data_7JK6 # _model_server_result.job_id E5DU1oFw1Wur58JcLmSKfQ _model_server_result.datetime_utc '2024-11-14 19:00:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":901}' # _entry.id 7JK6 # _exptl.entry_id 7JK6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JK6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 I N N ? 7 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 66 D THR 63 1_555 H MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 G O1G ATP . D ATP 901 1_555 H MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc3 G O2B ATP . D ATP 901 1_555 H MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc4 B OG1 THR 48 E THR 48 1_555 J MG MG . E MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc5 I O3G ATP . E ATP 901 1_555 J MG MG . E MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc6 I O2B ATP . E ATP 901 1_555 J MG MG . E MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc7 C OG1 THR 169 A THR 605 1_555 L MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc8 K O3G ATP . A ATP 1001 1_555 L MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc9 K O2B ATP . A ATP 1001 1_555 L MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7JK6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 ATP D 1 901 901 ATP ATP . H 8 MG D 1 902 902 MG MG . I 7 ATP E 1 901 901 ATP ATP . J 8 MG E 1 902 902 MG MG . K 7 ATP A 1 1001 1001 ATP ATP . L 8 MG A 1 1002 1002 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 7 121.527 153.957 121.376 1 189.59 ? PG ATP 901 D 1 HETATM 2 O O1G ATP . . . G 7 121.445 154.77 122.642 1 189.59 ? O1G ATP 901 D 1 HETATM 3 O O2G ATP . . . G 7 120.28 153.158 121.11 1 189.59 ? O2G ATP 901 D 1 HETATM 4 O O3G ATP . . . G 7 122.819 153.207 121.168 1 189.59 ? O3G ATP 901 D 1 HETATM 5 P PB ATP . . . G 7 122.247 156.452 120.462 1 189.59 ? PB ATP 901 D 1 HETATM 6 O O1B ATP . . . G 7 121.181 157.387 120.955 1 189.59 ? O1B ATP 901 D 1 HETATM 7 O O2B ATP . . . G 7 123.496 156.236 121.276 1 189.59 ? O2B ATP 901 D 1 HETATM 8 O O3B ATP . . . G 7 121.545 155.04 120.197 1 189.59 ? O3B ATP 901 D 1 HETATM 9 P PA ATP . . . G 7 123.658 158.167 118.813 1 189.59 ? PA ATP 901 D 1 HETATM 10 O O1A ATP . . . G 7 122.953 159.417 119.246 1 189.59 ? O1A ATP 901 D 1 HETATM 11 O O2A ATP . . . G 7 124.997 157.831 119.407 1 189.59 ? O2A ATP 901 D 1 HETATM 12 O O3A ATP . . . G 7 122.643 156.943 118.993 1 189.59 ? O3A ATP 901 D 1 HETATM 13 O O5' ATP . . . G 7 123.829 158.246 117.23 1 189.59 ? O5' ATP 901 D 1 HETATM 14 C C5' ATP . . . G 7 124.69 157.353 116.542 1 189.59 ? C5' ATP 901 D 1 HETATM 15 C C4' ATP . . . G 7 125.153 158.106 115.313 1 189.59 ? C4' ATP 901 D 1 HETATM 16 O O4' ATP . . . G 7 124.013 158.668 114.677 1 189.59 ? O4' ATP 901 D 1 HETATM 17 C C3' ATP . . . G 7 126.035 159.259 115.729 1 189.59 ? C3' ATP 901 D 1 HETATM 18 O O3' ATP . . . G 7 127.259 159.183 115.001 1 189.59 ? O3' ATP 901 D 1 HETATM 19 C C2' ATP . . . G 7 125.297 160.517 115.343 1 189.59 ? C2' ATP 901 D 1 HETATM 20 O O2' ATP . . . G 7 126.195 161.397 114.671 1 189.59 ? O2' ATP 901 D 1 HETATM 21 C C1' ATP . . . G 7 124.208 160.051 114.399 1 189.59 ? C1' ATP 901 D 1 HETATM 22 N N9 ATP . . . G 7 122.91 160.742 114.584 1 189.59 ? N9 ATP 901 D 1 HETATM 23 C C8 ATP . . . G 7 121.742 160.107 114.761 1 189.59 ? C8 ATP 901 D 1 HETATM 24 N N7 ATP . . . G 7 120.714 160.977 114.88 1 189.59 ? N7 ATP 901 D 1 HETATM 25 C C5 ATP . . . G 7 121.227 162.209 114.766 1 189.59 ? C5 ATP 901 D 1 HETATM 26 C C6 ATP . . . G 7 120.688 163.58 114.797 1 189.59 ? C6 ATP 901 D 1 HETATM 27 N N6 ATP . . . G 7 119.371 163.81 114.975 1 189.59 ? N6 ATP 901 D 1 HETATM 28 N N1 ATP . . . G 7 121.55 164.598 114.639 1 189.59 ? N1 ATP 901 D 1 HETATM 29 C C2 ATP . . . G 7 122.861 164.387 114.46 1 189.59 ? C2 ATP 901 D 1 HETATM 30 N N3 ATP . . . G 7 123.418 163.169 114.417 1 189.59 ? N3 ATP 901 D 1 HETATM 31 C C4 ATP . . . G 7 122.67 162.054 114.56 1 189.59 ? C4 ATP 901 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #