data_7JJ1 # _model_server_result.job_id 8n1aGoAQ_ci7oNxK76RvAA _model_server_result.datetime_utc '2024-12-11 23:17:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":501}' # _entry.id 7JJ1 # _exptl.entry_id 7JJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JJ1 _cell.length_a 157.682 _cell.length_b 164.755 _cell.length_c 187.683 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,P 1 1 B,I,J,K,Q 2 1 C,L,M,N,O,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 I N N ? 2 L N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id I _struct_conn.ptnr1_label_atom_id FE _struct_conn.ptnr1_label_comp_id HEM _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id HEM _struct_conn.ptnr1_auth_seq_id 501 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id K _struct_conn.ptnr2_label_atom_id N3 _struct_conn.ptnr2_label_comp_id IMD _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id IMD _struct_conn.ptnr2_auth_seq_id 503 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.515 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 190 n n CHA C4D HEM doub 191 n n CHA HHA HEM sing 192 n n CHB C4A HEM sing 193 n n CHB C1B HEM doub 194 n n CHB HHB HEM sing 195 n n CHC C4B HEM sing 196 n n CHC C1C HEM doub 197 n n CHC HHC HEM sing 198 n n CHD C4C HEM doub 199 n n CHD C1D HEM sing 200 n n CHD HHD HEM sing 201 n n C1A C2A HEM doub 202 n y C1A NA HEM sing 203 n y C2A C3A HEM sing 204 n y C2A CAA HEM sing 205 n n C3A C4A HEM doub 206 n y C3A CMA HEM sing 207 n n C4A NA HEM sing 208 n y CMA HMA HEM sing 209 n n CMA HMAA HEM sing 210 n n CMA HMAB HEM sing 211 n n CAA CBA HEM sing 212 n n CAA HAA HEM sing 213 n n CAA HAAA HEM sing 214 n n CBA CGA HEM sing 215 n n CBA HBA HEM sing 216 n n CBA HBAA HEM sing 217 n n CGA O1A HEM doub 218 n n CGA O2A HEM sing 219 n n C1B C2B HEM sing 220 n n C1B NB HEM sing 221 n n C2B C3B HEM doub 222 n n C2B CMB HEM sing 223 n n C3B C4B HEM sing 224 n n C3B CAB HEM sing 225 n n C4B NB HEM doub 226 n n CMB HMB HEM sing 227 n n CMB HMBA HEM sing 228 n n CMB HMBB HEM sing 229 n n CAB CBB HEM doub 230 n n CAB HAB HEM sing 231 n n CBB HBB HEM sing 232 n n CBB HBBA HEM sing 233 n n C1C C2C HEM sing 234 n y C1C NC HEM sing 235 n y C2C C3C HEM doub 236 n y C2C CMC HEM sing 237 n n C3C C4C HEM sing 238 n y C3C CAC HEM sing 239 n n C4C NC HEM sing 240 n y CMC HMC HEM sing 241 n n CMC HMCA HEM sing 242 n n CMC HMCB HEM sing 243 n n CAC CBC HEM doub 244 n n CAC HAC HEM sing 245 n n CBC HBC HEM sing 246 n n CBC HBCA HEM sing 247 n n C1D C2D HEM sing 248 n n C1D ND HEM doub 249 n n C2D C3D HEM doub 250 n n C2D CMD HEM sing 251 n n C3D C4D HEM sing 252 n n C3D CAD HEM sing 253 n n C4D ND HEM sing 254 n n CMD HMD HEM sing 255 n n CMD HMDA HEM sing 256 n n CMD HMDB HEM sing 257 n n CAD CBD HEM sing 258 n n CAD HAD HEM sing 259 n n CAD HADA HEM sing 260 n n CBD CGD HEM sing 261 n n CBD HBD HEM sing 262 n n CBD HBDA HEM sing 263 n n CGD O1D HEM doub 264 n n CGD O2D HEM sing 265 n n O2A H2A HEM sing 266 n n O2D H2D HEM sing 267 n n FE NA HEM sing 268 n n FE NB HEM sing 269 n n FE NC HEM sing 270 n n FE ND HEM sing 271 n n # _atom_sites.entry_id 7JJ1 _atom_sites.fract_transf_matrix[1][1] 0.006342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HEM A 1 501 470 HEM HEM . E 3 16A A 1 502 471 16A 16A . F 4 IMD A 1 503 472 IMD IMD . G 4 IMD A 1 504 473 IMD IMD . H 4 IMD A 1 505 474 IMD IMD . I 2 HEM B 1 501 470 HEM HEM . J 3 16A B 1 502 471 16A 16A . K 4 IMD B 1 503 472 IMD IMD . L 2 HEM C 1 501 470 HEM HEM . M 3 16A C 1 502 471 16A 16A . N 4 IMD C 1 503 472 IMD IMD . O 4 IMD C 1 504 473 IMD IMD . P 5 HOH A 1 601 463 HOH HOH . P 5 HOH A 2 602 457 HOH HOH . P 5 HOH A 3 603 464 HOH HOH . P 5 HOH A 4 604 462 HOH HOH . P 5 HOH A 5 605 458 HOH HOH . P 5 HOH A 6 606 456 HOH HOH . P 5 HOH A 7 607 455 HOH HOH . P 5 HOH A 8 608 466 HOH HOH . P 5 HOH A 9 609 460 HOH HOH . P 5 HOH A 10 610 461 HOH HOH . P 5 HOH A 11 611 469 HOH HOH . P 5 HOH A 12 612 453 HOH HOH . P 5 HOH A 13 613 472 HOH HOH . P 5 HOH A 14 614 459 HOH HOH . P 5 HOH A 15 615 465 HOH HOH . P 5 HOH A 16 616 474 HOH HOH . P 5 HOH A 17 617 454 HOH HOH . P 5 HOH A 18 618 473 HOH HOH . P 5 HOH A 19 619 468 HOH HOH . Q 5 HOH B 1 601 463 HOH HOH . Q 5 HOH B 2 602 462 HOH HOH . Q 5 HOH B 3 603 452 HOH HOH . Q 5 HOH B 4 604 461 HOH HOH . Q 5 HOH B 5 605 458 HOH HOH . Q 5 HOH B 6 606 453 HOH HOH . Q 5 HOH B 7 607 454 HOH HOH . Q 5 HOH B 8 608 473 HOH HOH . Q 5 HOH B 9 609 459 HOH HOH . Q 5 HOH B 10 610 469 HOH HOH . Q 5 HOH B 11 611 452 HOH HOH . Q 5 HOH B 12 612 467 HOH HOH . Q 5 HOH B 13 613 464 HOH HOH . Q 5 HOH B 14 614 455 HOH HOH . R 5 HOH C 1 601 458 HOH HOH . R 5 HOH C 2 602 464 HOH HOH . R 5 HOH C 3 603 454 HOH HOH . R 5 HOH C 4 604 462 HOH HOH . R 5 HOH C 5 605 451 HOH HOH . R 5 HOH C 6 606 460 HOH HOH . R 5 HOH C 7 607 466 HOH HOH . R 5 HOH C 8 608 461 HOH HOH . R 5 HOH C 9 609 463 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . L 2 31.925 -46.953 31.82 1 31.3 ? CHA HEM 501 C 1 HETATM 2 C CHB HEM . . . L 2 29.554 -45.602 35.778 1 20.43 ? CHB HEM 501 C 1 HETATM 3 C CHC HEM . . . L 2 29.646 -41.044 34.272 1 25.5 ? CHC HEM 501 C 1 HETATM 4 C CHD HEM . . . L 2 32.243 -42.365 30.495 1 18.35 ? CHD HEM 501 C 1 HETATM 5 C C1A HEM . . . L 2 31.274 -47.019 33.027 1 29.15 ? C1A HEM 501 C 1 HETATM 6 C C2A HEM . . . L 2 31.031 -48.218 33.826 1 27.55 ? C2A HEM 501 C 1 HETATM 7 C C3A HEM . . . L 2 30.362 -47.843 34.933 1 23.65 ? C3A HEM 501 C 1 HETATM 8 C C4A HEM . . . L 2 30.174 -46.402 34.867 1 30.8 ? C4A HEM 501 C 1 HETATM 9 C CMA HEM . . . L 2 29.877 -48.741 36.075 1 19.62 ? CMA HEM 501 C 1 HETATM 10 C CAA HEM . . . L 2 31.459 -49.628 33.417 1 22.35 ? CAA HEM 501 C 1 HETATM 11 C CBA HEM . . . L 2 30.376 -50.404 32.717 1 19.81 ? CBA HEM 501 C 1 HETATM 12 C CGA HEM . . . L 2 30.795 -51.838 32.44 1 44.12 ? CGA HEM 501 C 1 HETATM 13 O O1A HEM . . . L 2 31.598 -52.328 33.281 1 48.78 ? O1A HEM 501 C 1 HETATM 14 O O2A HEM . . . L 2 30.226 -52.462 31.535 1 30.18 ? O2A HEM 501 C 1 HETATM 15 C C1B HEM . . . L 2 29.368 -44.251 35.723 1 26.97 ? C1B HEM 501 C 1 HETATM 16 C C2B HEM . . . L 2 28.691 -43.469 36.731 1 26.03 ? C2B HEM 501 C 1 HETATM 17 C C3B HEM . . . L 2 28.713 -42.17 36.307 1 30.21 ? C3B HEM 501 C 1 HETATM 18 C C4B HEM . . . L 2 29.399 -42.154 35.044 1 30.24 ? C4B HEM 501 C 1 HETATM 19 C CMB HEM . . . L 2 28.087 -44.052 38.013 1 21.52 ? CMB HEM 501 C 1 HETATM 20 C CAB HEM . . . L 2 28.142 -40.889 36.963 1 21.79 ? CAB HEM 501 C 1 HETATM 21 C CBB HEM . . . L 2 28.449 -40.691 38.454 1 30.98 ? CBB HEM 501 C 1 HETATM 22 C C1C HEM . . . L 2 30.39 -40.999 33.113 1 27.18 ? C1C HEM 501 C 1 HETATM 23 C C2C HEM . . . L 2 30.713 -39.773 32.385 1 33.59 ? C2C HEM 501 C 1 HETATM 24 C C3C HEM . . . L 2 31.442 -40.139 31.318 1 35.92 ? C3C HEM 501 C 1 HETATM 25 C C4C HEM . . . L 2 31.575 -41.581 31.377 1 27.33 ? C4C HEM 501 C 1 HETATM 26 C CMC HEM . . . L 2 30.259 -38.362 32.838 1 21.09 ? CMC HEM 501 C 1 HETATM 27 C CAC HEM . . . L 2 32.063 -39.292 30.189 1 25.54 ? CAC HEM 501 C 1 HETATM 28 C CBC HEM . . . L 2 32.543 -37.892 30.571 1 37.09 ? CBC HEM 501 C 1 HETATM 29 C C1D HEM . . . L 2 32.4 -43.714 30.503 1 26.66 ? C1D HEM 501 C 1 HETATM 30 C C2D HEM . . . L 2 33.125 -44.481 29.526 1 25.36 ? C2D HEM 501 C 1 HETATM 31 C C3D HEM . . . L 2 33.047 -45.79 29.887 1 26.36 ? C3D HEM 501 C 1 HETATM 32 C C4D HEM . . . L 2 32.261 -45.828 31.103 1 34.72 ? C4D HEM 501 C 1 HETATM 33 C CMD HEM . . . L 2 33.848 -43.868 28.308 1 29.4 ? CMD HEM 501 C 1 HETATM 34 C CAD HEM . . . L 2 33.674 -46.98 29.121 1 19.65 ? CAD HEM 501 C 1 HETATM 35 C CBD HEM . . . L 2 34.885 -47.63 29.842 1 33.95 ? CBD HEM 501 C 1 HETATM 36 C CGD HEM . . . L 2 35.468 -48.775 29.039 1 40.4 ? CGD HEM 501 C 1 HETATM 37 O O1D HEM . . . L 2 36.681 -48.758 28.712 1 29.57 ? O1D HEM 501 C 1 HETATM 38 O O2D HEM . . . L 2 34.606 -49.56 28.578 1 22.75 ? O2D HEM 501 C 1 HETATM 39 N NA HEM . . . L 2 30.741 -45.964 33.697 1 29.36 ? NA HEM 501 C 1 HETATM 40 N NB HEM . . . L 2 29.78 -43.416 34.715 1 31.94 ? NB HEM 501 C 1 HETATM 41 N NC HEM . . . L 2 30.928 -42.069 32.467 1 33.23 ? NC HEM 501 C 1 HETATM 42 N ND HEM . . . L 2 31.877 -44.556 31.46 1 31.66 ? ND HEM 501 C 1 HETATM 43 FE FE HEM . . . L 2 30.78 -44.016 33.068 1 23.42 ? FE HEM 501 C 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 425 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #