data_7JMO # _model_server_result.job_id CkZpujzGUxhEZy8ttwhF1w _model_server_result.datetime_utc '2024-11-21 09:02:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jmo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 7JMO # _exptl.entry_id 7JMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.58 _cell.angle_gamma 90 _cell.entry_id 7JMO _cell.length_a 197.246 _cell.length_b 84.678 _cell.length_c 57.301 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 336 1_555 A SG CYS 43 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 61 A CYS 379 1_555 A SG CYS 114 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 73 A CYS 391 1_555 A SG CYS 207 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 A SG CYS 162 A CYS 480 1_555 A SG CYS 170 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? disulf ? disulf6 B SG CYS 145 H CYS 140 1_555 B SG CYS 201 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 C SG CYS 23 L CYS 23 1_555 C SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf8 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 25 A ASN 343 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7JMO _atom_sites.fract_transf_matrix[1][1] 0.00507 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000856 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 601 527 NAG NAG . E 5 HOH A 1 701 5 HOH HOH . E 5 HOH A 2 702 116 HOH HOH . E 5 HOH A 3 703 76 HOH HOH . E 5 HOH A 4 704 111 HOH HOH . E 5 HOH A 5 705 2 HOH HOH . E 5 HOH A 6 706 28 HOH HOH . E 5 HOH A 7 707 59 HOH HOH . E 5 HOH A 8 708 49 HOH HOH . E 5 HOH A 9 709 21 HOH HOH . E 5 HOH A 10 710 47 HOH HOH . E 5 HOH A 11 711 74 HOH HOH . E 5 HOH A 12 712 6 HOH HOH . E 5 HOH A 13 713 112 HOH HOH . E 5 HOH A 14 714 12 HOH HOH . E 5 HOH A 15 715 24 HOH HOH . E 5 HOH A 16 716 51 HOH HOH . E 5 HOH A 17 717 18 HOH HOH . E 5 HOH A 18 718 102 HOH HOH . E 5 HOH A 19 719 48 HOH HOH . E 5 HOH A 20 720 107 HOH HOH . E 5 HOH A 21 721 1 HOH HOH . E 5 HOH A 22 722 29 HOH HOH . E 5 HOH A 23 723 122 HOH HOH . E 5 HOH A 24 724 82 HOH HOH . E 5 HOH A 25 725 69 HOH HOH . E 5 HOH A 26 726 109 HOH HOH . E 5 HOH A 27 727 70 HOH HOH . E 5 HOH A 28 728 79 HOH HOH . E 5 HOH A 29 729 40 HOH HOH . E 5 HOH A 30 730 46 HOH HOH . E 5 HOH A 31 731 100 HOH HOH . E 5 HOH A 32 732 85 HOH HOH . E 5 HOH A 33 733 87 HOH HOH . E 5 HOH A 34 734 27 HOH HOH . E 5 HOH A 35 735 60 HOH HOH . E 5 HOH A 36 736 86 HOH HOH . E 5 HOH A 37 737 52 HOH HOH . E 5 HOH A 38 738 104 HOH HOH . F 5 HOH H 1 301 97 HOH HOH . F 5 HOH H 2 302 99 HOH HOH . F 5 HOH H 3 303 3 HOH HOH . F 5 HOH H 4 304 92 HOH HOH . F 5 HOH H 5 305 90 HOH HOH . F 5 HOH H 6 306 34 HOH HOH . F 5 HOH H 7 307 8 HOH HOH . F 5 HOH H 8 308 54 HOH HOH . F 5 HOH H 9 309 56 HOH HOH . F 5 HOH H 10 310 78 HOH HOH . F 5 HOH H 11 311 73 HOH HOH . F 5 HOH H 12 312 14 HOH HOH . F 5 HOH H 13 313 10 HOH HOH . F 5 HOH H 14 314 67 HOH HOH . F 5 HOH H 15 315 7 HOH HOH . F 5 HOH H 16 316 32 HOH HOH . F 5 HOH H 17 317 39 HOH HOH . F 5 HOH H 18 318 33 HOH HOH . F 5 HOH H 19 319 58 HOH HOH . F 5 HOH H 20 320 64 HOH HOH . F 5 HOH H 21 321 84 HOH HOH . F 5 HOH H 22 322 35 HOH HOH . F 5 HOH H 23 323 65 HOH HOH . F 5 HOH H 24 324 53 HOH HOH . F 5 HOH H 25 325 42 HOH HOH . F 5 HOH H 26 326 16 HOH HOH . F 5 HOH H 27 327 105 HOH HOH . F 5 HOH H 28 328 91 HOH HOH . F 5 HOH H 29 329 37 HOH HOH . F 5 HOH H 30 330 94 HOH HOH . F 5 HOH H 31 331 31 HOH HOH . F 5 HOH H 32 332 30 HOH HOH . F 5 HOH H 33 333 36 HOH HOH . F 5 HOH H 34 334 81 HOH HOH . F 5 HOH H 35 335 98 HOH HOH . F 5 HOH H 36 336 25 HOH HOH . F 5 HOH H 37 337 101 HOH HOH . F 5 HOH H 38 338 62 HOH HOH . F 5 HOH H 39 339 113 HOH HOH . F 5 HOH H 40 340 20 HOH HOH . F 5 HOH H 41 341 9 HOH HOH . F 5 HOH H 42 342 115 HOH HOH . F 5 HOH H 43 343 114 HOH HOH . F 5 HOH H 44 344 22 HOH HOH . F 5 HOH H 45 345 124 HOH HOH . G 5 HOH L 1 301 117 HOH HOH . G 5 HOH L 2 302 95 HOH HOH . G 5 HOH L 3 303 121 HOH HOH . G 5 HOH L 4 304 89 HOH HOH . G 5 HOH L 5 305 61 HOH HOH . G 5 HOH L 6 306 38 HOH HOH . G 5 HOH L 7 307 26 HOH HOH . G 5 HOH L 8 308 118 HOH HOH . G 5 HOH L 9 309 96 HOH HOH . G 5 HOH L 10 310 17 HOH HOH . G 5 HOH L 11 311 83 HOH HOH . G 5 HOH L 12 312 63 HOH HOH . G 5 HOH L 13 313 19 HOH HOH . G 5 HOH L 14 314 71 HOH HOH . G 5 HOH L 15 315 120 HOH HOH . G 5 HOH L 16 316 57 HOH HOH . G 5 HOH L 17 317 4 HOH HOH . G 5 HOH L 18 318 123 HOH HOH . G 5 HOH L 19 319 108 HOH HOH . G 5 HOH L 20 320 72 HOH HOH . G 5 HOH L 21 321 66 HOH HOH . G 5 HOH L 22 322 43 HOH HOH . G 5 HOH L 23 323 15 HOH HOH . G 5 HOH L 24 324 41 HOH HOH . G 5 HOH L 25 325 88 HOH HOH . G 5 HOH L 26 326 11 HOH HOH . G 5 HOH L 27 327 23 HOH HOH . G 5 HOH L 28 328 55 HOH HOH . G 5 HOH L 29 329 13 HOH HOH . G 5 HOH L 30 330 44 HOH HOH . G 5 HOH L 31 331 45 HOH HOH . G 5 HOH L 32 332 50 HOH HOH . G 5 HOH L 33 333 103 HOH HOH . G 5 HOH L 34 334 119 HOH HOH . G 5 HOH L 35 335 106 HOH HOH . G 5 HOH L 36 336 75 HOH HOH . G 5 HOH L 37 337 68 HOH HOH . G 5 HOH L 38 338 80 HOH HOH . G 5 HOH L 39 339 77 HOH HOH . G 5 HOH L 40 340 93 HOH HOH . G 5 HOH L 41 341 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 -80.227 21.22 25.486 1 30 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . D 4 -81.55 21.441 24.779 1 30 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . D 4 -81.685 22.902 24.383 1 30 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . D 4 -81.546 23.751 25.632 1 30 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . D 4 -80.219 23.452 26.313 1 30 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . D 4 -80.064 24.273 27.585 1 30 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . D 4 -82.5 20.57 22.698 1 30 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . D 4 -82.117 21.256 21.425 1 30 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . D 4 -81.562 20.559 23.632 1 30 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . D 4 -82.973 23.144 23.815 1 30 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . D 4 -81.605 25.134 25.277 1 30 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . D 4 -80.14 22.064 26.629 1 30 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . D 4 -81.078 23.898 28.521 1 30 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . D 4 -83.587 20.044 22.864 1 30 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #