data_7JME # _model_server_result.job_id oARvbpA6bPAFlxRI72_NPQ _model_server_result.datetime_utc '2025-01-29 00:22:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jme # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7JME # _exptl.entry_id 7JME _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.351 _cell.angle_gamma 90 _cell.entry_id 7JME _cell.length_a 37.21 _cell.length_b 33.036 _cell.length_c 60.476 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JME _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 7JME _atom_sites.fract_transf_matrix[1][1] 0.026874 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002991 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CMP A 1 401 401 CMP CMP . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 10 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 11 HOH HOH . C 3 HOH A 5 505 4 HOH HOH . C 3 HOH A 6 506 2 HOH HOH . C 3 HOH A 7 507 17 HOH HOH . C 3 HOH A 8 508 18 HOH HOH . C 3 HOH A 9 509 22 HOH HOH . C 3 HOH A 10 510 12 HOH HOH . C 3 HOH A 11 511 8 HOH HOH . C 3 HOH A 12 512 28 HOH HOH . C 3 HOH A 13 513 20 HOH HOH . C 3 HOH A 14 514 9 HOH HOH . C 3 HOH A 15 515 13 HOH HOH . C 3 HOH A 16 516 57 HOH HOH . C 3 HOH A 17 517 23 HOH HOH . C 3 HOH A 18 518 15 HOH HOH . C 3 HOH A 19 519 6 HOH HOH . C 3 HOH A 20 520 26 HOH HOH . C 3 HOH A 21 521 30 HOH HOH . C 3 HOH A 22 522 16 HOH HOH . C 3 HOH A 23 523 37 HOH HOH . C 3 HOH A 24 524 5 HOH HOH . C 3 HOH A 25 525 19 HOH HOH . C 3 HOH A 26 526 39 HOH HOH . C 3 HOH A 27 527 42 HOH HOH . C 3 HOH A 28 528 24 HOH HOH . C 3 HOH A 29 529 82 HOH HOH . C 3 HOH A 30 530 68 HOH HOH . C 3 HOH A 31 531 7 HOH HOH . C 3 HOH A 32 532 36 HOH HOH . C 3 HOH A 33 533 40 HOH HOH . C 3 HOH A 34 534 29 HOH HOH . C 3 HOH A 35 535 35 HOH HOH . C 3 HOH A 36 536 56 HOH HOH . C 3 HOH A 37 537 33 HOH HOH . C 3 HOH A 38 538 45 HOH HOH . C 3 HOH A 39 539 50 HOH HOH . C 3 HOH A 40 540 54 HOH HOH . C 3 HOH A 41 541 91 HOH HOH . C 3 HOH A 42 542 31 HOH HOH . C 3 HOH A 43 543 58 HOH HOH . C 3 HOH A 44 544 43 HOH HOH . C 3 HOH A 45 545 41 HOH HOH . C 3 HOH A 46 546 76 HOH HOH . C 3 HOH A 47 547 25 HOH HOH . C 3 HOH A 48 548 55 HOH HOH . C 3 HOH A 49 549 52 HOH HOH . C 3 HOH A 50 550 63 HOH HOH . C 3 HOH A 51 551 48 HOH HOH . C 3 HOH A 52 552 34 HOH HOH . C 3 HOH A 53 553 78 HOH HOH . C 3 HOH A 54 554 27 HOH HOH . C 3 HOH A 55 555 46 HOH HOH . C 3 HOH A 56 556 38 HOH HOH . C 3 HOH A 57 557 53 HOH HOH . C 3 HOH A 58 558 60 HOH HOH . C 3 HOH A 59 559 75 HOH HOH . C 3 HOH A 60 560 59 HOH HOH . C 3 HOH A 61 561 44 HOH HOH . C 3 HOH A 62 562 21 HOH HOH . C 3 HOH A 63 563 32 HOH HOH . C 3 HOH A 64 564 79 HOH HOH . C 3 HOH A 65 565 51 HOH HOH . C 3 HOH A 66 566 69 HOH HOH . C 3 HOH A 67 567 88 HOH HOH . C 3 HOH A 68 568 65 HOH HOH . C 3 HOH A 69 569 14 HOH HOH . C 3 HOH A 70 570 73 HOH HOH . C 3 HOH A 71 571 67 HOH HOH . C 3 HOH A 72 572 81 HOH HOH . C 3 HOH A 73 573 93 HOH HOH . C 3 HOH A 74 574 64 HOH HOH . C 3 HOH A 75 575 70 HOH HOH . C 3 HOH A 76 576 62 HOH HOH . C 3 HOH A 77 577 72 HOH HOH . C 3 HOH A 78 578 66 HOH HOH . C 3 HOH A 79 579 86 HOH HOH . C 3 HOH A 80 580 74 HOH HOH . C 3 HOH A 81 581 49 HOH HOH . C 3 HOH A 82 582 97 HOH HOH . C 3 HOH A 83 583 71 HOH HOH . C 3 HOH A 84 584 47 HOH HOH . C 3 HOH A 85 585 80 HOH HOH . C 3 HOH A 86 586 94 HOH HOH . C 3 HOH A 87 