data_7JJG # _model_server_result.job_id OHC8Vne4afCloh3t8ATVBA _model_server_result.datetime_utc '2024-12-22 03:27:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jjg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1701}' # _entry.id 7JJG # _exptl.entry_id 7JJG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.505 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{4-[(3R)-3-methylmorpholin-4-yl]-6-[1-(methylsulfonyl)cyclopropyl]pyrimidin-2-yl}-1H-indole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JJG _cell.length_a 46.74 _cell.length_b 57.47 _cell.length_c 59.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JJG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H24 N4 O3 S' _chem_comp.formula_weight 412.505 _chem_comp.id VCD _chem_comp.mon_nstd_flag . _chem_comp.name 4-{4-[(3R)-3-methylmorpholin-4-yl]-6-[1-(methylsulfonyl)cyclopropyl]pyrimidin-2-yl}-1H-indole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O10 VCD sing 398 n n C11 C12 VCD sing 399 n n C09 O10 VCD sing 400 n n C09 C08 VCD sing 401 n n C29 C28 VCD sing 402 n n C29 C23 VCD sing 403 n n C12 N07 VCD sing 404 n n N07 C06 VCD sing 405 n n N07 C08 VCD sing 406 n n C06 C01 VCD doub 407 n y C06 N05 VCD sing 408 n y C01 C02 VCD sing 409 n y C08 C13 VCD sing 410 n n C20 C21 VCD doub 411 n y C20 C19 VCD sing 412 n y C21 N22 VCD sing 413 n y C28 C23 VCD sing 414 n n N05 C04 VCD doub 415 n y C02 C23 VCD sing 416 n n C02 N03 VCD doub 417 n y C23 S24 VCD sing 418 n n C04 N03 VCD sing 419 n y C04 C14 VCD sing 420 n n C19 C14 VCD doub 421 n y C19 C18 VCD sing 422 n y N22 C18 VCD sing 423 n y C25 S24 VCD sing 424 n n C14 C15 VCD sing 425 n y C18 C17 VCD doub 426 n y S24 O27 VCD doub 427 n n S24 O26 VCD doub 428 n n C15 C16 VCD doub 429 n y C17 C16 VCD sing 430 n y C11 H111 VCD sing 431 n n C11 H112 VCD sing 432 n n C01 H011 VCD sing 433 n n C08 H081 VCD sing 434 n n C09 H091 VCD sing 435 n n C09 H092 VCD sing 436 n n C12 H121 VCD sing 437 n n C12 H122 VCD sing 438 n n C13 H133 VCD sing 439 n n C13 H131 VCD sing 440 n n C13 H132 VCD sing 441 n n C15 H151 VCD sing 442 n n C16 H161 VCD sing 443 n n C17 H171 VCD sing 444 n n C20 H201 VCD sing 445 n n C21 H211 VCD sing 446 n n C25 H252 VCD sing 447 n n C25 H253 VCD sing 448 n n C25 H251 VCD sing 449 n n C28 H281 VCD sing 450 n n C28 H282 VCD sing 451 n n C29 H291 VCD sing 452 n n C29 H292 VCD sing 453 n n N22 H221 VCD sing 454 n n # _atom_sites.entry_id 7JJG _atom_sites.fract_transf_matrix[1][1] 0.021395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VCD A 1 1701 1 VCD AZ0 . C 3 EDO A 1 1702 1 EDO EDO . D 4 GOL A 1 1703 1 GOL GOL . E 5 HOH A 1 1801 70 HOH HOH . E 5 HOH A 2 1802 77 HOH HOH . E 5 HOH A 3 1803 176 HOH HOH . E 5 HOH A 4 1804 24 HOH HOH . E 5 HOH A 5 1805 32 HOH HOH . E 5 HOH A 6 1806 26 HOH HOH . E 5 HOH A 7 1807 99 HOH HOH . E 5 HOH A 8 1808 85 HOH HOH . E 5 HOH A 9 1809 135 HOH HOH . E 5 HOH A 10 1810 157 HOH HOH . E 5 HOH A 11 1811 183 HOH HOH . E 5 HOH A 12 1812 5 HOH HOH . E 5 HOH A 13 1813 76 HOH HOH . E 5 HOH A 14 1814 93 HOH HOH . E 5 HOH A 15 1815 86 HOH HOH . E 5 HOH A 16 1816 54 HOH HOH . E 5 HOH A 17 1817 170 HOH HOH . E 5 HOH A 18 1818 46 HOH HOH . E 5 HOH A 19 1819 25 HOH HOH . E 5 HOH A 20 1820 14 HOH HOH . E 5 HOH A 21 1821 106 HOH HOH . E 5 HOH A 22 1822 57 HOH HOH . E 5 HOH A 23 1823 59 HOH HOH . E 5 HOH A 24 1824 113 HOH HOH . E 5 HOH A 25 1825 36 HOH HOH . E 5 HOH A 26 1826 100 HOH HOH . E 5 HOH A 27 1827 1 HOH HOH . E 5 HOH A 28 1828 126 HOH HOH . E 5 HOH A 29 1829 96 HOH HOH . E 5 HOH A 30 1830 40 HOH HOH . E 5 HOH A 31 1831 37 HOH HOH . E 5 HOH A 32 1832 41 HOH HOH . E 5 HOH A 33 1833 11 HOH HOH . E 5 HOH A 34 1834 8 HOH HOH . E 5 HOH A 35 1835 145 HOH HOH . E 5 HOH A 36 1836 13 HOH HOH . E 5 HOH A 37 1837 30 HOH HOH . E 5 HOH A 38 1838 4 HOH HOH . E 5 HOH A 39 1839 80 HOH HOH . E 5 HOH A 40 1840 90 HOH HOH . E 5 HOH A 41 1841 67 HOH HOH . E 5 HOH A 42 1842 56 HOH HOH . E 5 HOH A 43 1843 50 HOH HOH . E 5 HOH A 44 1844 31 HOH HOH . E 5 HOH A 45 1845 178 HOH HOH . E 5 HOH A 46 1846 3 HOH HOH . E 5 HOH A 47 1847 73 HOH HOH . E 5 HOH A 48 1848 35 HOH HOH . E 5 HOH A 49 1849 23 HOH HOH . E 5 HOH A 50 1850 7 HOH HOH . E 5 HOH A 51 1851 78 HOH HOH . E 5 HOH A 52 1852 27 HOH HOH . E 5 HOH A 53 1853 43 HOH HOH . E 5 HOH A 54 1854 15 HOH HOH . E 5 HOH A 55 1855 10 HOH HOH . E 5 HOH A 56 1856 154 HOH HOH . E 5 HOH A 57 1857 61 HOH HOH . E 5 HOH A 58 1858 144 HOH HOH . E 5 HOH A 59 1859 171 HOH HOH . E 5 HOH A 60 1860 12 HOH HOH . E 5 HOH A 61 1861 114 HOH HOH . E 5 HOH A 62 1862 158 HOH HOH . E 5 HOH A 63 1863 97 HOH HOH . E 5 HOH A 64 1864 53 HOH HOH . E 5 HOH A 65 1865 29 HOH HOH . E 5 HOH A 66 1866 45 HOH HOH . E 5 HOH A 67 1867 2 HOH HOH . E 5 HOH A 68 1868 71 HOH HOH . E 5 HOH A 69 1869 94 HOH HOH . E 5 HOH A 70 1870 19 HOH HOH . E 5 HOH A 71 1871 18 HOH HOH . E 5 HOH A 72 1872 39 HOH HOH . E 5 HOH A 73 1873 17 HOH HOH . E 5 HOH A 74 1874 48 HOH HOH . E 5 HOH A 75 1875 87 HOH HOH . E 5 HOH A 76 1876 81 HOH HOH . E 5 HOH A 77 1877 21 HOH HOH . E 5 HOH A 78 1878 49 HOH HOH . E 5 HOH A 79 1879 98 HOH HOH . E 5 HOH A 80 1880 66 HOH HOH . E 5 HOH A 81 1881 129 HOH HOH . E 5 HOH A 82 1882 84 HOH HOH . E 5 HOH A 83 1883 174 HOH HOH . E 5 HOH A 84 1884 38 HOH HOH . E 5 HOH A 85 1885 9 HOH HOH . E 5 HOH A 86 1886 131 HOH HOH . E 5 HOH A 87 1887 108 HOH HOH . E 5 HOH A 88 1888 79 HOH HOH . E 5 HOH A 89 1889 172 HOH HOH . E 5 HOH A 90 1890 34 HOH HOH . E 5 HOH A 91 1891 111 HOH HOH . E 5 HOH A 92 1892 28 HOH HOH . E 5 HOH A 93 1893 20 HOH HOH . E 5 HOH A 94 1894 60 HOH HOH . E 5 HOH A 95 1895 143 HOH HOH . E 5 HOH A 96 1896 173 HOH HOH . E 5 HOH A 97 1897 182 HOH HOH . E 5 HOH A 98 1898 164 HOH HOH . E 5 HOH A 99 1899 52 HOH HOH . E 5 HOH A 100 1900 22 HOH HOH . E 5 HOH A 101 1901 16 HOH HOH . E 5 HOH A 102 1902 64 HOH HOH . E 5 HOH A 103 1903 44 HOH HOH . E 5 HOH A 104 1904 168 HOH HOH . E 5 HOH A 105 1905 103 HOH HOH . E 5 HOH A 106 1906 83 HOH HOH . E 5 HOH A 107 1907 62 HOH HOH . E 5 HOH A 108 1908 112 HOH HOH . E 5 HOH A 109 1909 110 HOH HOH . E 5 HOH A 110 1910 107 HOH HOH . E 5 HOH A 111 1911 68 HOH HOH . E 5 HOH A 112 1912 139 HOH HOH . E 5 HOH A 113 1913 117 HOH HOH . E 5 HOH A 114 1914 119 HOH HOH . E 5 HOH A 115 1915 116 HOH HOH . E 5 HOH A 116 1916 151 HOH HOH . E 5 HOH A 117 1917 101 HOH HOH . E 5 HOH A 118 1918 132 HOH HOH . E 5 HOH A 119 1919 72 HOH HOH . E 5 HOH A 120 1920 6 HOH HOH . E 5 HOH A 121 1921 161 HOH HOH . E 5 HOH A 122 1922 122 HOH HOH . E 5 HOH A 123 1923 130 HOH HOH . E 5 HOH A 124 1924 128 HOH HOH . E 5 HOH A 125 1925 69 HOH HOH . E 5 HOH A 126 1926 146 HOH HOH . E 5 HOH A 127 1927 152 HOH HOH . E 5 HOH A 128 1928 148 HOH HOH . E 5 HOH A 129 1929 47 HOH HOH . E 5 HOH A 130 1930 51 HOH HOH . E 5 HOH A 131 1931 155 HOH HOH . E 5 HOH A 132 1932 63 HOH HOH . E 5 HOH A 133 1933 127 HOH HOH . E 5 HOH A 134 1934 134 HOH HOH . E 5 HOH A 135 1935 121 HOH HOH . E 5 HOH A 136 1936 179 HOH HOH . E 5 HOH A 137 1937 75 HOH HOH . E 5 HOH A 138 1938 118 HOH HOH . E 5 HOH A 139 1939 137 HOH HOH . E 5 HOH A 140 1940 140 HOH HOH . E 5 HOH A 141 1941 65 HOH HOH . E 5 HOH A 142 1942 150 HOH HOH . E 5 HOH A 143 1943 104 HOH HOH . E 5 HOH A 144 1944 92 HOH HOH . E 5 HOH A 145 1945 115 HOH HOH . E 5 HOH A 146 1946 42 HOH HOH . E 5 HOH A 147 1947 82 HOH HOH . E 5 HOH A 148 1948 55 HOH HOH . E 5 HOH A 149 1949 33 HOH HOH . E 5 HOH A 150 1950 120 HOH HOH . E 5 HOH A 151 1951 95 HOH HOH . E 5 HOH A 152 1952 91 HOH HOH . E 5 HOH A 153 1953 74 HOH HOH . E 5 HOH A 154 1954 105 HOH HOH . E 5 HOH A 155 1955 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 VCD . . . B 2 15.352 19.094 64.352 1 14.57 ? C11 VCD 1701 A 1 HETATM 2 C C01 VCD . . . B 2 19.099 17.359 65.766 1 14.48 ? C01 VCD 1701 A 1 HETATM 3 C C02 VCD . . . B 2 20.327 16.881 66.223 1 15.34 ? C02 VCD 1701 A 1 HETATM 4 C C04 VCD . . . B 2 21.027 19.13 66.639 1 14.6 ? C04 VCD 1701 A 1 HETATM 5 C C06 VCD . . . B 2 18.85 18.75 65.739 1 13.09 ? C06 VCD 1701 A 1 HETATM 6 C C08 VCD . . . B 2 17.315 20.68 65.781 1 14.7 ? C08 VCD 1701 A 1 HETATM 7 C C09 VCD . . . B 2 16.211 21.27 64.864 1 17.48 ? C09 VCD 1701 A 1 HETATM 8 C C12 VCD . . . B 2 16.533 18.414 65.086 1 14.62 ? C12 VCD 1701 A 1 HETATM 9 C C13 VCD . . . B 2 16.869 20.707 67.274 1 17.29 ? C13 VCD 1701 A 1 HETATM 10 C C14 VCD . . . B 2 21.993 20.032 67.14 1 13.41 ? C14 VCD 1701 A 1 HETATM 11 C C15 VCD . . . B 2 22.866 19.58 68.165 1 17.43 ? C15 VCD 1701 A 1 HETATM 12 C C16 VCD . . . B 2 23.828 20.436 68.731 1 17.47 ? C16 VCD 1701 A 1 HETATM 13 C C17 VCD . . . B 2 23.952 21.768 68.309 1 16.14 ? C17 VCD 1701 A 1 HETATM 14 C C18 VCD . . . B 2 23.082 22.231 67.315 1 15.59 ? C18 VCD 1701 A 1 HETATM 15 C C19 VCD . . . B 2 22.118 21.39 66.739 1 14.23 ? C19 VCD 1701 A 1 HETATM 16 C C20 VCD . . . B 2 21.448 22.174 65.795 1 15.77 ? C20 VCD 1701 A 1 HETATM 17 C C21 VCD . . . B 2 22.024 23.445 65.844 1 16.9 ? C21 VCD 1701 A 1 HETATM 18 C C23 VCD . . . B 2 20.621 15.445 66.248 1 14.45 ? C23 VCD 1701 A 1 HETATM 19 C C25 VCD . . . B 2 23.416 15.61 66.944 1 16.35 ? C25 VCD 1701 A 1 HETATM 20 C C28 VCD . . . B 2 19.52 14.397 66.051 1 16.38 ? C28 VCD 1701 A 1 HETATM 21 C C29 VCD . . . B 2 20.566 14.631 64.955 1 15.05 ? C29 VCD 1701 A 1 HETATM 22 N N03 VCD . . . B 2 21.235 17.787 66.655 1 15.22 ? N03 VCD 1701 A 1 HETATM 23 N N05 VCD . . . B 2 19.82 19.576 66.209 1 15.09 ? N05 VCD 1701 A 1 HETATM 24 N N07 VCD . . . B 2 17.651 19.32 65.327 1 12.76 ? N07 VCD 1701 A 1 HETATM 25 N N22 VCD . . . B 2 23.01 23.45 66.757 1 19.05 ? N22 VCD 1701 A 1 HETATM 26 O O10 VCD . . . B 2 15.076 20.401 64.87 1 16.87 ? O10 VCD 1701 A 1 HETATM 27 O O26 VCD . . . B 2 21.466 15.653 68.84 1 16.15 ? O26 VCD 1701 A 1 HETATM 28 O O27 VCD . . . B 2 21.84 13.383 67.51 1 17.4 ? O27 VCD 1701 A 1 HETATM 29 S S24 VCD . . . B 2 21.826 14.944 67.506 1 16.24 ? S24 VCD 1701 A 1 HETATM 30 H H111 VCD . . . B 2 15.572 19.171 63.41 1 17.49 ? H111 VCD 1701 A 1 HETATM 31 H H112 VCD . . . B 2 14.56 18.543 64.455 1 17.49 ? H112 VCD 1701 A 1 HETATM 32 H H011 VCD . . . B 2 18.445 16.763 65.479 1 17.37 ? H011 VCD 1701 A 1 HETATM 33 H H081 VCD . . . B 2 18.07 21.287 65.74 1 17.63 ? H081 VCD 1701 A 1 HETATM 34 H H091 VCD . . . B 2 15.952 22.146 65.191 1 20.98 ? H091 VCD 1701 A 1 HETATM 35 H H092 VCD . . . B 2 16.552 21.354 63.96 1 20.98 ? H092 VCD 1701 A 1 HETATM 36 H H121 VCD . . . B 2 16.844 17.665 64.554 1 17.55 ? H121 VCD 1701 A 1 HETATM 37 H H122 VCD . . . B 2 16.218 18.071 65.937 1 17.55 ? H122 VCD 1701 A 1 HETATM 38 H H133 VCD . . . B 2 16.096 20.132 67.391 1 20.75 ? H133 VCD 1701 A 1 HETATM 39 H H131 VCD . . . B 2 16.639 21.614 67.527 1 20.75 ? H131 VCD 1701 A 1 HETATM 40 H H132 VCD . . . B 2 17.595 20.39 67.834 1 20.75 ? H132 VCD 1701 A 1 HETATM 41 H H151 VCD . . . B 2 22.801 18.703 68.467 1 20.92 ? H151 VCD 1701 A 1 HETATM 42 H H161 VCD . . . B 2 24.391 20.114 69.397 1 20.97 ? H161 VCD 1701 A 1 HETATM 43 H H171 VCD . . . B 2 24.595 22.328 68.68 1 19.37 ? H171 VCD 1701 A 1 HETATM 44 H H201 VCD . . . B 2 20.753 21.901 65.24 1 18.92 ? H201 VCD 1701 A 1 HETATM 45 H H211 VCD . . . B 2 21.766 24.173 65.327 1 20.28 ? H211 VCD 1701 A 1 HETATM 46 H H252 VCD . . . B 2 23.86 14.957 66.381 1 19.62 ? H252 VCD 1701 A 1 HETATM 47 H H253 VCD . . . B 2 23.974 15.806 67.713 1 19.62 ? H253 VCD 1701 A 1 HETATM 48 H H251 VCD . . . B 2 23.266 16.424 66.438 1 19.62 ? H251 VCD 1701 A 1 HETATM 49 H H281 VCD . . . B 2 19.624 13.579 66.562 1 19.66 ? H281 VCD 1701 A 1 HETATM 50 H H282 VCD . . . B 2 18.635 14.748 65.867 1 19.66 ? H282 VCD 1701 A 1 HETATM 51 H H291 VCD . . . B 2 20.252 15.109 64.172 1 18.06 ? H291 VCD 1701 A 1 HETATM 52 H H292 VCD . . . B 2 21.241 13.94 64.866 1 18.06 ? H292 VCD 1701 A 1 HETATM 53 H H221 VCD . . . B 2 23.511 24.121 66.952 1 22.86 ? H221 VCD 1701 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 84 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 1328 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 53 #