data_7JJ0 # _model_server_result.job_id qvZXj8Bi7wC6DpfySxSfgQ _model_server_result.datetime_utc '2024-10-19 15:25:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jj0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7JJ0 # _exptl.entry_id 7JJ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JJ0 _cell.length_a 99.311 _cell.length_b 99.311 _cell.length_c 133.512 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JJ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O ASN 206 B ASN 206 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc2 B OD2 ASP 220 B ASP 220 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc3 E O2G GCP . B GCP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? # _chem_comp.formula 'C11 H18 N5 O13 P3' _chem_comp.formula_weight 521.208 _chem_comp.id GCP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GCP doub 83 n n PG O2G GCP sing 84 n n PG O3G GCP sing 85 n n PG C3B GCP sing 86 n n O2G HOG2 GCP sing 87 n n O3G HOG3 GCP sing 88 n n C3B PB GCP sing 89 n n C3B H3B1 GCP sing 90 n n C3B H3B2 GCP sing 91 n n PB O1B GCP doub 92 n n PB O2B GCP sing 93 n n PB O3A GCP sing 94 n n O2B HOB2 GCP sing 95 n n O3A PA GCP sing 96 n n PA O1A GCP doub 97 n n PA O2A GCP sing 98 n n PA O5' GCP sing 99 n n O2A HOA2 GCP sing 100 n n O5' C5' GCP sing 101 n n C5' C4' GCP sing 102 n n C5' "H5'2" GCP sing 103 n n C5' "H5'1" GCP sing 104 n n C4' O4' GCP sing 105 n n C4' C3' GCP sing 106 n n C4' H4' GCP sing 107 n n O4' C1' GCP sing 108 n n C3' O3' GCP sing 109 n n C3' C2' GCP sing 110 n n C3' H3' GCP sing 111 n n O3' HO3' GCP sing 112 n n C2' O2' GCP sing 113 n n C2' C1' GCP sing 114 n n C2' H2' GCP sing 115 n n O2' HO2' GCP sing 116 n n C1' N9 GCP sing 117 n n C1' H1' GCP sing 118 n n N9 C8 GCP sing 119 n y N9 C4 GCP sing 120 n y C8 N7 GCP doub 121 n y C8 H8 GCP sing 122 n n N7 C5 GCP sing 123 n y C5 C6 GCP sing 124 n y C5 C4 GCP doub 125 n y C6 O6 GCP doub 126 n n C6 N1 GCP sing 127 n y N1 C2 GCP sing 128 n y N1 HN1 GCP sing 129 n n C2 N2 GCP sing 130 n n C2 N3 GCP doub 131 n y N2 HN21 GCP sing 132 n n N2 HN22 GCP sing 133 n n N3 C4 GCP sing 134 n y # _atom_sites.entry_id 7JJ0 _atom_sites.fract_transf_matrix[1][1] 0.010069 _atom_sites.fract_transf_matrix[1][2] 0.005814 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GCP B 1 401 401 GCP GCP . F 4 MG B 1 402 1 MG MG . G 5 HOH A 1 401 21 HOH HOH . G 5 HOH A 2 402 46 HOH HOH . G 5 HOH A 3 403 10 HOH HOH . G 5 HOH A 4 404 97 HOH HOH . G 5 HOH A 5 405 102 HOH HOH . G 5 HOH A 6 406 4 HOH HOH . G 5 HOH A 7 407 3 HOH HOH . G 5 HOH A 8 408 1 HOH HOH . G 5 HOH A 9 409 84 HOH HOH . G 5 HOH A 10 410 87 HOH HOH . G 5 HOH A 11 411 16 HOH HOH . G 5 HOH A 12 412 81 HOH HOH . G 5 HOH A 13 413 74 HOH HOH . G 5 HOH A 14 414 19 HOH HOH . G 5 HOH A 15 415 25 HOH HOH . G 5 HOH A 16 416 43 HOH HOH . G 5 HOH A 17 417 26 HOH HOH . G 5 HOH A 18 418 90 HOH HOH . G 5 HOH A 19 419 71 HOH HOH . G 5 HOH A 20 420 85 HOH HOH . G 5 HOH A 21 421 62 HOH HOH . G 5 HOH A 22 422 22 HOH HOH . G 5 HOH A 23 423 58 HOH HOH . G 5 HOH A 24 424 103 HOH HOH . G 5 HOH A 25 425 31 HOH HOH . G 5 HOH A 26 426 14 HOH HOH . G 5 HOH A 27 427 24 HOH HOH . G 5 HOH A 28 428 54 HOH HOH . G 5 HOH A 29 429 78 HOH HOH . G 5 HOH A 30 430 92 HOH HOH . G 5 HOH A 31 431 53 HOH HOH . G 5 HOH A 32 432 96 HOH HOH . G 5 HOH A 33 433 30 HOH HOH . G 5 HOH A 34 434 76 HOH HOH . G 5 HOH A 35 435 72 HOH HOH . G 5 HOH A 36 436 60 HOH HOH . G 5 HOH A 37 437 23 HOH HOH . G 5 HOH A 38 438 94 HOH HOH . H 5 HOH B 1 501 89 HOH HOH . H 5 HOH B 2 502 2 HOH HOH . H 5 HOH B 3 503 20 HOH HOH . H 5 HOH B 4 504 44 HOH HOH . H 5 HOH B 5 505 40 HOH HOH . H 5 HOH B 6 506 66 HOH HOH . H 5 HOH B 7 507 5 HOH HOH . H 5 HOH B 8 508 79 HOH HOH . H 5 HOH B 9 509 52 HOH HOH . I 5 HOH C 1 401 100 HOH HOH . I 5 HOH C 2 402 9 HOH HOH . I 5 HOH C 3 403 99 HOH HOH . I 5 HOH C 4 404 18 HOH HOH . I 5 HOH C 5 405 49 HOH HOH . I 5 HOH C 6 406 8 HOH HOH . I 5 HOH C 7 407 13 HOH HOH . I 5 HOH C 8 408 91 HOH HOH . I 5 HOH C 9 409 86 HOH HOH . I 5 HOH C 10 410 7 HOH HOH . I 5 HOH C 11 411 50 HOH HOH . I 5 HOH C 12 412 39 HOH HOH . I 5 HOH C 13 413 28 HOH HOH . I 5 HOH C 14 414 70 HOH HOH . I 5 HOH C 15 415 73 HOH HOH . I 5 HOH C 16 416 98 HOH HOH . I 5 HOH C 17 417 63 HOH HOH . I 5 HOH C 18 418 80 HOH HOH . I 5 HOH C 19 419 68 HOH HOH . I 5 HOH C 20 420 67 HOH HOH . I 5 HOH C 21 421 75 HOH HOH . I 5 HOH C 22 422 42 HOH HOH . I 5 HOH C 23 423 38 HOH HOH . I 5 HOH C 24 424 51 HOH HOH . I 5 HOH C 25 425 6 HOH HOH . I 5 HOH C 26 426 32 HOH HOH . I 5 HOH C 27 427 65 HOH HOH . I 5 HOH C 28 428 59 HOH HOH . I 5 HOH C 29 429 69 HOH HOH . I 5 HOH C 30 430 88 HOH HOH . I 5 HOH C 31 431 27 HOH HOH . I 5 HOH C 32 432 33 HOH HOH . I 5 HOH C 33 433 35 HOH HOH . I 5 HOH C 34 434 41 HOH HOH . I 5 HOH C 35 435 61 HOH HOH . I 5 HOH C 36 436 12 HOH HOH . I 5 HOH C 37 437 83 HOH HOH . I 5 HOH C 38 438 64 HOH HOH . I 5 HOH C 39 439 101 HOH HOH . I 5 HOH C 40 440 77 HOH HOH . I 5 HOH C 41 441 29 HOH HOH . I 5 HOH C 42 442 93 HOH HOH . J 5 HOH D 1 401 95 HOH HOH . J 5 HOH D 2 402 45 HOH HOH . J 5 HOH D 3 403 57 HOH HOH . J 5 HOH D 4 404 47 HOH HOH . J 5 HOH D 5 405 55 HOH HOH . J 5 HOH D 6 406 36 HOH HOH . J 5 HOH D 7 407 15 HOH HOH . J 5 HOH D 8 408 56 HOH HOH . J 5 HOH D 9 409 82 HOH HOH . J 5 HOH D 10 410 11 HOH HOH . J 5 HOH D 11 411 48 HOH HOH . J 5 HOH D 12 412 17 HOH HOH . J 5 HOH D 13 413 34 HOH HOH . J 5 HOH D 14 414 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GCP . . . E 3 -2.364 39.548 1.779 1 118.9 ? PG GCP 401 B 1 HETATM 2 O O1G GCP . . . E 3 -2.644 40.381 2.989 1 108.53 ? O1G GCP 401 B 1 HETATM 3 O O2G GCP . . . E 3 -3.564 38.652 1.403 1 99.73 ? O2G GCP 401 B 1 HETATM 4 O O3G GCP . . . E 3 -1.146 38.62 1.983 1 106.95 ? O3G GCP 401 B 1 HETATM 5 C C3B GCP . . . E 3 -1.994 40.518 0.313 1 114.19 ? C3B GCP 401 B 1 HETATM 6 P PB GCP . . . E 3 -1.959 39.63 -1.251 1 146.21 ? PB GCP 401 B 1 HETATM 7 O O1B GCP . . . E 3 -1.787 40.573 -2.422 1 117.51 ? O1B GCP 401 B 1 HETATM 8 O O2B GCP . . . E 3 -0.76 38.631 -1.212 1 116.34 ? O2B GCP 401 B 1 HETATM 9 O O3A GCP . . . E 3 -3.289 38.776 -1.332 1 127.12 ? O3A GCP 401 B 1 HETATM 10 P PA GCP . . . E 3 -4.117 38.205 -2.565 1 119.46 ? PA GCP 401 B 1 HETATM 11 O O1A GCP . . . E 3 -3.274 37.361 -3.436 1 108.76 ? O1A GCP 401 B 1 HETATM 12 O O2A GCP . . . E 3 -5.349 37.497 -1.998 1 96.24 ? O2A GCP 401 B 1 HETATM 13 O O5' GCP . . . E 3 -4.643 39.531 -3.337 1 120.02 ? O5' GCP 401 B 1 HETATM 14 C C5' GCP . . . E 3 -4.623 39.61 -4.779 1 109.77 ? C5' GCP 401 B 1 HETATM 15 C C4' GCP . . . E 3 -5.684 40.577 -5.236 1 105.26 ? C4' GCP 401 B 1 HETATM 16 O O4' GCP . . . E 3 -6.111 40.225 -6.572 1 98.91 ? O4' GCP 401 B 1 HETATM 17 C C3' GCP . . . E 3 -6.954 40.604 -4.393 1 101.05 ? C3' GCP 401 B 1 HETATM 18 O O3' GCP . . . E 3 -6.841 41.55 -3.335 1 95.81 ? O3' GCP 401 B 1 HETATM 19 C C2' GCP . . . E 3 -8.013 41.026 -5.412 1 101.63 ? C2' GCP 401 B 1 HETATM 20 O O2' GCP . . . E 3 -8.023 42.438 -5.599 1 101.25 ? O2' GCP 401 B 1 HETATM 21 C C1' GCP . . . E 3 -7.522 40.315 -6.675 1 94.55 ? C1' GCP 401 B 1 HETATM 22 N N9 GCP . . . E 3 -8.067 38.955 -6.827 1 87.71 ? N9 GCP 401 B 1 HETATM 23 C C8 GCP . . . E 3 -7.615 37.741 -6.229 1 89.32 ? C8 GCP 401 B 1 HETATM 24 N N7 GCP . . . E 3 -8.337 36.678 -6.551 1 87.22 ? N7 GCP 401 B 1 HETATM 25 C C5 GCP . . . E 3 -9.369 37.067 -7.416 1 83.59 ? C5 GCP 401 B 1 HETATM 26 C C6 GCP . . . E 3 -10.461 36.454 -8.108 1 80.65 ? C6 GCP 401 B 1 HETATM 27 O O6 GCP . . . E 3 -10.731 35.256 -8.037 1 80.66 ? O6 GCP 401 B 1 HETATM 28 N N1 GCP . . . E 3 -11.191 37.295 -8.843 1 79.05 ? N1 GCP 401 B 1 HETATM 29 C C2 GCP . . . E 3 -10.976 38.657 -8.976 1 83.65 ? C2 GCP 401 B 1 HETATM 30 N N2 GCP . . . E 3 -11.822 39.314 -9.768 1 91.26 ? N2 GCP 401 B 1 HETATM 31 N N3 GCP . . . E 3 -9.988 39.331 -8.37 1 89.36 ? N3 GCP 401 B 1 HETATM 32 C C4 GCP . . . E 3 -9.216 38.542 -7.615 1 87.43 ? C4 GCP 401 B 1 HETATM 33 H HOG2 GCP . . . E 3 -3.977 38.045 2.072 1 119.9 ? HOG2 GCP 401 B 1 HETATM 34 H HOG3 GCP . . . E 3 -0.784 38.373 2.875 1 128.57 ? HOG3 GCP 401 B 1 HETATM 35 H H3B1 GCP . . . E 3 -2.691 41.355 0.295 1 137.26 ? H3B1 GCP 401 B 1 HETATM 36 H H3B2 GCP . . . E 3 -1.065 41.052 0.504 1 137.26 ? H3B2 GCP 401 B 1 HETATM 37 H HOB2 GCP . . . E 3 -0.756 37.669 -0.966 1 139.84 ? HOB2 GCP 401 B 1 HETATM 38 H HOA2 GCP . . . E 3 -6.042 36.964 -2.468 1 115.72 ? HOA2 GCP 401 B 1 HETATM 39 H "H5'2" GCP . . . E 3 -3.641 39.931 -5.123 1 131.95 ? "H5'2" GCP 401 B 1 HETATM 40 H "H5'1" GCP . . . E 3 -4.793 38.625 -5.211 1 131.95 ? "H5'1" GCP 401 B 1 HETATM 41 H H4' GCP . . . E 3 -5.285 41.583 -5.36 1 126.53 ? H4' GCP 401 B 1 HETATM 42 H H3' GCP . . . E 3 -7.172 39.62 -3.979 1 121.49 ? H3' GCP 401 B 1 HETATM 43 H HO3' GCP . . . E 3 -7.498 41.286 -2.638 1 115.2 ? HO3' GCP 401 B 1 HETATM 44 H H2' GCP . . . E 3 -9 40.689 -5.1 1 122.18 ? H2' GCP 401 B 1 HETATM 45 H HO2' GCP . . . E 3 -8.968 42.735 -5.531 1 121.72 ? HO2' GCP 401 B 1 HETATM 46 H H1' GCP . . . E 3 -7.75 40.868 -7.585 1 113.68 ? H1' GCP 401 B 1 HETATM 47 H H8 GCP . . . E 3 -6.752 37.701 -5.567 1 107.41 ? H8 GCP 401 B 1 HETATM 48 H HN1 GCP . . . E 3 -11.966 36.865 -9.338 1 95.08 ? HN1 GCP 401 B 1 HETATM 49 H HN21 GCP . . . E 3 -11.72 40.314 -9.909 1 109.74 ? HN21 GCP 401 B 1 HETATM 50 H HN22 GCP . . . E 3 -12.574 38.819 -10.237 1 109.74 ? HN22 GCP 401 B 1 # _model_server_stats.io_time_ms 127 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 50 #