587 96 HOH HOH . C 3 HOH A 88 588 84 HOH HOH . C 3 HOH A 89 589 61 HOH HOH . C 3 HOH A 90 590 85 HOH HOH . C 3 HOH A 91 591 87 HOH HOH . C 3 HOH A 92 592 83 HOH HOH . C 3 HOH A 93 593 92 HOH HOH . C 3 HOH A 94 594 95 HOH HOH . C 3 HOH A 95 595 89 HOH HOH . C 3 HOH A 96 596 90 HOH HOH . C 3 HOH A 97 597 116 HOH HOH . C 3 HOH A 98 598 103 HOH HOH . C 3 HOH A 99 599 100 HOH HOH . C 3 HOH A 100 600 98 HOH HOH . C 3 HOH A 101 601 104 HOH HOH . C 3 HOH A 102 602 101 HOH HOH . C 3 HOH A 103 603 77 HOH HOH . C 3 HOH A 104 604 102 HOH HOH . C 3 HOH A 105 605 106 HOH HOH . C 3 HOH A 106 606 105 HOH HOH . C 3 HOH A 107 607 99 HOH HOH . C 3 HOH A 108 608 113 HOH HOH . C 3 HOH A 109 609 108 HOH HOH . C 3 HOH A 110 610 111 HOH HOH . C 3 HOH A 111 611 107 HOH HOH . C 3 HOH A 112 612 110 HOH HOH . C 3 HOH A 113 613 112 HOH HOH . C 3 HOH A 114 614 119 HOH HOH . C 3 HOH A 115 615 109 HOH HOH . C 3 HOH A 116 616 118 HOH HOH . C 3 HOH A 117 617 114 HOH HOH . C 3 HOH A 118 618 117 HOH HOH . C 3 HOH A 119 619 120 HOH HOH . C 3 HOH A 120 620 121 HOH HOH . C 3 HOH A 121 621 122 HOH HOH . C 3 HOH A 122 622 123 HOH HOH . C 3 HOH A 123 623 115 HOH HOH . C 3 HOH A 124 624 125 HOH HOH . C 3 HOH A 125 625 124 HOH HOH . C 3 HOH A 126 626 127 HOH HOH . C 3 HOH A 127 627 126 HOH HOH . C 3 HOH A 128 628 128 HOH HOH . C 3 HOH A 129 629 135 HOH HOH . C 3 HOH A 130 630 130 HOH HOH . C 3 HOH A 131 631 131 HOH HOH . C 3 HOH A 132 632 132 HOH HOH . C 3 HOH A 133 633 134 HOH HOH . C 3 HOH A 134 634 133 HOH HOH . C 3 HOH A 135 635 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . B 2 4.41 -10.016 22.8 0.72 13.78 ? P CMP 401 A 1 HETATM 2 O O1P CMP . . . B 2 3.632 -9.756 21.587 0.72 15.13 ? O1P CMP 401 A 1 HETATM 3 O O2P CMP . . . B 2 3.899 -11.011 23.772 0.72 18.23 ? O2P CMP 401 A 1 HETATM 4 O O5' CMP . . . B 2 4.668 -8.689 23.665 0.72 13.04 ? O5' CMP 401 A 1 HETATM 5 C C5' CMP . . . B 2 5.715 -8.625 24.631 0.72 13.52 ? C5' CMP 401 A 1 HETATM 6 C C4' CMP . . . B 2 6.946 -9.051 23.912 0.72 14.28 ? C4' CMP 401 A 1 HETATM 7 O O4' CMP . . . B 2 8.105 -9.135 24.721 0.72 16.94 ? O4' CMP 401 A 1 HETATM 8 C C3' CMP . . . B 2 6.849 -10.439 23.359 0.72 16.58 ? C3' CMP 401 A 1 HETATM 9 O O3' CMP . . . B 2 5.888 -10.466 22.33 0.72 13.26 ? O3' CMP 401 A 1 HETATM 10 C C2' CMP . . . B 2 8.306 -10.737 22.96 0.72 12.02 ? C2' CMP 401 A 1 HETATM 11 O O2' CMP . . . B 2 8.585 -10.213 21.697 0.72 12.56 ? O2' CMP 401 A 1 HETATM 12 C C1' CMP . . . B 2 9.07 -9.894 23.996 0.72 14.3 ? C1' CMP 401 A 1 HETATM 13 N N9 CMP . . . B 2 9.87 -10.677 24.955 0.72 14.23 ? N9 CMP 401 A 1 HETATM 14 C C8 CMP . . . B 2 10.961 -10.188 25.632 0.72 16 ? C8 CMP 401 A 1 HETATM 15 N N7 CMP . . . B 2 11.492 -11.057 26.448 0.72 16.99 ? N7 CMP 401 A 1 HETATM 16 C C5 CMP . . . B 2 10.688 -12.181 26.326 0.72 18.58 ? C5 CMP 401 A 1 HETATM 17 C C6 CMP . . . B 2 10.726 -13.438 26.956 0.72 23.92 ? C6 CMP 401 A 1 HETATM 18 N N6 CMP . . . B 2 11.654 -13.787 27.845 0.72 28.73 ? N6 CMP 401 A 1 HETATM 19 N N1 CMP . . . B 2 9.773 -14.338 26.615 0.72 21.19 ? N1 CMP 401 A 1 HETATM 20 C C2 CMP . . . B 2 8.844 -13.981 25.72 0.72 23.63 ? C2 CMP 401 A 1 HETATM 21 N N3 CMP . . . B 2 8.706 -12.827 25.073 0.72 22.09 ? N3 CMP 401 A 1 HETATM 22 C C4 CMP . . . B 2 9.667 -11.955 25.424 0.72 19.13 ? C4 CMP 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #