data_7JM7 # _model_server_result.job_id '_UEEvpXB4fgjIvK1Vpjb2w' _model_server_result.datetime_utc '2025-04-10 17:18:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":903}' # _entry.id 7JM7 # _exptl.entry_id 7JM7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 35.453 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JM7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 Q N N ? 8 R N N ? 8 S N N ? 8 AA N N ? 8 BA N N ? 8 CA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG B 505 NAG 3 n E NAG 2 E 2 NAG B 506 NAG 3 n E BMA 3 E 3 BMA B 507 BMA 3 n E MAN 4 E 4 MAN B 508 MAN 3 n E MAN 5 E 5 MAN B 509 MAN 4 n F NAG 1 F 1 NAG B 510 NAG 4 n F NAG 2 F 2 NAG B 511 NAG 4 n G NAG 1 G 1 NAG B 513 NAG 4 n G NAG 2 G 2 NAG B 514 NAG 3 n H NAG 1 H 1 NAG D 505 NAG 3 n H NAG 2 H 2 NAG D 506 NAG 3 n H BMA 3 H 3 BMA D 507 BMA 3 n H MAN 4 H 4 MAN D 508 MAN 3 n H MAN 5 H 5 MAN D 509 MAN 4 n I NAG 1 I 1 NAG D 510 NAG 4 n I NAG 2 I 2 NAG D 511 NAG 4 n J NAG 1 J 1 NAG D 513 NAG 4 n J NAG 2 J 2 NAG D 514 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 B CYS 84 1_555 A SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 112 B CYS 112 1_555 A SG CYS 171 B CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 174 B CYS 174 1_555 A SG CYS 255 B CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 199 B CYS 199 1_555 A SG CYS 224 B CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 221 B CYS 221 1_555 A SG CYS 275 B CYS 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 438 A CYS 438 1_555 B SG CYS 454 A CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 C SG CYS 84 D CYS 84 1_555 C SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 C SG CYS 112 D CYS 112 1_555 C SG CYS 171 D CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 C SG CYS 174 D CYS 174 1_555 C SG CYS 255 D CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 C SG CYS 199 D CYS 199 1_555 C SG CYS 224 D CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 C SG CYS 221 D CYS 221 1_555 C SG CYS 275 D CYS 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 D SG CYS 438 C CYS 438 1_555 D SG CYS 454 C CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 128 B ASN 128 1_555 L C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 184 B ASN 184 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 C ND2 ASN 128 D ASN 128 1_555 V C1 NAG . D NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 C ND2 ASN 184 D ASN 184 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale8 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale9 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale10 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale11 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale12 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale13 H O3 BMA . H BMA 3 1_555 H C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale14 H O6 BMA . H BMA 3 1_555 H C1 MAN . H MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale15 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale16 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? metalc ? metalc1 B OE2 GLU 95 A GLU 95 1_555 P MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc2 O O1B ATP . A ATP 901 1_555 P MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc3 D OE2 GLU 95 C GLU 95 1_555 Z MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc4 Y O1B ATP . C ATP 901 1_555 Z MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7JM7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 5 NAG B 1 501 501 NAG NAG . L 5 NAG B 1 502 502 NAG NAG . M 5 NAG B 1 503 504 NAG NAG . N 5 NAG B 1 504 512 NAG NAG . O 6 ATP A 1 901 901 ATP ATP . P 7 MG A 1 902 902 MG MG . Q 8 CL A 1 903 903 CL CL . R 8 CL A 1 904 904 CL CL . S 8 CL A 1 905 905 CL CL . T 9 0J1 A 1 906 1001 0J1 0J1 . U 5 NAG D 1 501 501 NAG NAG . V 5 NAG D 1 502 502 NAG NAG . W 5 NAG D 1 503 504 NAG NAG . X 5 NAG D 1 504 512 NAG NAG . Y 6 ATP C 1 901 901 ATP ATP . Z 7 MG C 1 902 902 MG MG . AA 8 CL C 1 903 903 CL CL . BA 8 CL C 1 904 904 CL CL . CA 8 CL C 1 905 905 CL CL . DA 9 0J1 C 1 906 1001 0J1 0J1 . EA 10 HOH A 1 1001 906 HOH HOH . EA 10 HOH A 2 1002 915 HOH HOH . EA 10 HOH A 3 1003 919 HOH HOH . EA 10 HOH A 4 1004 917 HOH HOH . EA 10 HOH A 5 1005 918 HOH HOH . EA 10 HOH A 6 1006 907 HOH HOH . EA 10 HOH A 7 1007 914 HOH HOH . EA 10 HOH A 8 1008 910 HOH HOH . EA 10 HOH A 9 1009 911 HOH HOH . EA 10 HOH A 10 1010 909 HOH HOH . EA 10 HOH A 11 1011 908 HOH HOH . EA 10 HOH A 12 1012 912 HOH HOH . EA 10 HOH A 13 1013 913 HOH HOH . EA 10 HOH A 14 1014 916 HOH HOH . EA 10 HOH A 15 1015 921 HOH HOH . EA 10 HOH A 16 1016 923 HOH HOH . EA 10 HOH A 17 1017 922 HOH HOH . EA 10 HOH A 18 1018 920 HOH HOH . FA 10 HOH C 1 1001 906 HOH HOH . FA 10 HOH C 2 1002 915 HOH HOH . FA 10 HOH C 3 1003 919 HOH HOH . FA 10 HOH C 4 1004 917 HOH HOH . FA 10 HOH C 5 1005 918 HOH HOH . FA 10 HOH C 6 1006 907 HOH HOH . FA 10 HOH C 7 1007 914 HOH HOH . FA 10 HOH C 8 1008 910 HOH HOH . FA 10 HOH C 9 1009 911 HOH HOH . FA 10 HOH C 10 1010 909 HOH HOH . FA 10 HOH C 11 1011 908 HOH HOH . FA 10 HOH C 12 1012 912 HOH HOH . FA 10 HOH C 13 1013 913 HOH HOH . FA 10 HOH C 14 1014 916 HOH HOH . FA 10 HOH C 15 1015 921 HOH HOH . FA 10 HOH C 16 1016 923 HOH HOH . FA 10 HOH C 17 1017 920 HOH HOH . FA 10 HOH C 18 1018 922 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 8 _atom_site.Cartn_x 157.197 _atom_site.Cartn_y 137.937 _atom_site.Cartn_z 126.638 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 903 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #