data_7JMI
#
_model_server_result.job_id            LD5A81nsyVXdwgcotejV9Q 
_model_server_result.datetime_utc      '2024-11-04 22:15:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jmi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":5102}' 
#
_entry.id    7JMI 
#
_exptl.entry_id    7JMI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7JMI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JMI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 L N N 
? 4 N N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OE2 GLU 3543 B GLU 3893 1_555 J CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? 
metalc ? metalc2 B OE2 GLU 3617 B GLU 3967 1_555 J CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? 
metalc ? metalc3 B SG CYS 4608 B CYS 4958 1_555 I ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc4 B N CYS 4611 B CYS 4961 1_555 I ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc5 B SG CYS 4611 B CYS 4961 1_555 I ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc6 B ND1 HIS 4633 B HIS 4983 1_555 I ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc7 B O THR 4651 B THR 5001 1_555 J CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? 
metalc ? metalc8 B O HIS 4653 B HIS 5003 1_555 J CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? 
metalc ? metalc9 C OE2 GLU 3543 E GLU 3893 1_555 L CA CA . E CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? 
metalc ? metalc10 C OE2 GLU 3617 E GLU 3967 1_555 L CA CA . E CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? 
metalc ? metalc11 C SG CYS 4608 E CYS 4958 1_555 K ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc12 C N CYS 4611 E CYS 4961 1_555 K ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc13 C SG CYS 4611 E CYS 4961 1_555 K ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc14 C ND1 HIS 4633 E HIS 4983 1_555 K ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc15 C O THR 4651 E THR 5001 1_555 L CA CA . E CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc16 E OE2 GLU 3543 G GLU 3893 1_555 N CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.155 ? 
metalc ? metalc17 E OE2 GLU 3617 G GLU 3967 1_555 N CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? 
metalc ? metalc18 E SG CYS 4608 G CYS 4958 1_555 M ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc19 E N CYS 4611 G CYS 4961 1_555 M ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc20 E SG CYS 4611 G CYS 4961 1_555 M ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
metalc ? metalc21 E ND1 HIS 4633 G HIS 4983 1_555 M ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc22 E O THR 4651 G THR 5001 1_555 N CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc23 G OE2 GLU 3543 I GLU 3893 1_555 P CA CA . I CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? 
metalc ? metalc24 G OE2 GLU 3617 I GLU 3967 1_555 P CA CA . I CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? 
metalc ? metalc25 G SG CYS 4608 I CYS 4958 1_555 O ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc26 G N CYS 4611 I CYS 4961 1_555 O ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc27 G SG CYS 4611 I CYS 4961 1_555 O ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc28 G ND1 HIS 4633 I HIS 4983 1_555 O ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc29 G O THR 4651 I THR 5001 1_555 P CA CA . I CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7JMI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ZN B 1 5101 5101 ZN ZN . 
J 4 CA B 1 5102 5102 CA CA . 
K 3 ZN E 1 5101 5101 ZN ZN . 
L 4 CA E 1 5102 5102 CA CA . 
M 3 ZN G 1 5101 5101 ZN ZN . 
N 4 CA G 1 5102 5102 CA CA . 
O 3 ZN I 1 5101 5101 ZN ZN . 
P 4 CA I 1 5102 5102 CA CA . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         P 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               216.064 
_atom_site.Cartn_y               220.432 
_atom_site.Cartn_z               243.842 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        2.17 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           5102 
_atom_site.auth_asym_id          I 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              120 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    281 
_model_server_stats.query_time_ms           550 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#