data_7JK9 # _model_server_result.job_id 9Kwx4U_KPR_nqzafgBT7DQ _model_server_result.datetime_utc '2024-10-11 00:25:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"VE","auth_seq_id":501}' # _entry.id 7JK9 # _exptl.entry_id 7JK9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 40 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 40-meric _pdbx_struct_assembly.oligomeric_count 40 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE,LE,ME,NE,OE,PE,QE,RE,SE,TE,UE,VE,WE,XE,YE,ZE,AF,BF,CF,DF _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 OA N N ? 2 RA N N ? 2 UA N N ? 2 XA N N ? 2 AB N N ? 2 DB N N ? 2 GB N N ? 2 JB N N ? 2 MB N N ? 2 PB N N ? 2 SB N N ? 2 VB N N ? 2 YB N N ? 2 BC N N ? 2 EC N N ? 2 HC N N ? 2 KC N N ? 2 NC N N ? 2 QC N N ? 2 TC N N ? 2 WC N N ? 2 ZC N N ? 2 CD N N ? 2 FD N N ? 2 ID N N ? 2 LD N N ? 2 OD N N ? 2 RD N N ? 2 UD N N ? 2 XD N N ? 2 AE N N ? 2 DE N N ? 2 GE N N ? 2 JE N N ? 2 ME N N ? 2 PE N N ? 2 SE N N ? 2 VE N N ? 2 YE N N ? 2 BF N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 376 n n PA O2A NDP sing 377 n n PA O5B NDP sing 378 n n PA O3 NDP sing 379 n n O2A HOA2 NDP sing 380 n n O5B C5B NDP sing 381 n n C5B C4B NDP sing 382 n n C5B H51A NDP sing 383 n n C5B H52A NDP sing 384 n n C4B O4B NDP sing 385 n n C4B C3B NDP sing 386 n n C4B H4B NDP sing 387 n n O4B C1B NDP sing 388 n n C3B O3B NDP sing 389 n n C3B C2B NDP sing 390 n n C3B H3B NDP sing 391 n n O3B HO3A NDP sing 392 n n C2B O2B NDP sing 393 n n C2B C1B NDP sing 394 n n C2B H2B NDP sing 395 n n O2B P2B NDP sing 396 n n C1B N9A NDP sing 397 n n C1B H1B NDP sing 398 n n N9A C8A NDP sing 399 n y N9A C4A NDP sing 400 n y C8A N7A NDP doub 401 n y C8A H8A NDP sing 402 n n N7A C5A NDP sing 403 n y C5A C6A NDP sing 404 n y C5A C4A NDP doub 405 n y C6A N6A NDP sing 406 n n C6A N1A NDP doub 407 n y N6A H61A NDP sing 408 n n N6A H62A NDP sing 409 n n N1A C2A NDP sing 410 n y C2A N3A NDP doub 411 n y C2A H2A NDP sing 412 n n N3A C4A NDP sing 413 n y O3 PN NDP sing 414 n n PN O1N NDP doub 415 n n PN O2N NDP sing 416 n n PN O5D NDP sing 417 n n O2N H21N NDP sing 418 n n O5D C5D NDP sing 419 n n C5D C4D NDP sing 420 n n C5D H51N NDP sing 421 n n C5D H52N NDP sing 422 n n C4D O4D NDP sing 423 n n C4D C3D NDP sing 424 n n C4D H4D NDP sing 425 n n O4D C1D NDP sing 426 n n C3D O3D NDP sing 427 n n C3D C2D NDP sing 428 n n C3D H3D NDP sing 429 n n O3D HO3N NDP sing 430 n n C2D O2D NDP sing 431 n n C2D C1D NDP sing 432 n n C2D H2D NDP sing 433 n n O2D HO2N NDP sing 434 n n C1D N1N NDP sing 435 n n C1D H1D NDP sing 436 n n N1N C2N NDP sing 437 n n N1N C6N NDP sing 438 n n C2N C3N NDP doub 439 n n C2N H2N NDP sing 440 n n C3N C7N NDP sing 441 n n C3N C4N NDP sing 442 n n C7N O7N NDP doub 443 n n C7N N7N NDP sing 444 n n N7N H71N NDP sing 445 n n N7N H72N NDP sing 446 n n C4N C5N NDP sing 447 n n C4N H41N NDP sing 448 n n C4N H42N NDP sing 449 n n C5N C6N NDP doub 450 n n C5N H5N NDP sing 451 n n C6N H6N NDP sing 452 n n P2B O1X NDP doub 453 n n P2B O2X NDP sing 454 n n P2B O3X NDP sing 455 n n O2X HOP2 NDP sing 456 n n O3X HOP3 NDP sing 457 n n # _atom_sites.entry_id 7JK9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code OA 2 NDP A 1 501 500 NDP NDP . PA 3 PMR A 1 502 600 PMR PMR . QA 4 LMG A 1 503 700 LMG LMG . RA 2 NDP B 1 501 500 NDP NDP . SA 3 PMR B 1 502 600 PMR PMR . TA 4 LMG B 1 503 700 LMG LMG . UA 2 NDP C 1 501 500 NDP NDP . VA 3 PMR C 1 502 600 PMR PMR . WA 4 LMG C 1 503 700 LMG LMG . XA 2 NDP D 1 501 500 NDP NDP . YA 3 PMR D 1 502 600 PMR PMR . ZA 4 LMG D 1 503 700 LMG LMG . AB 2 NDP E 1 501 500 NDP NDP . BB 3 PMR E 1 502 600 PMR PMR . CB 4 LMG E 1 503 700 LMG LMG . DB 2 NDP F 1 501 500 NDP NDP . EB 3 PMR F 1 502 600 PMR PMR . FB 4 LMG F 1 503 700 LMG LMG . GB 2 NDP G 1 501 500 NDP NDP . HB 3 PMR G 1 502 600 PMR PMR . IB 4 LMG G 1 503 700 LMG LMG . JB 2 NDP H 1 501 500 NDP NDP . KB 3 PMR H 1 502 600 PMR PMR . LB 4 LMG H 1 503 700 LMG LMG . MB 2 NDP I 1 501 500 NDP NDP . NB 3 PMR I 1 502 600 PMR PMR . OB 4 LMG I 1 503 700 LMG LMG . PB 2 NDP J 1 501 500 NDP NDP . QB 3 PMR J 1 502 600 PMR PMR . RB 4 LMG J 1 503 700 LMG LMG . SB 2 NDP K 1 501 500 NDP NDP . TB 3 PMR K 1 502 600 PMR PMR . UB 4 LMG K 1 503 700 LMG LMG . VB 2 NDP L 1 501 500 NDP NDP . WB 3 PMR L 1 502 600 PMR PMR . XB 4 LMG L 1 503 700 LMG LMG . YB 2 NDP M 1 501 500 NDP NDP . ZB 3 PMR M 1 502 600 PMR PMR . AC 4 LMG M 1 503 700 LMG LMG . BC 2 NDP N 1 501 500 NDP NDP . CC 3 PMR N 1 502 600 PMR PMR . DC 4 LMG N 1 503 700 LMG LMG . EC 2 NDP O 1 501 500 NDP NDP . FC 3 PMR O 1 502 600 PMR PMR . GC 4 LMG O 1 503 700 LMG LMG . HC 2 NDP P 1 501 500 NDP NDP . IC 3 PMR P 1 502 600 PMR PMR . JC 4 LMG P 1 503 700 LMG LMG . KC 2 NDP Q 1 501 500 NDP NDP . LC 3 PMR Q 1 502 600 PMR PMR . MC 4 LMG Q 1 503 700 LMG LMG . NC 2 NDP R 1 501 500 NDP NDP . OC 3 PMR R 1 502 600 PMR PMR . PC 4 LMG R 1 503 700 LMG LMG . QC 2 NDP S 1 501 500 NDP NDP . RC 3 PMR S 1 502 600 PMR PMR . SC 4 LMG S 1 503 700 LMG LMG . TC 2 NDP T 1 501 500 NDP NDP . UC 3 PMR T 1 502 600 PMR PMR . VC 4 LMG T 1 503 700 LMG LMG . WC 2 NDP V 1 501 500 NDP NDP . XC 3 PMR V 1 502 600 PMR PMR . YC 4 LMG V 1 503 700 LMG LMG . ZC 2 NDP W 1 501 500 NDP NDP . AD 3 PMR W 1 502 600 PMR PMR . BD 4 LMG W 1 503 700 LMG LMG . CD 2 NDP X 1 501 500 NDP NDP . DD 3 PMR X 1 502 600 PMR PMR . ED 4 LMG X 1 503 700 LMG LMG . FD 2 NDP Y 1 501 500 NDP NDP . GD 3 PMR Y 1 502 600 PMR PMR . HD 4 LMG Y 1 503 700 LMG LMG . ID 2 NDP Z 1 501 500 NDP NDP . JD 3 PMR Z 1 502 600 PMR PMR . KD 4 LMG Z 1 503 700 LMG LMG . LD 2 NDP AA 1 501 500 NDP NDP . MD 3 PMR AA 1 502 600 PMR PMR . ND 4 LMG AA 1 503 700 LMG LMG . OD 2 NDP BA 1 501 500 NDP NDP . PD 3 PMR BA 1 502 600 PMR PMR . QD 4 LMG BA 1 503 700 LMG LMG . RD 2 NDP CA 1 501 500 NDP NDP . SD 3 PMR CA 1 502 600 PMR PMR . TD 4 LMG CA 1 503 700 LMG LMG . UD 2 NDP DA 1 501 500 NDP NDP . VD 3 PMR DA 1 502 600 PMR PMR . WD 4 LMG DA 1 503 700 LMG LMG . XD 2 NDP EA 1 501 500 NDP NDP . YD 3 PMR EA 1 502 600 PMR PMR . ZD 4 LMG EA 1 503 700 LMG LMG . AE 2 NDP FA 1 501 500 NDP NDP . BE 3 PMR FA 1 502 600 PMR PMR . CE 4 LMG FA 1 503 700 LMG LMG . DE 2 NDP GA 1 501 500 NDP NDP . EE 3 PMR GA 1 502 600 PMR PMR . FE 4 LMG GA 1 503 700 LMG LMG . GE 2 NDP HA 1 501 500 NDP NDP . HE 3 PMR HA 1 502 600 PMR PMR . IE 4 LMG HA 1 503 700 LMG LMG . JE 2 NDP IA 1 501 500 NDP NDP . KE 3 PMR IA 1 502 600 PMR PMR . LE 4 LMG IA 1 503 700 LMG LMG . ME 2 NDP JA 1 501 500 NDP NDP . NE 3 PMR JA 1 502 600 PMR PMR . OE 4 LMG JA 1 503 700 LMG LMG . PE 2 NDP KA 1 501 500 NDP NDP . QE 3 PMR KA 1 502 600 PMR PMR . RE 4 LMG KA 1 503 700 LMG LMG . SE 2 NDP LA 1 501 500 NDP NDP . TE 3 PMR LA 1 502 600 PMR PMR . UE 4 LMG LA 1 503 700 LMG LMG . VE 2 NDP MA 1 501 500 NDP NDP . WE 3 PMR MA 1 502 600 PMR PMR . XE 4 LMG MA 1 503 700 LMG LMG . YE 2 NDP NA 1 501 500 NDP NDP . ZE 3 PMR NA 1 502 600 PMR PMR . AF 4 LMG NA 1 503 700 LMG LMG . BF 2 NDP OA 1 501 500 NDP NDP . CF 3 PMR OA 1 502 600 PMR PMR . DF 4 LMG OA 1 503 700 LMG LMG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . VE 2 135.889 201.416 183.454 1 41.51 ? PA NDP 501 MA 1 HETATM 2 O O1A NDP . . . VE 2 135.963 202.882 183.584 1 41.51 -1 O1A NDP 501 MA 1 HETATM 3 O O2A NDP . . . VE 2 136.721 201.041 182.138 1 41.51 ? O2A NDP 501 MA 1 HETATM 4 O O5B NDP . . . VE 2 134.343 201.038 183.25 1 41.51 ? O5B NDP 501 MA 1 HETATM 5 C C5B NDP . . . VE 2 133.657 202.276 183.418 1 41.51 ? C5B NDP 501 MA 1 HETATM 6 C C4B NDP . . . VE 2 132.402 202.31 182.553 1 41.51 ? C4B NDP 501 MA 1 HETATM 7 O O4B NDP . . . VE 2 131.715 203.536 182.811 1 41.51 ? O4B NDP 501 MA 1 HETATM 8 C C3B NDP . . . VE 2 132.77 202.321 181.06 1 41.51 ? C3B NDP 501 MA 1 HETATM 9 O O3B NDP . . . VE 2 131.933 201.43 180.338 1 41.51 ? O3B NDP 501 MA 1 HETATM 10 C C2B NDP . . . VE 2 132.429 203.75 180.6 1 41.51 ? C2B NDP 501 MA 1 HETATM 11 O O2B NDP . . . VE 2 131.947 203.783 179.257 1 41.51 ? O2B NDP 501 MA 1 HETATM 12 C C1B NDP . . . VE 2 131.25 204.016 181.543 1 41.51 ? C1B NDP 501 MA 1 HETATM 13 N N9A NDP . . . VE 2 131.04 205.445 181.564 1 41.51 ? N9A NDP 501 MA 1 HETATM 14 C C8A NDP . . . VE 2 131.948 206.402 181.876 1 41.51 ? C8A NDP 501 MA 1 HETATM 15 N N7A NDP . . . VE 2 131.393 207.572 181.774 1 41.51 ? N7A NDP 501 MA 1 HETATM 16 C C5A NDP . . . VE 2 130.11 207.416 181.386 1 41.51 ? C5A NDP 501 MA 1 HETATM 17 C C6A NDP . . . VE 2 129.051 208.281 181.116 1 41.51 ? C6A NDP 501 MA 1 HETATM 18 N N6A NDP . . . VE 2 129.212 209.65 181.234 1 41.51 ? N6A NDP 501 MA 1 HETATM 19 N N1A NDP . . . VE 2 127.901 207.741 180.74 1 41.51 ? N1A NDP 501 MA 1 HETATM 20 C C2A NDP . . . VE 2 127.727 206.443 180.627 1 41.51 ? C2A NDP 501 MA 1 HETATM 21 N N3A NDP . . . VE 2 128.689 205.597 180.866 1 41.51 ? N3A NDP 501 MA 1 HETATM 22 C C4A NDP . . . VE 2 129.872 206.046 181.242 1 41.51 ? C4A NDP 501 MA 1 HETATM 23 O O3 NDP . . . VE 2 136.571 200.689 184.724 1 41.51 ? O3 NDP 501 MA 1 HETATM 24 P PN NDP . . . VE 2 135.536 199.884 185.67 1 41.51 ? PN NDP 501 MA 1 HETATM 25 O O1N NDP . . . VE 2 136.306 199.185 186.716 1 41.51 -1 O1N NDP 501 MA 1 HETATM 26 O O2N NDP . . . VE 2 134.724 198.775 184.842 1 41.51 ? O2N NDP 501 MA 1 HETATM 27 O O5D NDP . . . VE 2 134.509 200.87 186.415 1 41.51 ? O5D NDP 501 MA 1 HETATM 28 C C5D NDP . . . VE 2 133.412 200.043 186.803 1 41.51 ? C5D NDP 501 MA 1 HETATM 29 C C4D NDP . . . VE 2 133.233 200.019 188.326 1 41.51 ? C4D NDP 501 MA 1 HETATM 30 O O4D NDP . . . VE 2 134.231 199.178 188.946 1 41.51 ? O4D NDP 501 MA 1 HETATM 31 C C3D NDP . . . VE 2 133.432 201.413 188.955 1 41.51 ? C3D NDP 501 MA 1 HETATM 32 O O3D NDP . . . VE 2 132.163 201.962 189.308 1 41.51 ? O3D NDP 501 MA 1 HETATM 33 C C2D NDP . . . VE 2 134.265 201.134 190.225 1 41.51 ? C2D NDP 501 MA 1 HETATM 34 O O2D NDP . . . VE 2 133.638 201.707 191.371 1 41.51 ? O2D NDP 501 MA 1 HETATM 35 C C1D NDP . . . VE 2 134.251 199.597 190.323 1 41.51 ? C1D NDP 501 MA 1 HETATM 36 N N1N NDP . . . VE 2 135.452 199.108 191 1 41.51 ? N1N NDP 501 MA 1 HETATM 37 C C2N NDP . . . VE 2 136.519 198.679 190.265 1 41.51 ? C2N NDP 501 MA 1 HETATM 38 C C3N NDP . . . VE 2 137.743 198.611 190.815 1 41.51 ? C3N NDP 501 MA 1 HETATM 39 C C7N NDP . . . VE 2 138.865 198.585 189.959 1 41.51 ? C7N NDP 501 MA 1 HETATM 40 O O7N NDP . . . VE 2 138.709 198.675 188.758 1 41.51 ? O7N NDP 501 MA 1 HETATM 41 N N7N NDP . . . VE 2 140.104 198.466 190.472 1 41.51 ? N7N NDP 501 MA 1 HETATM 42 C C4N NDP . . . VE 2 137.951 198.896 192.274 1 41.51 ? C4N NDP 501 MA 1 HETATM 43 C C5N NDP . . . VE 2 136.649 198.948 193.012 1 41.51 ? C5N NDP 501 MA 1 HETATM 44 C C6N NDP . . . VE 2 135.502 199.073 192.385 1 41.51 ? C6N NDP 501 MA 1 HETATM 45 P P2B NDP . . . VE 2 133.233 203.626 178.315 1 41.51 ? P2B NDP 501 MA 1 HETATM 46 O O1X NDP . . . VE 2 133.436 202.191 178.04 1 41.51 ? O1X NDP 501 MA 1 HETATM 47 O O2X NDP . . . VE 2 133.026 204.416 176.929 1 41.51 -1 O2X NDP 501 MA 1 HETATM 48 O O3X NDP . . . VE 2 134.506 204.189 179.107 1 41.51 ? O3X NDP 501 MA 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 224 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #