data_7JKZ # _model_server_result.job_id Q-H8Ox4hIJ7qstaHi0redQ _model_server_result.datetime_utc '2024-10-19 03:57:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7JKZ # _exptl.entry_id 7JKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JKZ _cell.length_a 63.01 _cell.length_b 63.01 _cell.length_c 102.722 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 7JKZ _atom_sites.fract_transf_matrix[1][1] 0.01587 _atom_sites.fract_transf_matrix[1][2] 0.009163 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YF6 A 1 501 501 YF6 YF6 . C 3 EDO A 1 502 601 EDO EDO . D 4 GOL A 1 503 1 GOL GOL . E 5 HOH A 1 601 1 HOH HOH . E 5 HOH A 2 602 26 HOH HOH . E 5 HOH A 3 603 25 HOH HOH . E 5 HOH A 4 604 30 HOH HOH . E 5 HOH A 5 605 2 HOH HOH . E 5 HOH A 6 606 6 HOH HOH . E 5 HOH A 7 607 9 HOH HOH . E 5 HOH A 8 608 29 HOH HOH . E 5 HOH A 9 609 23 HOH HOH . E 5 HOH A 10 610 12 HOH HOH . E 5 HOH A 11 611 31 HOH HOH . E 5 HOH A 12 612 7 HOH HOH . E 5 HOH A 13 613 18 HOH HOH . E 5 HOH A 14 614 14 HOH HOH . E 5 HOH A 15 615 10 HOH HOH . E 5 HOH A 16 616 32 HOH HOH . E 5 HOH A 17 617 19 HOH HOH . E 5 HOH A 18 618 16 HOH HOH . E 5 HOH A 19 619 3 HOH HOH . E 5 HOH A 20 620 11 HOH HOH . E 5 HOH A 21 621 21 HOH HOH . E 5 HOH A 22 622 5 HOH HOH . E 5 HOH A 23 623 20 HOH HOH . E 5 HOH A 24 624 34 HOH HOH . E 5 HOH A 25 625 27 HOH HOH . E 5 HOH A 26 626 4 HOH HOH . E 5 HOH A 27 627 8 HOH HOH . E 5 HOH A 28 628 28 HOH HOH . E 5 HOH A 29 629 13 HOH HOH . E 5 HOH A 30 630 15 HOH HOH . E 5 HOH A 31 631 17 HOH HOH . E 5 HOH A 32 632 33 HOH HOH . E 5 HOH A 33 633 24 HOH HOH . E 5 HOH A 34 634 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -27.867 12.03 3.785 1 56.18 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . D 4 -28.54 13.068 3.092 1 51.34 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . D 4 -26.775 12.614 4.665 1 77.76 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . D 4 -25.479 12.235 4.162 1 73.44 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . D 4 -26.953 12.32 6.157 1 74.88 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . D 4 -26.009 11.363 6.642 1 71.08 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #