data_7JKZ # _model_server_result.job_id 1sq8Pq9LlAZkSLIzBXjl3Q _model_server_result.datetime_utc '2024-10-19 03:41:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7JKZ # _exptl.entry_id 7JKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 611.757 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(1-[1,1-di(pyridin-2-yl)ethyl]-6-{1-methyl-6-oxo-5-[(piperidin-4-yl)amino]-1,6-dihydropyridin-3-yl}-1H-indol-4-yl)ethanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JKZ _cell.length_a 63.01 _cell.length_b 63.01 _cell.length_c 102.722 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H37 N7 O3 S' _chem_comp.formula_weight 611.757 _chem_comp.id YF6 _chem_comp.mon_nstd_flag . _chem_comp.name N-(1-[1,1-di(pyridin-2-yl)ethyl]-6-{1-methyl-6-oxo-5-[(piperidin-4-yl)amino]-1,6-dihydropyridin-3-yl}-1H-indol-4-yl)ethanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C15 YF6 sing 398 n n N3 C14 YF6 sing 399 n n C31 C30 YF6 doub 400 n y C31 C32 YF6 sing 401 n y C15 C16 YF6 sing 402 n n C14 C13 YF6 sing 403 n n C30 C25 YF6 sing 404 n y C28 C29 YF6 doub 405 n y C28 C27 YF6 sing 406 n y C32 C33 YF6 doub 407 n y C29 C24 YF6 sing 408 n y C27 C26 YF6 doub 409 n y C16 C12 YF6 sing 410 n n C13 C12 YF6 sing 411 n n C23 C22 YF6 sing 412 n n C25 C22 YF6 sing 413 n n C25 N7 YF6 doub 414 n y C24 C22 YF6 sing 415 n n C24 N6 YF6 doub 416 n y C33 N7 YF6 sing 417 n y C12 N2 YF6 sing 418 n n C26 N6 YF6 sing 419 n y C22 N4 YF6 sing 420 n n N2 C9 YF6 sing 421 n n N4 C19 YF6 sing 422 n y N4 C4 YF6 sing 423 n y C9 C8 YF6 doub 424 n n C9 C10 YF6 sing 425 n n C8 C7 YF6 sing 426 n n C19 C18 YF6 doub 427 n y C5 C4 YF6 doub 428 n y C5 C6 YF6 sing 429 n y C4 C3 YF6 sing 430 n y O1 C10 YF6 doub 431 n n C10 N1 YF6 sing 432 n n C7 C6 YF6 sing 433 n n C7 C11 YF6 doub 434 n n C6 C1 YF6 doub 435 n y C18 C3 YF6 sing 436 n y C3 C2 YF6 doub 437 n y N1 C11 YF6 sing 438 n n N1 C17 YF6 sing 439 n n C1 C2 YF6 sing 440 n y C2 N5 YF6 sing 441 n n N5 S1 YF6 sing 442 n n O2 S1 YF6 doub 443 n n S1 C20 YF6 sing 444 n n S1 O3 YF6 doub 445 n n C20 C21 YF6 sing 446 n n C1 H1 YF6 sing 447 n n C5 H2 YF6 sing 448 n n C8 H3 YF6 sing 449 n n C11 H4 YF6 sing 450 n n N2 H5 YF6 sing 451 n n C12 H6 YF6 sing 452 n n C13 H7 YF6 sing 453 n n C13 H8 YF6 sing 454 n n C14 H9 YF6 sing 455 n n C14 H10 YF6 sing 456 n n N3 H11 YF6 sing 457 n n C15 H13 YF6 sing 458 n n C15 H14 YF6 sing 459 n n C16 H15 YF6 sing 460 n n C16 H16 YF6 sing 461 n n C17 H17 YF6 sing 462 n n C17 H18 YF6 sing 463 n n C17 H19 YF6 sing 464 n n C18 H20 YF6 sing 465 n n C19 H21 YF6 sing 466 n n N5 H22 YF6 sing 467 n n C20 H23 YF6 sing 468 n n C20 H24 YF6 sing 469 n n C21 H25 YF6 sing 470 n n C21 H26 YF6 sing 471 n n C21 H27 YF6 sing 472 n n C23 H28 YF6 sing 473 n n C23 H29 YF6 sing 474 n n C23 H30 YF6 sing 475 n n C26 H31 YF6 sing 476 n n C27 H32 YF6 sing 477 n n C28 H33 YF6 sing 478 n n C29 H34 YF6 sing 479 n n C30 H35 YF6 sing 480 n n C31 H36 YF6 sing 481 n n C32 H37 YF6 sing 482 n n C33 H38 YF6 sing 483 n n # _atom_sites.entry_id 7JKZ _atom_sites.fract_transf_matrix[1][1] 0.01587 _atom_sites.fract_transf_matrix[1][2] 0.009163 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YF6 A 1 501 501 YF6 YF6 . C 3 EDO A 1 502 601 EDO EDO . D 4 GOL A 1 503 1 GOL GOL . E 5 HOH A 1 601 1 HOH HOH . E 5 HOH A 2 602 26 HOH HOH . E 5 HOH A 3 603 25 HOH HOH . E 5 HOH A 4 604 30 HOH HOH . E 5 HOH A 5 605 2 HOH HOH . E 5 HOH A 6 606 6 HOH HOH . E 5 HOH A 7 607 9 HOH HOH . E 5 HOH A 8 608 29 HOH HOH . E 5 HOH A 9 609 23 HOH HOH . E 5 HOH A 10 610 12 HOH HOH . E 5 HOH A 11 611 31 HOH HOH . E 5 HOH A 12 612 7 HOH HOH . E 5 HOH A 13 613 18 HOH HOH . E 5 HOH A 14 614 14 HOH HOH . E 5 HOH A 15 615 10 HOH HOH . E 5 HOH A 16 616 32 HOH HOH . E 5 HOH A 17 617 19 HOH HOH . E 5 HOH A 18 618 16 HOH HOH . E 5 HOH A 19 619 3 HOH HOH . E 5 HOH A 20 620 11 HOH HOH . E 5 HOH A 21 621 21 HOH HOH . E 5 HOH A 22 622 5 HOH HOH . E 5 HOH A 23 623 20 HOH HOH . E 5 HOH A 24 624 34 HOH HOH . E 5 HOH A 25 625 27 HOH HOH . E 5 HOH A 26 626 4 HOH HOH . E 5 HOH A 27 627 8 HOH HOH . E 5 HOH A 28 628 28 HOH HOH . E 5 HOH A 29 629 13 HOH HOH . E 5 HOH A 30 630 15 HOH HOH . E 5 HOH A 31 631 17 HOH HOH . E 5 HOH A 32 632 33 HOH HOH . E 5 HOH A 33 633 24 HOH HOH . E 5 HOH A 34 634 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YF6 . . . B 2 -34.728 -7.04 0.839 1 52.39 ? C1 YF6 501 A 1 HETATM 2 C C2 YF6 . . . B 2 -35.437 -6.689 1.994 1 50.86 ? C2 YF6 501 A 1 HETATM 3 C C3 YF6 . . . B 2 -36.753 -7.137 2.172 1 50.41 ? C3 YF6 501 A 1 HETATM 4 C C4 YF6 . . . B 2 -37.341 -7.92 1.164 1 48.43 ? C4 YF6 501 A 1 HETATM 5 C C5 YF6 . . . B 2 -36.645 -8.243 0.016 1 50.77 ? C5 YF6 501 A 1 HETATM 6 C C6 YF6 . . . B 2 -35.354 -7.761 -0.171 1 48.08 ? C6 YF6 501 A 1 HETATM 7 C C7 YF6 . . . B 2 -34.617 -8.165 -1.393 1 43.18 ? C7 YF6 501 A 1 HETATM 8 C C8 YF6 . . . B 2 -34.747 -9.465 -1.852 1 44.74 ? C8 YF6 501 A 1 HETATM 9 C C9 YF6 . . . B 2 -34.036 -9.895 -2.973 1 41.88 ? C9 YF6 501 A 1 HETATM 10 C C10 YF6 . . . B 2 -33.196 -9.038 -3.671 1 40.71 ? C10 YF6 501 A 1 HETATM 11 N N1 YF6 . . . B 2 -33.093 -7.744 -3.153 1 40.11 ? N1 YF6 501 A 1 HETATM 12 C C11 YF6 . . . B 2 -33.807 -7.314 -2.051 1 42.5 ? C11 YF6 501 A 1 HETATM 13 N N2 YF6 . . . B 2 -34.208 -11.209 -3.383 1 43.9 ? N2 YF6 501 A 1 HETATM 14 C C12 YF6 . . . B 2 -35.148 -12.144 -2.773 1 43.34 ? C12 YF6 501 A 1 HETATM 15 C C13 YF6 . . . B 2 -36.575 -11.848 -3.175 1 47.48 ? C13 YF6 501 A 1 HETATM 16 C C14 YF6 . . . B 2 -37.518 -12.847 -2.537 1 49.71 ? C14 YF6 501 A 1 HETATM 17 N N3 YF6 . . . B 2 -37.151 -14.198 -2.968 1 50.75 ? N3 YF6 501 A 1 HETATM 18 C C15 YF6 . . . B 2 -35.807 -14.522 -2.49 1 49.35 ? C15 YF6 501 A 1 HETATM 19 C C16 YF6 . . . B 2 -34.784 -13.579 -3.088 1 47.85 ? C16 YF6 501 A 1 HETATM 20 C C17 YF6 . . . B 2 -32.211 -6.794 -3.83 1 43.71 ? C17 YF6 501 A 1 HETATM 21 O O1 YF6 . . . B 2 -32.549 -9.353 -4.665 1 40.59 ? O1 YF6 501 A 1 HETATM 22 C C18 YF6 . . . B 2 -37.712 -7.027 3.219 1 48.74 ? C18 YF6 501 A 1 HETATM 23 C C19 YF6 . . . B 2 -38.832 -7.665 2.794 1 52.36 ? C19 YF6 501 A 1 HETATM 24 N N4 YF6 . . . B 2 -38.622 -8.24 1.563 1 52.57 ? N4 YF6 501 A 1 HETATM 25 N N5 YF6 . . . B 2 -34.816 -5.943 3.01 1 45.66 ? N5 YF6 501 A 1 HETATM 26 S S1 YF6 . . . B 2 -33.208 -5.937 3.366 1 45.49 ? S1 YF6 501 A 1 HETATM 27 C C20 YF6 . . . B 2 -32.495 -4.628 2.295 1 42.65 ? C20 YF6 501 A 1 HETATM 28 C C21 YF6 . . . B 2 -33.183 -3.277 2.5 1 43.19 ? C21 YF6 501 A 1 HETATM 29 O O2 YF6 . . . B 2 -32.549 -7.16 3.02 1 34.95 ? O2 YF6 501 A 1 HETATM 30 O O3 YF6 . . . B 2 -33.186 -5.486 4.712 1 44.54 ? O3 YF6 501 A 1 HETATM 31 C C22 YF6 . . . B 2 -39.574 -9.07 0.811 1 49.47 ? C22 YF6 501 A 1 HETATM 32 C C23 YF6 . . . B 2 -39.036 -10.51 0.654 1 47.62 ? C23 YF6 501 A 1 HETATM 33 C C24 YF6 . . . B 2 -40.902 -9.148 1.568 1 42.75 ? C24 YF6 501 A 1 HETATM 34 C C25 YF6 . . . B 2 -39.845 -8.488 -0.574 1 46.03 ? C25 YF6 501 A 1 HETATM 35 N N6 YF6 . . . B 2 -41.919 -8.487 1.026 1 44.49 ? N6 YF6 501 A 1 HETATM 36 C C26 YF6 . . . B 2 -43.1 -8.523 1.675 1 47.45 ? C26 YF6 501 A 1 HETATM 37 C C27 YF6 . . . B 2 -43.299 -9.184 2.874 1 42.4 ? C27 YF6 501 A 1 HETATM 38 C C28 YF6 . . . B 2 -42.234 -9.856 3.427 1 43.33 ? C28 YF6 501 A 1 HETATM 39 C C29 YF6 . . . B 2 -41.019 -9.852 2.765 1 45.05 ? C29 YF6 501 A 1 HETATM 40 C C30 YF6 . . . B 2 -40.106 -9.296 -1.662 1 46.94 ? C30 YF6 501 A 1 HETATM 41 C C31 YF6 . . . B 2 -40.345 -8.704 -2.881 1 52.3 ? C31 YF6 501 A 1 HETATM 42 C C32 YF6 . . . B 2 -40.273 -7.332 -2.993 1 57.49 ? C32 YF6 501 A 1 HETATM 43 C C33 YF6 . . . B 2 -39.995 -6.596 -1.865 1 58.74 ? C33 YF6 501 A 1 HETATM 44 N N7 YF6 . . . B 2 -39.781 -7.155 -0.664 1 58.87 ? N7 YF6 501 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #