data_7JK7 # _model_server_result.job_id uGB8Irm_O4Vpa8Fy9ds3dQ _model_server_result.datetime_utc '2024-12-12 23:35:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jk7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 7JK7 # _exptl.entry_id 7JK7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JK7 _cell.length_a 98.32 _cell.length_b 78.63 _cell.length_c 89.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7JK7 _atom_sites.fract_transf_matrix[1][1] 0.010171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL B 1 601 501 GOL GOL . D 3 GOL B 1 602 601 GOL GOL . E 3 GOL B 1 603 701 GOL GOL . F 3 GOL B 1 604 801 GOL GOL . G 4 HOH A 1 201 126 HOH HOH . G 4 HOH A 2 202 128 HOH HOH . G 4 HOH A 3 203 130 HOH HOH . G 4 HOH A 4 204 142 HOH HOH . H 4 HOH B 1 701 148 HOH HOH . H 4 HOH B 2 702 129 HOH HOH . H 4 HOH B 3 703 51 HOH HOH . H 4 HOH B 4 704 71 HOH HOH . H 4 HOH B 5 705 136 HOH HOH . H 4 HOH B 6 706 56 HOH HOH . H 4 HOH B 7 707 30 HOH HOH . H 4 HOH B 8 708 90 HOH HOH . H 4 HOH B 9 709 88 HOH HOH . H 4 HOH B 10 710 21 HOH HOH . H 4 HOH B 11 711 143 HOH HOH . H 4 HOH B 12 712 84 HOH HOH . H 4 HOH B 13 713 81 HOH HOH . H 4 HOH B 14 714 112 HOH HOH . H 4 HOH B 15 715 29 HOH HOH . H 4 HOH B 16 716 100 HOH HOH . H 4 HOH B 17 717 38 HOH HOH . H 4 HOH B 18 718 14 HOH HOH . H 4 HOH B 19 719 48 HOH HOH . H 4 HOH B 20 720 95 HOH HOH . H 4 HOH B 21 721 5 HOH HOH . H 4 HOH B 22 722 43 HOH HOH . H 4 HOH B 23 723 60 HOH HOH . H 4 HOH B 24 724 102 HOH HOH . H 4 HOH B 25 725 35 HOH HOH . H 4 HOH B 26 726 96 HOH HOH . H 4 HOH B 27 727 36 HOH HOH . H 4 HOH B 28 728 52 HOH HOH . H 4 HOH B 29 729 86 HOH HOH . H 4 HOH B 30 730 92 HOH HOH . H 4 HOH B 31 731 22 HOH HOH . H 4 HOH B 32 732 74 HOH HOH . H 4 HOH B 33 733 72 HOH HOH . H 4 HOH B 34 734 7 HOH HOH . H 4 HOH B 35 735 73 HOH HOH . H 4 HOH B 36 736 37 HOH HOH . H 4 HOH B 37 737 108 HOH HOH . H 4 HOH B 38 738 34 HOH HOH . H 4 HOH B 39 739 1 HOH HOH . H 4 HOH B 40 740 9 HOH HOH . H 4 HOH B 41 741 99 HOH HOH . H 4 HOH B 42 742 45 HOH HOH . H 4 HOH B 43 743 32 HOH HOH . H 4 HOH B 44 744 97 HOH HOH . H 4 HOH B 45 745 69 HOH HOH . H 4 HOH B 46 746 145 HOH HOH . H 4 HOH B 47 747 3 HOH HOH . H 4 HOH B 48 748 82 HOH HOH . H 4 HOH B 49 749 42 HOH HOH . H 4 HOH B 50 750 8 HOH HOH . H 4 HOH B 51 751 33 HOH HOH . H 4 HOH B 52 752 134 HOH HOH . H 4 HOH B 53 753 141 HOH HOH . H 4 HOH B 54 754 40 HOH HOH . H 4 HOH B 55 755 16 HOH HOH . H 4 HOH B 56 756 75 HOH HOH . H 4 HOH B 57 757 107 HOH HOH . H 4 HOH B 58 758 117 HOH HOH . H 4 HOH B 59 759 50 HOH HOH . H 4 HOH B 60 760 44 HOH HOH . H 4 HOH B 61 761 63 HOH HOH . H 4 HOH B 62 762 4 HOH HOH . H 4 HOH B 63 763 101 HOH HOH . H 4 HOH B 64 764 149 HOH HOH . H 4 HOH B 65 765 47 HOH HOH . H 4 HOH B 66 766 11 HOH HOH . H 4 HOH B 67 767 93 HOH HOH . H 4 HOH B 68 768 20 HOH HOH . H 4 HOH B 69 769 94 HOH HOH . H 4 HOH B 70 770 2 HOH HOH . H 4 HOH B 71 771 85 HOH HOH . H 4 HOH B 72 772 135 HOH HOH . H 4 HOH B 73 773 17 HOH HOH . H 4 HOH B 74 774 23 HOH HOH . H 4 HOH B 75 775 49 HOH HOH . H 4 HOH B 76 776 121 HOH HOH . H 4 HOH B 77 777 12 HOH HOH . H 4 HOH B 78 778 152 HOH HOH . H 4 HOH B 79 779 98 HOH HOH . H 4 HOH B 80 780 146 HOH HOH . H 4 HOH B 81 781 78 HOH HOH . H 4 HOH B 82 782 61 HOH HOH . H 4 HOH B 83 783 10 HOH HOH . H 4 HOH B 84 784 6 HOH HOH . H 4 HOH B 85 785 113 HOH HOH . H 4 HOH B 86 786 122 HOH HOH . H 4 HOH B 87 787 13 HOH HOH . H 4 HOH B 88 788 53 HOH HOH . H 4 HOH B 89 789 65 HOH HOH . H 4 HOH B 90 790 67 HOH HOH . H 4 HOH B 91 791 115 HOH HOH . H 4 HOH B 92 792 55 HOH HOH . H 4 HOH B 93 793 25 HOH HOH . H 4 HOH B 94 794 68 HOH HOH . H 4 HOH B 95 795 19 HOH HOH . H 4 HOH B 96 796 91 HOH HOH . H 4 HOH B 97 797 151 HOH HOH . H 4 HOH B 98 798 62 HOH HOH . H 4 HOH B 99 799 27 HOH HOH . H 4 HOH B 100 800 103 HOH HOH . H 4 HOH B 101 801 87 HOH HOH . H 4 HOH B 102 802 111 HOH HOH . H 4 HOH B 103 803 79 HOH HOH . H 4 HOH B 104 804 89 HOH HOH . H 4 HOH B 105 805 15 HOH HOH . H 4 HOH B 106 806 77 HOH HOH . H 4 HOH B 107 807 133 HOH HOH . H 4 HOH B 108 808 83 HOH HOH . H 4 HOH B 109 809 110 HOH HOH . H 4 HOH B 110 810 114 HOH HOH . H 4 HOH B 111 811 137 HOH HOH . H 4 HOH B 112 812 66 HOH HOH . H 4 HOH B 113 813 31 HOH HOH . H 4 HOH B 114 814 70 HOH HOH . H 4 HOH B 115 815 147 HOH HOH . H 4 HOH B 116 816 153 HOH HOH . H 4 HOH B 117 817 26 HOH HOH . H 4 HOH B 118 818 64 HOH HOH . H 4 HOH B 119 819 41 HOH HOH . H 4 HOH B 120 820 18 HOH HOH . H 4 HOH B 121 821 24 HOH HOH . H 4 HOH B 122 822 46 HOH HOH . H 4 HOH B 123 823 127 HOH HOH . H 4 HOH B 124 824 138 HOH HOH . H 4 HOH B 125 825 120 HOH HOH . H 4 HOH B 126 826 58 HOH HOH . H 4 HOH B 127 827 106 HOH HOH . H 4 HOH B 128 828 105 HOH HOH . H 4 HOH B 129 829 109 HOH HOH . H 4 HOH B 130 830 59 HOH HOH . H 4 HOH B 131 831 144 HOH HOH . H 4 HOH B 132 832 76 HOH HOH . H 4 HOH B 133 833 57 HOH HOH . H 4 HOH B 134 834 132 HOH HOH . H 4 HOH B 135 835 140 HOH HOH . H 4 HOH B 136 836 104 HOH HOH . H 4 HOH B 137 837 118 HOH HOH . H 4 HOH B 138 838 119 HOH HOH . H 4 HOH B 139 839 131 HOH HOH . H 4 HOH B 140 840 54 HOH HOH . H 4 HOH B 141 841 39 HOH HOH . H 4 HOH B 142 842 123 HOH HOH . H 4 HOH B 143 843 116 HOH HOH . H 4 HOH B 144 844 125 HOH HOH . H 4 HOH B 145 845 80 HOH HOH . H 4 HOH B 146 846 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 22.544 13.704 -5.608 1 67.93 ? C1 GOL 604 B 1 HETATM 2 O O1 GOL . . . F 3 23.165 12.475 -5.415 1 69.2 ? O1 GOL 604 B 1 HETATM 3 C C2 GOL . . . F 3 23.434 14.486 -6.601 1 79.07 ? C2 GOL 604 B 1 HETATM 4 O O2 GOL . . . F 3 22.772 15.584 -7.177 1 82.35 ? O2 GOL 604 B 1 HETATM 5 C C3 GOL . . . F 3 24.652 14.9 -5.747 1 78.43 ? C3 GOL 604 B 1 HETATM 6 O O3 GOL . . . F 3 24.963 13.799 -4.94 1 76.55 ? O3 GOL 604 B 1 HETATM 7 H H11 GOL . . . F 3 22.444 14.213 -4.788 1 81.52 ? H11 GOL 604 B 1 HETATM 8 H H12 GOL . . . F 3 21.65 13.603 -5.971 1 81.52 ? H12 GOL 604 B 1 HETATM 9 H HO1 GOL . . . F 3 23.415 12.455 -4.603 1 83.04 ? HO1 GOL 604 B 1 HETATM 10 H H2 GOL . . . F 3 23.704 13.918 -7.34 1 94.89 ? H2 GOL 604 B 1 HETATM 11 H HO2 GOL . . . F 3 22.476 15.341 -7.936 1 98.82 ? HO2 GOL 604 B 1 HETATM 12 H H31 GOL . . . F 3 24.438 15.706 -5.25 1 94.11 ? H31 GOL 604 B 1 HETATM 13 H H32 GOL . . . F 3 25.389 15.145 -6.328 1 94.11 ? H32 GOL 604 B 1 HETATM 14 H HO3 GOL . . . F 3 25.531 13.335 -5.368 1 91.86 ? HO3 GOL 604 B 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #