data_7JMI # _model_server_result.job_id 5_NxcB_C2HkCiIIZOaC2mQ _model_server_result.datetime_utc '2024-11-22 22:04:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":5102}' # _entry.id 7JMI # _exptl.entry_id 7JMI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JMI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 L N N ? 4 N N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE2 GLU 3543 B GLU 3893 1_555 J CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? metalc ? metalc2 B OE2 GLU 3617 B GLU 3967 1_555 J CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? metalc ? metalc3 B SG CYS 4608 B CYS 4958 1_555 I ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc4 B N CYS 4611 B CYS 4961 1_555 I ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc5 B SG CYS 4611 B CYS 4961 1_555 I ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc6 B ND1 HIS 4633 B HIS 4983 1_555 I ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc7 B O THR 4651 B THR 5001 1_555 J CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc8 B O HIS 4653 B HIS 5003 1_555 J CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? metalc ? metalc9 C OE2 GLU 3543 E GLU 3893 1_555 L CA CA . E CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc10 C OE2 GLU 3617 E GLU 3967 1_555 L CA CA . E CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc11 C SG CYS 4608 E CYS 4958 1_555 K ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc12 C N CYS 4611 E CYS 4961 1_555 K ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc13 C SG CYS 4611 E CYS 4961 1_555 K ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc14 C ND1 HIS 4633 E HIS 4983 1_555 K ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc15 C O THR 4651 E THR 5001 1_555 L CA CA . E CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc16 E OE2 GLU 3543 G GLU 3893 1_555 N CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.155 ? metalc ? metalc17 E OE2 GLU 3617 G GLU 3967 1_555 N CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc18 E SG CYS 4608 G CYS 4958 1_555 M ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc19 E N CYS 4611 G CYS 4961 1_555 M ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc20 E SG CYS 4611 G CYS 4961 1_555 M ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc21 E ND1 HIS 4633 G HIS 4983 1_555 M ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc22 E O THR 4651 G THR 5001 1_555 N CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc23 G OE2 GLU 3543 I GLU 3893 1_555 P CA CA . I CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? metalc ? metalc24 G OE2 GLU 3617 I GLU 3967 1_555 P CA CA . I CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? metalc ? metalc25 G SG CYS 4608 I CYS 4958 1_555 O ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc26 G N CYS 4611 I CYS 4961 1_555 O ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc27 G SG CYS 4611 I CYS 4961 1_555 O ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc28 G ND1 HIS 4633 I HIS 4983 1_555 O ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc29 G O THR 4651 I THR 5001 1_555 P CA CA . I CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7JMI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ZN B 1 5101 5101 ZN ZN . J 4 CA B 1 5102 5102 CA CA . K 3 ZN E 1 5101 5101 ZN ZN . L 4 CA E 1 5102 5102 CA CA . M 3 ZN G 1 5101 5101 ZN ZN . N 4 CA G 1 5102 5102 CA CA . O 3 ZN I 1 5101 5101 ZN ZN . P 4 CA I 1 5102 5102 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 4 _atom_site.Cartn_x 286.082 _atom_site.Cartn_y 279.897 _atom_site.Cartn_z 243.832 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 1.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 5102 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 450 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #