data_7JK9 # _model_server_result.job_id h5kFmKU5xyELrF4Z6fxrFw _model_server_result.datetime_utc '2024-10-11 00:32:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KB","auth_seq_id":502}' # _entry.id 7JK9 # _exptl.entry_id 7JK9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 612.957 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Protochlorophyllide _entity.pdbx_number_of_molecules 40 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 40-meric _pdbx_struct_assembly.oligomeric_count 40 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE,LE,ME,NE,OE,PE,QE,RE,SE,TE,UE,VE,WE,XE,YE,ZE,AF,BF,CF,DF _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 PA N N ? 3 SA N N ? 3 VA N N ? 3 YA N N ? 3 BB N N ? 3 EB N N ? 3 HB N N ? 3 KB N N ? 3 NB N N ? 3 QB N N ? 3 TB N N ? 3 WB N N ? 3 ZB N N ? 3 CC N N ? 3 FC N N ? 3 IC N N ? 3 LC N N ? 3 OC N N ? 3 RC N N ? 3 UC N N ? 3 XC N N ? 3 AD N N ? 3 DD N N ? 3 GD N N ? 3 JD N N ? 3 MD N N ? 3 PD N N ? 3 SD N N ? 3 VD N N ? 3 YD N N ? 3 BE N N ? 3 EE N N ? 3 HE N N ? 3 KE N N ? 3 NE N N ? 3 QE N N ? 3 TE N N ? 3 WE N N ? 3 ZE N N ? 3 CF N N # _chem_comp.formula 'C35 H32 Mg N4 O5 2' _chem_comp.formula_weight 612.957 _chem_comp.id PMR _chem_comp.mon_nstd_flag . _chem_comp.name Protochlorophyllide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NB PMR sing 481 n n MG NC PMR sing 482 n n MG ND PMR sing 483 n n MG NA PMR sing 484 n n CBB CAB PMR doub 485 n n CAB C3B PMR sing 486 n n C3B C2B PMR doub 487 n n C3B C4B PMR sing 488 n n C2B CMB PMR sing 489 n n C2B C1B PMR sing 490 n n C1B CHB PMR doub 491 n n C1B NB PMR sing 492 n n CHB C4A PMR sing 493 n n NB C4B PMR sing 494 n n C4B CHC PMR doub 495 n n CHC C1C PMR sing 496 n n C1C NC PMR doub 497 n n C1C C2C PMR sing 498 n n NC C4C PMR sing 499 n n C2C CMC PMR sing 500 n n C2C C3C PMR doub 501 n n C3C CAC PMR sing 502 n n C3C C4C PMR sing 503 n n CAC CBC PMR sing 504 n n C4C CHD PMR doub 505 n n CHD C1D PMR sing 506 n n C1D C2D PMR doub 507 n y C1D ND PMR sing 508 n y C2D CMD PMR sing 509 n n C2D C3D PMR sing 510 n y ND C4D PMR sing 511 n y C4D C3D PMR doub 512 n y C4D CHA PMR sing 513 n n C3D CAD PMR sing 514 n n CAD OAD PMR doub 515 n n CAD CBD PMR sing 516 n n CBD CGD PMR sing 517 n n CBD CHA PMR sing 518 n n CGD O1D PMR doub 519 n n CGD O2D PMR sing 520 n n O2D C2O PMR sing 521 n n CHA C1A PMR doub 522 n n C1A NA PMR sing 523 n n C1A C2A PMR sing 524 n n NA C4A PMR doub 525 n n C4A C3A PMR sing 526 n n C3A CMA PMR sing 527 n n C3A C2A PMR doub 528 n n C2A CAA PMR sing 529 n n CAA CBA PMR sing 530 n n CBA CGA PMR sing 531 n n CGA O1A PMR doub 532 n n CGA O2A PMR sing 533 n n CBB HBB PMR sing 534 n n CBB HBBA PMR sing 535 n n CAB HAB PMR sing 536 n n CMB HMB PMR sing 537 n n CMB HMBA PMR sing 538 n n CMB HMBB PMR sing 539 n n CHB HHB PMR sing 540 n n CHC HHC PMR sing 541 n n CMC HMC PMR sing 542 n n CMC HMCA PMR sing 543 n n CMC HMCB PMR sing 544 n n CAC HAC PMR sing 545 n n CAC HACA PMR sing 546 n n CBC HBC PMR sing 547 n n CBC HBCA PMR sing 548 n n CBC HBCB PMR sing 549 n n CHD HHD PMR sing 550 n n CMD HMD PMR sing 551 n n CMD HMDA PMR sing 552 n n CMD HMDB PMR sing 553 n n CBD HBD PMR sing 554 n n C2O H2O PMR sing 555 n n C2O H2OA PMR sing 556 n n C2O H2OB PMR sing 557 n n CMA HMA PMR sing 558 n n CMA HMAA PMR sing 559 n n CMA HMAB PMR sing 560 n n CAA HAA PMR sing 561 n n CAA HAAA PMR sing 562 n n CBA HBA PMR sing 563 n n CBA HBAA PMR sing 564 n n O2A HO2A PMR sing 565 n n # _atom_sites.entry_id 7JK9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code OA 2 NDP A 1 501 500 NDP NDP . PA 3 PMR A 1 502 600 PMR PMR . QA 4 LMG A 1 503 700 LMG LMG . RA 2 NDP B 1 501 500 NDP NDP . SA 3 PMR B 1 502 600 PMR PMR . TA 4 LMG B 1 503 700 LMG LMG . UA 2 NDP C 1 501 500 NDP NDP . VA 3 PMR C 1 502 600 PMR PMR . WA 4 LMG C 1 503 700 LMG LMG . XA 2 NDP D 1 501 500 NDP NDP . YA 3 PMR D 1 502 600 PMR PMR . ZA 4 LMG D 1 503 700 LMG LMG . AB 2 NDP E 1 501 500 NDP NDP . BB 3 PMR E 1 502 600 PMR PMR . CB 4 LMG E 1 503 700 LMG LMG . DB 2 NDP F 1 501 500 NDP NDP . EB 3 PMR F 1 502 600 PMR PMR . FB 4 LMG F 1 503 700 LMG LMG . GB 2 NDP G 1 501 500 NDP NDP . HB 3 PMR G 1 502 600 PMR PMR . IB 4 LMG G 1 503 700 LMG LMG . JB 2 NDP H 1 501 500 NDP NDP . KB 3 PMR H 1 502 600 PMR PMR . LB 4 LMG H 1 503 700 LMG LMG . MB 2 NDP I 1 501 500 NDP NDP . NB 3 PMR I 1 502 600 PMR PMR . OB 4 LMG I 1 503 700 LMG LMG . PB 2 NDP J 1 501 500 NDP NDP . QB 3 PMR J 1 502 600 PMR PMR . RB 4 LMG J 1 503 700 LMG LMG . SB 2 NDP K 1 501 500 NDP NDP . TB 3 PMR K 1 502 600 PMR PMR . UB 4 LMG K 1 503 700 LMG LMG . VB 2 NDP L 1 501 500 NDP NDP . WB 3 PMR L 1 502 600 PMR PMR . XB 4 LMG L 1 503 700 LMG LMG . YB 2 NDP M 1 501 500 NDP NDP . ZB 3 PMR M 1 502 600 PMR PMR . AC 4 LMG M 1 503 700 LMG LMG . BC 2 NDP N 1 501 500 NDP NDP . CC 3 PMR N 1 502 600 PMR PMR . DC 4 LMG N 1 503 700 LMG LMG . EC 2 NDP O 1 501 500 NDP NDP . FC 3 PMR O 1 502 600 PMR PMR . GC 4 LMG O 1 503 700 LMG LMG . HC 2 NDP P 1 501 500 NDP NDP . IC 3 PMR P 1 502 600 PMR PMR . JC 4 LMG P 1 503 700 LMG LMG . KC 2 NDP Q 1 501 500 NDP NDP . LC 3 PMR Q 1 502 600 PMR PMR . MC 4 LMG Q 1 503 700 LMG LMG . NC 2 NDP R 1 501 500 NDP NDP . OC 3 PMR R 1 502 600 PMR PMR . PC 4 LMG R 1 503 700 LMG LMG . QC 2 NDP S 1 501 500 NDP NDP . RC 3 PMR S 1 502 600 PMR PMR . SC 4 LMG S 1 503 700 LMG LMG . TC 2 NDP T 1 501 500 NDP NDP . UC 3 PMR T 1 502 600 PMR PMR . VC 4 LMG T 1 503 700 LMG LMG . WC 2 NDP V 1 501 500 NDP NDP . XC 3 PMR V 1 502 600 PMR PMR . YC 4 LMG V 1 503 700 LMG LMG . ZC 2 NDP W 1 501 500 NDP NDP . AD 3 PMR W 1 502 600 PMR PMR . BD 4 LMG W 1 503 700 LMG LMG . CD 2 NDP X 1 501 500 NDP NDP . DD 3 PMR X 1 502 600 PMR PMR . ED 4 LMG X 1 503 700 LMG LMG . FD 2 NDP Y 1 501 500 NDP NDP . GD 3 PMR Y 1 502 600 PMR PMR . HD 4 LMG Y 1 503 700 LMG LMG . ID 2 NDP Z 1 501 500 NDP NDP . JD 3 PMR Z 1 502 600 PMR PMR . KD 4 LMG Z 1 503 700 LMG LMG . LD 2 NDP AA 1 501 500 NDP NDP . MD 3 PMR AA 1 502 600 PMR PMR . ND 4 LMG AA 1 503 700 LMG LMG . OD 2 NDP BA 1 501 500 NDP NDP . PD 3 PMR BA 1 502 600 PMR PMR . QD 4 LMG BA 1 503 700 LMG LMG . RD 2 NDP CA 1 501 500 NDP NDP . SD 3 PMR CA 1 502 600 PMR PMR . TD 4 LMG CA 1 503 700 LMG LMG . UD 2 NDP DA 1 501 500 NDP NDP . VD 3 PMR DA 1 502 600 PMR PMR . WD 4 LMG DA 1 503 700 LMG LMG . XD 2 NDP EA 1 501 500 NDP NDP . YD 3 PMR EA 1 502 600 PMR PMR . ZD 4 LMG EA 1 503 700 LMG LMG . AE 2 NDP FA 1 501 500 NDP NDP . BE 3 PMR FA 1 502 600 PMR PMR . CE 4 LMG FA 1 503 700 LMG LMG . DE 2 NDP GA 1 501 500 NDP NDP . EE 3 PMR GA 1 502 600 PMR PMR . FE 4 LMG GA 1 503 700 LMG LMG . GE 2 NDP HA 1 501 500 NDP NDP . HE 3 PMR HA 1 502 600 PMR PMR . IE 4 LMG HA 1 503 700 LMG LMG . JE 2 NDP IA 1 501 500 NDP NDP . KE 3 PMR IA 1 502 600 PMR PMR . LE 4 LMG IA 1 503 700 LMG LMG . ME 2 NDP JA 1 501 500 NDP NDP . NE 3 PMR JA 1 502 600 PMR PMR . OE 4 LMG JA 1 503 700 LMG LMG . PE 2 NDP KA 1 501 500 NDP NDP . QE 3 PMR KA 1 502 600 PMR PMR . RE 4 LMG KA 1 503 700 LMG LMG . SE 2 NDP LA 1 501 500 NDP NDP . TE 3 PMR LA 1 502 600 PMR PMR . UE 4 LMG LA 1 503 700 LMG LMG . VE 2 NDP MA 1 501 500 NDP NDP . WE 3 PMR MA 1 502 600 PMR PMR . XE 4 LMG MA 1 503 700 LMG LMG . YE 2 NDP NA 1 501 500 NDP NDP . ZE 3 PMR NA 1 502 600 PMR PMR . AF 4 LMG NA 1 503 700 LMG LMG . BF 2 NDP OA 1 501 500 NDP NDP . CF 3 PMR OA 1 502 600 PMR PMR . DF 4 LMG OA 1 503 700 LMG LMG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG PMR . . . KB 3 282.911 204.482 248.975 1 46.68 ? MG PMR 502 H 1 HETATM 2 C CBB PMR . . . KB 3 281.895 199.864 244.96 1 46.68 ? CBB PMR 502 H 1 HETATM 3 C CAB PMR . . . KB 3 283.113 200.125 245.465 1 46.68 ? CAB PMR 502 H 1 HETATM 4 C C3B PMR . . . KB 3 283.46 201.038 246.55 1 46.68 ? C3B PMR 502 H 1 HETATM 5 C C2B PMR . . . KB 3 284.554 200.903 247.403 1 46.68 ? C2B PMR 502 H 1 HETATM 6 C CMB PMR . . . KB 3 285.596 199.833 247.42 1 46.68 ? CMB PMR 502 H 1 HETATM 7 C C1B PMR . . . KB 3 284.525 202.025 248.323 1 46.68 ? C1B PMR 502 H 1 HETATM 8 C CHB PMR . . . KB 3 285.445 202.283 249.361 1 46.68 ? CHB PMR 502 H 1 HETATM 9 N NB PMR . . . KB 3 283.443 202.794 248.003 1 46.68 ? NB PMR 502 H 1 HETATM 10 C C4B PMR . . . KB 3 282.759 202.254 246.961 1 46.68 ? C4B PMR 502 H 1 HETATM 11 C CHC PMR . . . KB 3 281.597 202.811 246.399 1 46.68 ? CHC PMR 502 H 1 HETATM 12 C C1C PMR . . . KB 3 280.516 203.49 247.006 1 46.68 ? C1C PMR 502 H 1 HETATM 13 N NC PMR . . . KB 3 280.302 203.793 248.32 1 46.68 ? NC PMR 502 H 1 HETATM 14 C C2C PMR . . . KB 3 279.444 204.126 246.269 1 46.68 ? C2C PMR 502 H 1 HETATM 15 C CMC PMR . . . KB 3 278.609 203.368 245.289 1 46.68 ? CMC PMR 502 H 1 HETATM 16 C C3C PMR . . . KB 3 279.052 205.193 247.06 1 46.68 ? C3C PMR 502 H 1 HETATM 17 C CAC PMR . . . KB 3 277.747 205.92 246.961 1 46.68 ? CAC PMR 502 H 1 HETATM 18 C CBC PMR . . . KB 3 276.592 205.115 247.571 1 46.68 ? CBC PMR 502 H 1 HETATM 19 C C4C PMR . . . KB 3 279.816 205.083 248.302 1 46.68 ? C4C PMR 502 H 1 HETATM 20 C CHD PMR . . . KB 3 279.84 206.046 249.343 1 46.68 ? CHD PMR 502 H 1 HETATM 21 C C1D PMR . . . KB 3 280.885 206.416 250.224 1 46.68 ? C1D PMR 502 H 1 HETATM 22 C C2D PMR . . . KB 3 280.852 207.395 251.31 1 46.68 ? C2D PMR 502 H 1 HETATM 23 C CMD PMR . . . KB 3 279.699 208.242 251.728 1 46.68 ? CMD PMR 502 H 1 HETATM 24 N ND PMR . . . KB 3 282.15 205.877 250.176 1 46.68 ? ND PMR 502 H 1 HETATM 25 C C4D PMR . . . KB 3 282.893 206.42 251.148 1 46.68 ? C4D PMR 502 H 1 HETATM 26 C C3D PMR . . . KB 3 282.122 207.374 251.862 1 46.68 ? C3D PMR 502 H 1 HETATM 27 C CAD PMR . . . KB 3 282.967 207.959 252.904 1 46.68 ? CAD PMR 502 H 1 HETATM 28 O OAD PMR . . . KB 3 282.69 208.876 253.642 1 46.68 ? OAD PMR 502 H 1 HETATM 29 C CBD PMR . . . KB 3 284.409 207.403 252.635 1 46.68 ? CBD PMR 502 H 1 HETATM 30 C CGD PMR . . . KB 3 285.185 208.573 251.989 1 46.68 ? CGD PMR 502 H 1 HETATM 31 O O1D PMR . . . KB 3 285.151 208.729 250.793 1 46.68 ? O1D PMR 502 H 1 HETATM 32 O O2D PMR . . . KB 3 285.493 209.616 252.752 1 46.68 ? O2D PMR 502 H 1 HETATM 33 C C2O PMR . . . KB 3 286.553 210.574 252.57 1 46.68 ? C2O PMR 502 H 1 HETATM 34 C CHA PMR . . . KB 3 284.227 206.283 251.603 1 46.68 ? CHA PMR 502 H 1 HETATM 35 C C1A PMR . . . KB 3 285.1 205.228 251.236 1 46.68 ? C1A PMR 502 H 1 HETATM 36 N NA PMR . . . KB 3 284.689 203.92 251.072 1 46.68 ? NA PMR 502 H 1 HETATM 37 C C4A PMR . . . KB 3 285.601 203.413 250.194 1 46.68 ? C4A PMR 502 H 1 HETATM 38 C C3A PMR . . . KB 3 286.858 204.066 250.503 1 46.68 ? C3A PMR 502 H 1 HETATM 39 C CMA PMR . . . KB 3 288.178 203.386 250.387 1 46.68 ? CMA PMR 502 H 1 HETATM 40 C C2A PMR . . . KB 3 286.546 205.098 251.367 1 46.68 ? C2A PMR 502 H 1 HETATM 41 C CAA PMR . . . KB 3 287.236 205.335 252.658 1 46.68 ? CAA PMR 502 H 1 HETATM 42 C CBA PMR . . . KB 3 288.131 206.576 252.747 1 46.68 ? CBA PMR 502 H 1 HETATM 43 C CGA PMR . . . KB 3 288.022 207.232 254.161 1 46.68 ? CGA PMR 502 H 1 HETATM 44 O O1A PMR . . . KB 3 288.033 206.409 255.116 1 46.68 ? O1A PMR 502 H 1 HETATM 45 O O2A PMR . . . KB 3 288.255 208.444 254.214 1 46.68 ? O2A PMR 502 H 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 517 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 45 #