data_7JJQ # _model_server_result.job_id 7TICuzyg_aYQXlj4qcQPCQ _model_server_result.datetime_utc '2024-11-14 06:50:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jjq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 7JJQ # _exptl.entry_id 7JJQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JJQ _cell.length_a 53.338 _cell.length_b 53.338 _cell.length_c 190.647 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JJQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 E FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc2 E FE HEM . A HEM 201 1_555 M O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc4 G FE HEM . B HEM 201 1_555 H N7 K7M . B K7M 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc5 G FE HEM . B HEM 201 1_555 H O1 K7M . B K7M 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc6 C NE2 HIS 87 C HIS 87 1_555 I FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc7 I FE HEM . C HEM 201 1_555 O O HOH . C HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc8 D NE2 HIS 92 D HIS 92 1_555 K FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc9 K FE HEM . D HEM 201 1_555 L O1 K7M . D K7M 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc10 K FE HEM . D HEM 201 1_555 L N7 K7M . D K7M 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 7JJQ _atom_sites.fract_transf_matrix[1][1] 0.018748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 201 201 HEM HEM . F 4 GOL A 1 202 202 GOL GOL . G 3 HEM B 1 201 201 HEM HEM . H 5 K7M B 1 202 202 K7M K7M . I 3 HEM C 1 201 201 HEM HEM . J 5 K7M C 1 202 202 K7M K7M . K 3 HEM D 1 201 201 HEM HEM . L 5 K7M D 1 202 202 K7M K7M . M 6 HOH A 1 301 301 HOH HOH . M 6 HOH A 2 302 302 HOH HOH . M 6 HOH A 3 303 303 HOH HOH . M 6 HOH A 4 304 304 HOH HOH . M 6 HOH A 5 305 305 HOH HOH . M 6 HOH A 6 306 306 HOH HOH . M 6 HOH A 7 307 307 HOH HOH . M 6 HOH A 8 308 308 HOH HOH . M 6 HOH A 9 309 309 HOH HOH . M 6 HOH A 10 310 310 HOH HOH . M 6 HOH A 11 311 311 HOH HOH . M 6 HOH A 12 312 312 HOH HOH . M 6 HOH A 13 313 313 HOH HOH . M 6 HOH A 14 314 314 HOH HOH . M 6 HOH A 15 315 315 HOH HOH . M 6 HOH A 16 316 316 HOH HOH . M 6 HOH A 17 317 317 HOH HOH . M 6 HOH A 18 318 318 HOH HOH . M 6 HOH A 19 319 319 HOH HOH . M 6 HOH A 20 320 320 HOH HOH . M 6 HOH A 21 321 321 HOH HOH . M 6 HOH A 22 322 322 HOH HOH . M 6 HOH A 23 323 323 HOH HOH . M 6 HOH A 24 324 324 HOH HOH . M 6 HOH A 25 325 325 HOH HOH . M 6 HOH A 26 326 326 HOH HOH . M 6 HOH A 27 327 327 HOH HOH . M 6 HOH A 28 328 328 HOH HOH . M 6 HOH A 29 329 329 HOH HOH . M 6 HOH A 30 330 330 HOH HOH . M 6 HOH A 31 331 331 HOH HOH . N 6 HOH B 1 301 301 HOH HOH . N 6 HOH B 2 302 302 HOH HOH . N 6 HOH B 3 303 303 HOH HOH . N 6 HOH B 4 304 304 HOH HOH . N 6 HOH B 5 305 305 HOH HOH . N 6 HOH B 6 306 306 HOH HOH . N 6 HOH B 7 307 307 HOH HOH . N 6 HOH B 8 308 308 HOH HOH . N 6 HOH B 9 309 309 HOH HOH . N 6 HOH B 10 310 310 HOH HOH . N 6 HOH B 11 311 311 HOH HOH . N 6 HOH B 12 312 312 HOH HOH . O 6 HOH C 1 301 301 HOH HOH . O 6 HOH C 2 302 302 HOH HOH . O 6 HOH C 3 303 303 HOH HOH . O 6 HOH C 4 304 304 HOH HOH . O 6 HOH C 5 305 305 HOH HOH . O 6 HOH C 6 306 306 HOH HOH . O 6 HOH C 7 307 307 HOH HOH . O 6 HOH C 8 308 308 HOH HOH . O 6 HOH C 9 309 309 HOH HOH . O 6 HOH C 10 310 310 HOH HOH . O 6 HOH C 11 311 311 HOH HOH . O 6 HOH C 12 312 312 HOH HOH . O 6 HOH C 13 313 313 HOH HOH . O 6 HOH C 14 314 314 HOH HOH . O 6 HOH C 15 315 315 HOH HOH . O 6 HOH C 16 316 316 HOH HOH . O 6 HOH C 17 317 317 HOH HOH . O 6 HOH C 18 318 318 HOH HOH . O 6 HOH C 19 319 319 HOH HOH . O 6 HOH C 20 320 320 HOH HOH . O 6 HOH C 21 321 321 HOH HOH . O 6 HOH C 22 322 322 HOH HOH . O 6 HOH C 23 323 323 HOH HOH . O 6 HOH C 24 324 324 HOH HOH . O 6 HOH C 25 325 325 HOH HOH . O 6 HOH C 26 326 326 HOH HOH . O 6 HOH C 27 327 327 HOH HOH . O 6 HOH C 28 328 328 HOH HOH . O 6 HOH C 29 329 329 HOH HOH . O 6 HOH C 30 330 330 HOH HOH . P 6 HOH D 1 301 301 HOH HOH . P 6 HOH D 2 302 302 HOH HOH . P 6 HOH D 3 303 303 HOH HOH . P 6 HOH D 4 304 304 HOH HOH . P 6 HOH D 5 305 305 HOH HOH . P 6 HOH D 6 306 306 HOH HOH . P 6 HOH D 7 307 307 HOH HOH . P 6 HOH D 8 308 308 HOH HOH . P 6 HOH D 9 309 309 HOH HOH . P 6 HOH D 10 310 310 HOH HOH . P 6 HOH D 11 311 311 HOH HOH . P 6 HOH D 12 312 312 HOH HOH . P 6 HOH D 13 313 313 HOH HOH . P 6 HOH D 14 314 314 HOH HOH . P 6 HOH D 15 315 315 HOH HOH . P 6 HOH D 16 316 316 HOH HOH . P 6 HOH D 17 317 317 HOH HOH . P 6 HOH D 18 318 318 HOH HOH . P 6 HOH D 19 319 319 HOH HOH . P 6 HOH D 20 320 320 HOH HOH . P 6 HOH D 21 321 321 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . I 3 16.148 -27.752 -16.836 1 19.99 ? CHA HEM 201 C 1 HETATM 2 C CHB HEM . . . I 3 14.118 -32.083 -15.987 1 19.63 ? CHB HEM 201 C 1 HETATM 3 C CHC HEM . . . I 3 10.904 -29.863 -13.051 1 18.31 ? CHC HEM 201 C 1 HETATM 4 C CHD HEM . . . I 3 12.477 -25.544 -14.548 1 19.71 ? CHD HEM 201 C 1 HETATM 5 C C1A HEM . . . I 3 15.885 -29.099 -16.812 1 19.92 ? C1A HEM 201 C 1 HETATM 6 C C2A HEM . . . I 3 16.545 -30.021 -17.613 1 21.05 ? C2A HEM 201 C 1 HETATM 7 C C3A HEM . . . I 3 15.986 -31.234 -17.382 1 21.33 ? C3A HEM 201 C 1 HETATM 8 C C4A HEM . . . I 3 14.951 -31.08 -16.451 1 19.62 ? C4A HEM 201 C 1 HETATM 9 C CMA HEM . . . I 3 16.377 -32.549 -18.016 1 20.21 ? CMA HEM 201 C 1 HETATM 10 C CAA HEM . . . I 3 17.683 -29.732 -18.561 1 24.05 ? CAA HEM 201 C 1 HETATM 11 C CBA HEM . . . I 3 19.006 -30.206 -17.981 1 28.3 ? CBA HEM 201 C 1 HETATM 12 C CGA HEM . . . I 3 20.136 -29.923 -18.957 1 31.03 ? CGA HEM 201 C 1 HETATM 13 O O1A HEM . . . I 3 19.951 -29.891 -20.206 1 31.15 ? O1A HEM 201 C 1 HETATM 14 O O2A HEM . . . I 3 21.274 -29.735 -18.482 1 33.35 ? O2A HEM 201 C 1 HETATM 15 C C1B HEM . . . I 3 13.034 -31.837 -15.104 1 18.84 ? C1B HEM 201 C 1 HETATM 16 C C2B HEM . . . I 3 12.202 -32.86 -14.568 1 19.44 ? C2B HEM 201 C 1 HETATM 17 C C3B HEM . . . I 3 11.29 -32.265 -13.716 1 18.67 ? C3B HEM 201 C 1 HETATM 18 C C4B HEM . . . I 3 11.612 -30.819 -13.768 1 19.17 ? C4B HEM 201 C 1 HETATM 19 C CMB HEM . . . I 3 12.338 -34.346 -14.854 1 19.44 ? CMB HEM 201 C 1 HETATM 20 C CAB HEM . . . I 3 10.147 -32.828 -12.959 1 18.11 ? CAB HEM 201 C 1 HETATM 21 C CBB HEM . . . I 3 9.593 -34.022 -13.215 1 19.29 ? CBB HEM 201 C 1 HETATM 22 C C1C HEM . . . I 3 11.054 -28.506 -13.189 1 19.32 ? C1C HEM 201 C 1 HETATM 23 C C2C HEM . . . I 3 10.143 -27.548 -12.709 1 19.78 ? C2C HEM 201 C 1 HETATM 24 C C3C HEM . . . I 3 10.582 -26.309 -13.129 1 21.35 ? C3C HEM 201 C 1 HETATM 25 C C4C HEM . . . I 3 11.745 -26.513 -13.931 1 20.62 ? C4C HEM 201 C 1 HETATM 26 C CMC HEM . . . I 3 8.92 -27.793 -11.863 1 19.55 ? CMC HEM 201 C 1 HETATM 27 C CAC HEM . . . I 3 9.808 -25.102 -12.8 1 24.76 ? CAC HEM 201 C 1 HETATM 28 C CBC HEM . . . I 3 9.879 -23.96 -13.449 1 27.32 ? CBC HEM 201 C 1 HETATM 29 C C1D HEM . . . I 3 13.615 -25.847 -15.302 1 19.74 ? C1D HEM 201 C 1 HETATM 30 C C2D HEM . . . I 3 14.435 -24.778 -15.908 1 19.56 ? C2D HEM 201 C 1 HETATM 31 C C3D HEM . . . I 3 15.457 -25.378 -16.553 1 20.3 ? C3D HEM 201 C 1 HETATM 32 C C4D HEM . . . I 3 15.269 -26.818 -16.294 1 20.31 ? C4D HEM 201 C 1 HETATM 33 C CMD HEM . . . I 3 14.163 -23.286 -15.884 1 18.45 ? CMD HEM 201 C 1 HETATM 34 C CAD HEM . . . I 3 16.581 -24.686 -17.351 1 20.31 ? CAD HEM 201 C 1 HETATM 35 C CBD HEM . . . I 3 16.21 -24.581 -18.824 1 20.83 ? CBD HEM 201 C 1 HETATM 36 C CGD HEM . . . I 3 17.075 -23.657 -19.684 1 22.86 ? CGD HEM 201 C 1 HETATM 37 O O1D HEM . . . I 3 17.266 -23.907 -20.872 1 23.19 ? O1D HEM 201 C 1 HETATM 38 O O2D HEM . . . I 3 17.571 -22.59 -19.306 1 26.31 ? O2D HEM 201 C 1 HETATM 39 N NA HEM . . . I 3 14.88 -29.743 -16.142 1 20.42 ? NA HEM 201 C 1 HETATM 40 N NB HEM . . . I 3 12.665 -30.656 -14.577 1 19.03 ? NB HEM 201 C 1 HETATM 41 N NC HEM . . . I 3 11.992 -27.876 -13.935 1 19.14 ? NC HEM 201 C 1 HETATM 42 N ND HEM . . . I 3 14.146 -27.048 -15.567 1 19.92 ? ND HEM 201 C 1 HETATM 43 FE FE HEM . . . I 3 13.505 -28.77 -15.04 1 18.56 ? FE HEM 201 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #