data_7JKW # _model_server_result.job_id HJvct3zmY1b91RqRJEUung _model_server_result.datetime_utc '2024-10-19 03:35:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jkw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7JKW # _exptl.entry_id 7JKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 583.704 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(6-{5-[(azetidin-3-yl)amino]-1-methyl-6-oxo-1,6-dihydropyridin-3-yl}-1-[1,1-di(pyridin-2-yl)ethyl]-1H-indol-4-yl)ethanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JKW _cell.length_a 38.187 _cell.length_b 42.229 _cell.length_c 90.627 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H33 N7 O3 S' _chem_comp.formula_weight 583.704 _chem_comp.id VCV _chem_comp.mon_nstd_flag . _chem_comp.name N-(6-{5-[(azetidin-3-yl)amino]-1-methyl-6-oxo-1,6-dihydropyridin-3-yl}-1-[1,1-di(pyridin-2-yl)ethyl]-1H-indol-4-yl)ethanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C31 VCV sing 376 n n N7 C30 VCV sing 377 n n C16 N1 VCV doub 378 n y C16 C17 VCV sing 379 n y C31 C29 VCV sing 380 n n N1 C15 VCV sing 381 n y C17 C18 VCV doub 382 n y C30 C29 VCV sing 383 n n C12 C11 VCV doub 384 n y C12 C13 VCV sing 385 n y C11 C10 VCV sing 386 n y C13 C14 VCV doub 387 n y C20 C9 VCV sing 388 n n C15 C9 VCV sing 389 n n C15 C19 VCV doub 390 n y C10 N2 VCV doub 391 n y C10 C9 VCV sing 392 n n C29 N6 VCV sing 393 n n C14 N2 VCV sing 394 n y C18 C19 VCV sing 395 n y C9 N3 VCV sing 396 n n N6 C23 VCV sing 397 n n N3 C8 VCV sing 398 n y N3 C5 VCV sing 399 n y C23 C22 VCV doub 400 n n C23 C24 VCV sing 401 n n C22 C21 VCV sing 402 n n C4 C5 VCV doub 403 n y C4 C3 VCV sing 404 n y C8 C7 VCV doub 405 n y O3 C24 VCV doub 406 n n C5 C6 VCV sing 407 n y C24 N5 VCV sing 408 n n C21 C3 VCV sing 409 n n C21 C25 VCV doub 410 n n C3 C2 VCV doub 411 n y C7 C6 VCV sing 412 n y N5 C25 VCV sing 413 n n N5 C28 VCV sing 414 n n C6 C1 VCV doub 415 n y C2 C1 VCV sing 416 n y C1 N4 VCV sing 417 n n N4 S1 VCV sing 418 n n O1 S1 VCV doub 419 n n S1 C26 VCV sing 420 n n S1 O2 VCV doub 421 n n C26 C27 VCV sing 422 n n C2 H1 VCV sing 423 n n C4 H2 VCV sing 424 n n C7 H3 VCV sing 425 n n C8 H4 VCV sing 426 n n C11 H5 VCV sing 427 n n C12 H6 VCV sing 428 n n C13 H7 VCV sing 429 n n C14 H8 VCV sing 430 n n C16 H9 VCV sing 431 n n C17 H10 VCV sing 432 n n C18 H11 VCV sing 433 n n C19 H12 VCV sing 434 n n C20 H13 VCV sing 435 n n C20 H14 VCV sing 436 n n C20 H15 VCV sing 437 n n C22 H16 VCV sing 438 n n C25 H17 VCV sing 439 n n C26 H18 VCV sing 440 n n C26 H19 VCV sing 441 n n C27 H20 VCV sing 442 n n C27 H21 VCV sing 443 n n C27 H22 VCV sing 444 n n N4 H23 VCV sing 445 n n C28 H24 VCV sing 446 n n C28 H25 VCV sing 447 n n C28 H26 VCV sing 448 n n C29 H27 VCV sing 449 n n C30 H28 VCV sing 450 n n C30 H29 VCV sing 451 n n C31 H30 VCV sing 452 n n C31 H31 VCV sing 453 n n N6 H32 VCV sing 454 n n N7 H33 VCV sing 455 n n # _atom_sites.entry_id 7JKW _atom_sites.fract_transf_matrix[1][1] 0.026187 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VCV A 1 401 401 VCV Z99 . C 3 HOH A 1 501 121 HOH HOH . C 3 HOH A 2 502 153 HOH HOH . C 3 HOH A 3 503 156 HOH HOH . C 3 HOH A 4 504 109 HOH HOH . C 3 HOH A 5 505 98 HOH HOH . C 3 HOH A 6 506 129 HOH HOH . C 3 HOH A 7 507 20 HOH HOH . C 3 HOH A 8 508 155 HOH HOH . C 3 HOH A 9 509 71 HOH HOH . C 3 HOH A 10 510 91 HOH HOH . C 3 HOH A 11 511 158 HOH HOH . C 3 HOH A 12 512 105 HOH HOH . C 3 HOH A 13 513 32 HOH HOH . C 3 HOH A 14 514 82 HOH HOH . C 3 HOH A 15 515 36 HOH HOH . C 3 HOH A 16 516 6 HOH HOH . C 3 HOH A 17 517 139 HOH HOH . C 3 HOH A 18 518 37 HOH HOH . C 3 HOH A 19 519 11 HOH HOH . C 3 HOH A 20 520 116 HOH HOH . C 3 HOH A 21 521 76 HOH HOH . C 3 HOH A 22 522 21 HOH HOH . C 3 HOH A 23 523 51 HOH HOH . C 3 HOH A 24 524 142 HOH HOH . C 3 HOH A 25 525 77 HOH HOH . C 3 HOH A 26 526 63 HOH HOH . C 3 HOH A 27 527 2 HOH HOH . C 3 HOH A 28 528 39 HOH HOH . C 3 HOH A 29 529 127 HOH HOH . C 3 HOH A 30 530 96 HOH HOH . C 3 HOH A 31 531 66 HOH HOH . C 3 HOH A 32 532 100 HOH HOH . C 3 HOH A 33 533 88 HOH HOH . C 3 HOH A 34 534 135 HOH HOH . C 3 HOH A 35 535 107 HOH HOH . C 3 HOH A 36 536 10 HOH HOH . C 3 HOH A 37 537 8 HOH HOH . C 3 HOH A 38 538 89 HOH HOH . C 3 HOH A 39 539 34 HOH HOH . C 3 HOH A 40 540 44 HOH HOH . C 3 HOH A 41 541 64 HOH HOH . C 3 HOH A 42 542 85 HOH HOH . C 3 HOH A 43 543 13 HOH HOH . C 3 HOH A 44 544 99 HOH HOH . C 3 HOH A 45 545 131 HOH HOH . C 3 HOH A 46 546 43 HOH HOH . C 3 HOH A 47 547 16 HOH HOH . C 3 HOH A 48 548 56 HOH HOH . C 3 HOH A 49 549 60 HOH HOH . C 3 HOH A 50 550 87 HOH HOH . C 3 HOH A 51 551 17 HOH HOH . C 3 HOH A 52 552 48 HOH HOH . C 3 HOH A 53 553 52 HOH HOH . C 3 HOH A 54 554 19 HOH HOH . C 3 HOH A 55 555 1 HOH HOH . C 3 HOH A 56 556 4 HOH HOH . C 3 HOH A 57 557 84 HOH HOH . C 3 HOH A 58 558 119 HOH HOH . C 3 HOH A 59 559 3 HOH HOH . C 3 HOH A 60 560 72 HOH HOH . C 3 HOH A 61 561 7 HOH HOH . C 3 HOH A 62 562 75 HOH HOH . C 3 HOH A 63 563 14 HOH HOH . C 3 HOH A 64 564 101 HOH HOH . C 3 HOH A 65 565 74 HOH HOH . C 3 HOH A 66 566 92 HOH HOH . C 3 HOH A 67 567 41 HOH HOH . C 3 HOH A 68 568 23 HOH HOH . C 3 HOH A 69 569 42 HOH HOH . C 3 HOH A 70 570 113 HOH HOH . C 3 HOH A 71 571 27 HOH HOH . C 3 HOH A 72 572 130 HOH HOH . C 3 HOH A 73 573 140 HOH HOH . C 3 HOH A 74 574 22 HOH HOH . C 3 HOH A 75 575 55 HOH HOH . C 3 HOH A 76 576 9 HOH HOH . C 3 HOH A 77 577 150 HOH HOH . C 3 HOH A 78 578 47 HOH HOH . C 3 HOH A 79 579 90 HOH HOH . C 3 HOH A 80 580 38 HOH HOH . C 3 HOH A 81 581 49 HOH HOH . C 3 HOH A 82 582 73 HOH HOH . C 3 HOH A 83 583 30 HOH HOH . C 3 HOH A 84 584 28 HOH HOH . C 3 HOH A 85 585 115 HOH HOH . C 3 HOH A 86 586 123 HOH HOH . C 3 HOH A 87 587 97 HOH HOH . C 3 HOH A 88 588 143 HOH HOH . C 3 HOH A 89 589 5 HOH HOH . C 3 HOH A 90 590 33 HOH HOH . C 3 HOH A 91 591 62 HOH HOH . C 3 HOH A 92 592 86 HOH HOH . C 3 HOH A 93 593 15 HOH HOH . C 3 HOH A 94 594 70 HOH HOH . C 3 HOH A 95 595 79 HOH HOH . C 3 HOH A 96 596 18 HOH HOH . C 3 HOH A 97 597 61 HOH HOH . C 3 HOH A 98 598 103 HOH HOH . C 3 HOH A 99 599 111 HOH HOH . C 3 HOH A 100 600 112 HOH HOH . C 3 HOH A 101 601 152 HOH HOH . C 3 HOH A 102 602 35 HOH HOH . C 3 HOH A 103 603 57 HOH HOH . C 3 HOH A 104 604 151 HOH HOH . C 3 HOH A 105 605 46 HOH HOH . C 3 HOH A 106 606 147 HOH HOH . C 3 HOH A 107 607 12 HOH HOH . C 3 HOH A 108 608 50 HOH HOH . C 3 HOH A 109 609 58 HOH HOH . C 3 HOH A 110 610 45 HOH HOH . C 3 HOH A 111 611 54 HOH HOH . C 3 HOH A 112 612 69 HOH HOH . C 3 HOH A 113 613 67 HOH HOH . C 3 HOH A 114 614 122 HOH HOH . C 3 HOH A 115 615 157 HOH HOH . C 3 HOH A 116 616 141 HOH HOH . C 3 HOH A 117 617 26 HOH HOH . C 3 HOH A 118 618 138 HOH HOH . C 3 HOH A 119 619 65 HOH HOH . C 3 HOH A 120 620 136 HOH HOH . C 3 HOH A 121 621 118 HOH HOH . C 3 HOH A 122 622 128 HOH HOH . C 3 HOH A 123 623 29 HOH HOH . C 3 HOH A 124 624 133 HOH HOH . C 3 HOH A 125 625 137 HOH HOH . C 3 HOH A 126 626 40 HOH HOH . C 3 HOH A 127 627 68 HOH HOH . C 3 HOH A 128 628 126 HOH HOH . C 3 HOH A 129 629 78 HOH HOH . C 3 HOH A 130 630 145 HOH HOH . C 3 HOH A 131 631 83 HOH HOH . C 3 HOH A 132 632 149 HOH HOH . C 3 HOH A 133 633 144 HOH HOH . C 3 HOH A 134 634 114 HOH HOH . C 3 HOH A 135 635 120 HOH HOH . C 3 HOH A 136 636 117 HOH HOH . C 3 HOH A 137 637 108 HOH HOH . C 3 HOH A 138 638 93 HOH HOH . C 3 HOH A 139 639 124 HOH HOH . C 3 HOH A 140 640 31 HOH HOH . C 3 HOH A 141 641 104 HOH HOH . C 3 HOH A 142 642 94 HOH HOH . C 3 HOH A 143 643 148 HOH HOH . C 3 HOH A 144 644 81 HOH HOH . C 3 HOH A 145 645 53 HOH HOH . C 3 HOH A 146 646 24 HOH HOH . C 3 HOH A 147 647 106 HOH HOH . C 3 HOH A 148 648 25 HOH HOH . C 3 HOH A 149 649 159 HOH HOH . C 3 HOH A 150 650 125 HOH HOH . C 3 HOH A 151 651 59 HOH HOH . C 3 HOH A 152 652 134 HOH HOH . C 3 HOH A 153 653 154 HOH HOH . C 3 HOH A 154 654 146 HOH HOH . C 3 HOH A 155 655 95 HOH HOH . C 3 HOH A 156 656 80 HOH HOH . C 3 HOH A 157 657 132 HOH HOH . C 3 HOH A 158 658 102 HOH HOH . C 3 HOH A 159 659 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VCV . . . B 2 14.51 15.298 5.802 1 11 ? C1 VCV 401 A 1 HETATM 2 C C2 VCV . . . B 2 13.316 14.602 5.599 1 10.73 ? C2 VCV 401 A 1 HETATM 3 C C3 VCV . . . B 2 12.915 14.258 4.317 1 10.48 ? C3 VCV 401 A 1 HETATM 4 C C4 VCV . . . B 2 13.724 14.539 3.213 1 11.71 ? C4 VCV 401 A 1 HETATM 5 C C5 VCV . . . B 2 14.929 15.195 3.42 1 12.18 ? C5 VCV 401 A 1 HETATM 6 C C6 VCV . . . B 2 15.33 15.609 4.698 1 12.04 ? C6 VCV 401 A 1 HETATM 7 C C7 VCV . . . B 2 16.579 16.31 4.552 1 12.54 ? C7 VCV 401 A 1 HETATM 8 C C8 VCV . . . B 2 16.867 16.301 3.216 1 13.5 ? C8 VCV 401 A 1 HETATM 9 C C9 VCV . . . B 2 15.858 15.531 1.052 1 13.42 ? C9 VCV 401 A 1 HETATM 10 C C10 VCV . . . B 2 14.97 16.723 0.68 1 16.94 ? C10 VCV 401 A 1 HETATM 11 C C11 VCV . . . B 2 15.471 17.96 0.292 1 23.89 ? C11 VCV 401 A 1 HETATM 12 C C12 VCV . . . B 2 14.58 19.001 0.057 1 24.38 ? C12 VCV 401 A 1 HETATM 13 C C13 VCV . . . B 2 13.233 18.819 0.313 1 21.94 ? C13 VCV 401 A 1 HETATM 14 C C14 VCV . . . B 2 12.818 17.597 0.722 1 21.26 ? C14 VCV 401 A 1 HETATM 15 C C15 VCV . . . B 2 15.329 14.168 0.579 1 12.28 ? C15 VCV 401 A 1 HETATM 16 C C16 VCV . . . B 2 14.164 12.927 -0.936 1 12.15 ? C16 VCV 401 A 1 HETATM 17 C C17 VCV . . . B 2 14.535 11.732 -0.352 1 11.56 ? C17 VCV 401 A 1 HETATM 18 C C18 VCV . . . B 2 15.363 11.782 0.741 1 11.05 ? C18 VCV 401 A 1 HETATM 19 C C19 VCV . . . B 2 15.747 13.016 1.207 1 11.62 ? C19 VCV 401 A 1 HETATM 20 N N1 VCV . . . B 2 14.546 14.131 -0.497 1 12.32 ? N1 VCV 401 A 1 HETATM 21 N N2 VCV . . . B 2 13.669 16.576 0.909 1 17.79 ? N2 VCV 401 A 1 HETATM 22 N N3 VCV . . . B 2 15.924 15.62 2.519 1 12.78 ? N3 VCV 401 A 1 HETATM 23 C C20 VCV . . . B 2 17.269 15.692 0.414 1 14.6 ? C20 VCV 401 A 1 HETATM 24 C C21 VCV . . . B 2 11.576 13.665 4.082 1 10.33 ? C21 VCV 401 A 1 HETATM 25 C C22 VCV . . . B 2 10.823 14.121 2.997 1 11.03 ? C22 VCV 401 A 1 HETATM 26 C C23 VCV . . . B 2 9.55 13.628 2.758 1 11.98 ? C23 VCV 401 A 1 HETATM 27 C C24 VCV . . . B 2 8.982 12.589 3.57 1 9.88 ? C24 VCV 401 A 1 HETATM 28 C C25 VCV . . . B 2 11.054 12.673 4.864 1 10.12 ? C25 VCV 401 A 1 HETATM 29 C C26 VCV . . . B 2 13.816 14.349 9.1 1 13.42 ? C26 VCV 401 A 1 HETATM 30 C C27 VCV . . . B 2 15.129 13.731 9.465 1 14.53 ? C27 VCV 401 A 1 HETATM 31 N N4 VCV . . . B 2 14.943 15.747 7.046 1 11.19 ? N4 VCV 401 A 1 HETATM 32 S S1 VCV . . . B 2 14.029 15.953 8.369 1 11.89 ? S1 VCV 401 A 1 HETATM 33 O O1 VCV . . . B 2 12.738 16.419 7.978 1 12.26 ? O1 VCV 401 A 1 HETATM 34 O O2 VCV . . . B 2 14.793 16.752 9.289 1 13.01 ? O2 VCV 401 A 1 HETATM 35 N N5 VCV . . . B 2 9.792 12.169 4.602 1 10.25 ? N5 VCV 401 A 1 HETATM 36 C C28 VCV . . . B 2 9.289 11.115 5.473 1 10.34 ? C28 VCV 401 A 1 HETATM 37 C C29 VCV . . . B 2 9.362 15.042 0.692 1 16.96 ? C29 VCV 401 A 1 HETATM 38 C C30 VCV . . . B 2 10.446 14.526 -0.311 1 19.66 ? C30 VCV 401 A 1 HETATM 39 C C31 VCV . . . B 2 8.527 15.457 -0.562 1 19.59 ? C31 VCV 401 A 1 HETATM 40 O O3 VCV . . . B 2 7.865 12.091 3.373 1 10.77 ? O3 VCV 401 A 1 HETATM 41 N N6 VCV . . . B 2 8.831 14.098 1.677 1 13.31 ? N6 VCV 401 A 1 HETATM 42 N N7 VCV . . . B 2 9.708 15.207 -1.4 1 23.77 ? N7 VCV 401 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #