 1 68.62 ? C19 VBS 1101 A 1 
HETATM 14 C C21 VBS . . . C 3 44.203 12.024 31.507 1 80.46 ? C21 VBS 1101 A 1 
HETATM 15 C C23 VBS . . . C 3 44.636 12.603 33.804 1 77.91 ? C23 VBS 1101 A 1 
HETATM 16 C C24 VBS . . . C 3 42.412 14.955 37.207 1 60.45 ? C24 VBS 1101 A 1 
HETATM 17 C C31 VBS . . . C 3 33.027 9.949 30.531 1 70.91 ? C31 VBS 1101 A 1 
HETATM 18 C C33 VBS . . . C 3 35.043 10.971 30.99 1 50.62 ? C33 VBS 1101 A 1 
HETATM 19 C C34 VBS . . . C 3 32.294 8.789 29.905 1 57.61 ? C34 VBS 1101 A 1 
HETATM 20 C C35 VBS . . . C 3 33.689 15.119 31.502 1 52.93 ? C35 VBS 1101 A 1 
HETATM 21 C C36 VBS . . . C 3 32.752 15.807 32.5 1 47.41 ? C36 VBS 1101 A 1 
HETATM 22 N N3 VBS . . . C 3 35.919 16.44 33.069 1 61.76 ? N3 VBS 1101 A 1 
HETATM 23 N N5 VBS . . . C 3 37.852 16.044 34.246 1 54.7 ? N5 VBS 1101 A 1 
HETATM 24 C C9 VBS . . . C 3 41.072 13.628 35.613 1 65.09 ? C9 VBS 1101 A 1 
HETATM 25 C C10 VBS . . . C 3 40.842 12.285 35.878 1 63.96 ? C10 VBS 1101 A 1 
HETATM 26 C C14 VBS . . . C 3 42.965 12.571 36.612 1 71.88 ? C14 VBS 1101 A 1 
HETATM 27 O O15 VBS . . . C 3 44.047 12.314 37.097 1 91.15 ? O15 VBS 1101 A 1 
HETATM 28 C C20 VBS . . . C 3 43.244 13.027 31.451 1 73.57 ? C20 VBS 1101 A 1 
HETATM 29 C C22 VBS . . . C 3 44.898 11.812 32.689 1 81.66 ? C22 VBS 1101 A 1 
HETATM 30 N N25 VBS . . . C 3 34.804 14.444 32.161 1 50 ? N25 VBS 1101 A 1 
HETATM 31 C C26 VBS . . . C 3 35.121 13.112 32.249 1 49.19 ? C26 VBS 1101 A 1 
HETATM 32 N N27 VBS . . . C 3 36.236 12.978 32.944 1 53.06 ? N27 VBS 1101 A 1 
HETATM 33 C C28 VBS . . . C 3 34.361 11.997 31.653 1 42.38 ? C28 VBS 1101 A 1 
HETATM 34 C C29 VBS . . . C 3 32.957 11.924 31.718 1 57.23 ? C29 VBS 1101 A 1 
HETATM 35 N N30 VBS . . . C 3 32.335 10.896 31.153 1 54.03 ? N30 VBS 1101 A 1 
HETATM 36 N N32 VBS . . . C 3 34.353 9.983 30.446 1 61.53 ? N32 VBS 1101 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           36 
#