data_7JKT
#
_model_server_result.job_id            WSTPtyH3ckImQNYUFlgSSg 
_model_server_result.datetime_utc      '2024-11-01 19:31:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jkt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":610}' 
#
_entry.id    7JKT 
#
_exptl.entry_id    7JKT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.305 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7JKT 
_cell.length_a            67.252 
_cell.length_b            67.857 
_cell.length_c            240.585 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JKT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 G CYS 54 1_555 A SG CYS 31 G CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 76 G CYS 119 1_555 A SG CYS 89 G CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 102 G CYS 218 1_555 A SG CYS 131 G CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 A SG CYS 112 G CYS 228 1_555 A SG CYS 123 G CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf5 A SG CYS 180 G CYS 296 1_555 A SG CYS 199 G CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf6 A SG CYS 245 G CYS 378 1_555 A SG CYS 310 G CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 A SG CYS 252 G CYS 385 1_555 A SG CYS 283 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf8 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
disulf ? disulf9 B SG CYS 149 H CYS 140 1_555 B SG CYS 204 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 C SG CYS 23 L CYS 23 1_555 C SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf11 C SG CYS 133 L CYS 137 1_555 C SG CYS 193 L CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A ND2 ASN 118 G ASN 234 1_555 D C1 NAG . G NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 A ND2 ASN 146 G ASN 262 1_555 H C1 NAG . G NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale3 A ND2 ASN 160 G ASN 276 1_555 K C1 NAG . G NAG 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale4 A ND2 ASN 173 G ASN 289 1_555 G C1 NAG . G NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale5 A ND2 ASN 179 G ASN 295 1_555 F C1 NAG . G NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale6 A ND2 ASN 229 G ASN 362 1_555 I C1 NAG . G NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale7 A ND2 ASN 253 G ASN 386 1_555 L C1 NAG . G NAG 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale8 A ND2 ASN 259 G ASN 392 1_555 J C1 NAG . G NAG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale9 A ND2 ASN 278 G ASN 413 1_555 E C1 NAG . G NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C8 H18 N2 O4 S' 
_chem_comp.formula_weight    238.305 
_chem_comp.id                EPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEPES 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EPE sing 83 n n 
N1 C6 EPE sing 84 n n 
N1 C9 EPE sing 85 n n 
C2 C3 EPE sing 86 n n 
C2 H21 EPE sing 87 n n 
C2 H22 EPE sing 88 n n 
C3 N4 EPE sing 89 n n 
C3 H31 EPE sing 90 n n 
C3 H32 EPE sing 91 n n 
N4 C5 EPE sing 92 n n 
N4 C7 EPE sing 93 n n 
C5 C6 EPE sing 94 n n 
C5 H51 EPE sing 95 n n 
C5 H52 EPE sing 96 n n 
C6 H61 EPE sing 97 n n 
C6 H62 EPE sing 98 n n 
C7 C8 EPE sing 99 n n 
C7 H71 EPE sing 100 n n 
C7 H72 EPE sing 101 n n 
C8 O8 EPE sing 102 n n 
C8 H81 EPE sing 103 n n 
C8 H82 EPE sing 104 n n 
O8 HO8 EPE sing 105 n n 
C9 C10 EPE sing 106 n n 
C9 H91 EPE sing 107 n n 
C9 H92 EPE sing 108 n n 
C10 S EPE sing 109 n n 
C10 H101 EPE sing 110 n n 
C10 H102 EPE sing 111 n n 
S O1S EPE doub 112 n n 
S O2S EPE doub 113 n n 
S O3S EPE sing 114 n n 
O3S HOS3 EPE sing 115 n n 
#
_atom_sites.entry_id                     7JKT 
_atom_sites.fract_transf_matrix[1][1]    0.014869 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014737 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004157 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG G 1 601 601 NAG NAG . 
E 4 NAG G 1 602 602 NAG NAG . 
F 4 NAG G 1 603 603 NAG NAG . 
G 4 NAG G 1 604 604 NAG NAG . 
H 4 NAG G 1 605 605 NAG NAG . 
I 4 NAG G 1 606 606 NAG NAG . 
J 4 NAG G 1 607 608 NAG NAG . 
K 4 NAG G 1 608 776 NAG NAG . 
L 4 NAG G 1 609 777 NAG NAG . 
M 5 EPE G 1 610 1 EPE EPE . 
N 6 SO4 H 1 301 3 SO4 SO4 . 
O 6 SO4 H 1 302 4 SO4 SO4 . 
P 7 HOH G 1 701 15 HOH HOH . 
P 7 HOH G 2 702 3 HOH HOH . 
P 7 HOH G 3 703 5 HOH HOH . 
P 7 HOH G 4 704 25 HOH HOH . 
P 7 HOH G 5 705 30 HOH HOH . 
P 7 HOH G 6 706 13 HOH HOH . 
P 7 HOH G 7 707 19 HOH HOH . 
P 7 HOH G 8 708 6 HOH HOH . 
P 7 HOH G 9 709 22 HOH HOH . 
P 7 HOH G 10 710 20 HOH HOH . 
Q 7 HOH H 1 401 26 HOH HOH . 
Q 7 HOH H 2 402 24 HOH HOH . 
Q 7 HOH H 3 403 29 HOH HOH . 
Q 7 HOH H 4 404 17 HOH HOH . 
Q 7 HOH H 5 405 11 HOH HOH . 
Q 7 HOH H 6 406 7 HOH HOH . 
Q 7 HOH H 7 407 31 HOH HOH . 
Q 7 HOH H 8 408 21 HOH HOH . 
Q 7 HOH H 9 409 8 HOH HOH . 
Q 7 HOH H 10 410 23 HOH HOH . 
Q 7 HOH H 11 411 16 HOH HOH . 
Q 7 HOH H 12 412 10 HOH HOH . 
Q 7 HOH H 13 413 9 HOH HOH . 
Q 7 HOH H 14 414 12 HOH HOH . 
R 7 HOH L 1 301 2 HOH HOH . 
R 7 HOH L 2 302 27 HOH HOH . 
R 7 HOH L 3 303 4 HOH HOH . 
R 7 HOH L 4 304 1 HOH HOH . 
R 7 HOH L 5 305 14 HOH HOH . 
R 7 HOH L 6 306 28 HOH HOH . 
R 7 HOH L 7 307 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 EPE . . . M 5 30.203 -20.37 -53.458 1 62.45 ? N1 EPE 610 G 1 
HETATM 2 C C2 EPE . . . M 5 31.156 -19.916 -52.439 1 53.56 ? C2 EPE 610 G 1 
HETATM 3 C C3 EPE . . . M 5 30.422 -19.822 -51.11 1 50.03 ? C3 EPE 610 G 1 
HETATM 4 N N4 EPE . . . M 5 29.14 -19.143 -51.208 1 57.89 ? N4 EPE 610 G 1 
HETATM 5 C C5 EPE . . . M 5 28.33 -19.267 -52.407 1 53.2 ? C5 EPE 610 G 1 
HETATM 6 C C6 EPE . . . M 5 29.181 -19.337 -53.667 1 56.15 ? C6 EPE 610 G 1 
HETATM 7 C C7 EPE . . . M 5 28.496 -18.715 -49.98 1 70.15 ? C7 EPE 610 G 1 
HETATM 8 C C8 EPE . . . M 5 29.335 -17.684 -49.23 1 79.2 ? C8 EPE 610 G 1 
HETATM 9 O O8 EPE . . . M 5 30.226 -18.305 -48.327 1 77.88 ? O8 EPE 610 G 1 
HETATM 10 C C9 EPE . . . M 5 30.908 -20.664 -54.711 1 74.57 ? C9 EPE 610 G 1 
HETATM 11 C C10 EPE . . . M 5 31.105 -22.171 -54.78 1 81.51 ? C10 EPE 610 G 1 
HETATM 12 S S EPE . . . M 5 32.485 -22.651 -55.838 1 80.28 ? S EPE 610 G 1 
HETATM 13 O O1S EPE . . . M 5 33.063 -21.475 -56.48 1 69.56 ? O1S EPE 610 G 1 
HETATM 14 O O2S EPE . . . M 5 32.005 -23.587 -56.845 1 86.61 ? O2S EPE 610 G 1 
HETATM 15 O O3S EPE . . . M 5 33.492 -23.299 -55.008 1 85.6 ? O3S EPE 610 G 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           15 
#