data_7JMO
#
_model_server_result.job_id            gYNMUzbdMDzfL9k8d5NxGg 
_model_server_result.datetime_utc      '2024-10-12 04:25:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jmo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    7JMO 
#
_exptl.entry_id    7JMO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.58 
_cell.angle_gamma         90 
_cell.entry_id            7JMO 
_cell.length_a            197.246 
_cell.length_b            84.678 
_cell.length_c            57.301 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JMO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 18 A CYS 336 1_555 A SG CYS 43 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 61 A CYS 379 1_555 A SG CYS 114 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 73 A CYS 391 1_555 A SG CYS 207 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf4 A SG CYS 162 A CYS 480 1_555 A SG CYS 170 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
disulf ? disulf6 B SG CYS 145 H CYS 140 1_555 B SG CYS 201 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 C SG CYS 23 L CYS 23 1_555 C SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf8 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 25 A ASN 343 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7JMO 
_atom_sites.fract_transf_matrix[1][1]    0.00507 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000856 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011809 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017698 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG A 1 601 527 NAG NAG . 
E 5 HOH A 1 701 5 HOH HOH . 
E 5 HOH A 2 702 116 HOH HOH . 
E 5 HOH A 3 703 76 HOH HOH . 
E 5 HOH A 4 704 111 HOH HOH . 
E 5 HOH A 5 705 2 HOH HOH . 
E 5 HOH A 6 706 28 HOH HOH . 
E 5 HOH A 7 707 59 HOH HOH . 
E 5 HOH A 8 708 49 HOH HOH . 
E 5 HOH A 9 709 21 HOH HOH . 
E 5 HOH A 10 710 47 HOH HOH . 
E 5 HOH A 11 711 74 HOH HOH . 
E 5 HOH A 12 712 6 HOH HOH . 
E 5 HOH A 13 713 112 HOH HOH . 
E 5 HOH A 14 714 12 HOH HOH . 
E 5 HOH A 15 715 24 HOH HOH . 
E 5 HOH A 16 716 51 HOH HOH . 
E 5 HOH A 17 717 18 HOH HOH . 
E 5 HOH A 18 718 102 HOH HOH . 
E 5 HOH A 19 719 48 HOH HOH . 
E 5 HOH A 20 720 107 HOH HOH . 
E 5 HOH A 21 721 1 HOH HOH . 
E 5 HOH A 22 722 29 HOH HOH . 
E 5 HOH A 23 723 122 HOH HOH . 
E 5 HOH A 24 724 82 HOH HOH . 
E 5 HOH A 25 725 69 HOH HOH . 
E 5 HOH A 26 726 109 HOH HOH . 
E 5 HOH A 27 727 70 HOH HOH . 
E 5 HOH A 28 728 79 HOH HOH . 
E 5 HOH A 29 729 40 HOH HOH . 
E 5 HOH A 30 730 46 HOH HOH . 
E 5 HOH A 31 731 100 HOH HOH . 
E 5 HOH A 32 732 85 HOH HOH . 
E 5 HOH A 33 733 87 HOH HOH . 
E 5 HOH A 34 734 27 HOH HOH . 
E 5 HOH A 35 735 60 HOH HOH . 
E 5 HOH A 36 736 86 HOH HOH . 
E 5 HOH A 37 737 52 HOH HOH . 
E 5 HOH A 38 738 104 HOH HOH . 
F 5 HOH H 1 301 97 HOH HOH . 
F 5 HOH H 2 302 99 HOH HOH . 
F 5 HOH H 3 303 3 HOH HOH . 
F 5 HOH H 4 304 92 HOH HOH . 
F 5 HOH H 5 305 90 HOH HOH . 
F 5 HOH H 6 306 34 HOH HOH . 
F 5 HOH H 7 307 8 HOH HOH . 
F 5 HOH H 8 308 54 HOH HOH . 
F 5 HOH H 9 309 56 HOH HOH . 
F 5 HOH H 10 310 78 HOH HOH . 
F 5 HOH H 11 311 73 HOH HOH . 
F 5 HOH H 12 312 14 HOH HOH . 
F 5 HOH H 13 313 10 HOH HOH . 
F 5 HOH H 14 314 67 HOH HOH . 
F 5 HOH H 15 315 7 HOH HOH . 
F 5 HOH H 16 316 32 HOH HOH . 
F 5 HOH H 17 317 39 HOH HOH . 
F 5 HOH H 18 318 33 HOH HOH . 
F 5 HOH H 19 319 58 HOH HOH . 
F 5 HOH H 20 320 64 HOH HOH . 
F 5 HOH H 21 321 84 HOH HOH . 
F 5 HOH H 22 322 35 HOH HOH . 
F 5 HOH H 23 323 65 HOH HOH . 
F 5 HOH H 24 324 53 HOH HOH . 
F 5 HOH H 25 325 42 HOH HOH . 
F 5 HOH H 26 326 16 HOH HOH . 
F 5 HOH H 27 327 105 HOH HOH . 
F 5 HOH H 28 328 91 HOH HOH . 
F 5 HOH H 29 329 37 HOH HOH . 
F 5 HOH H 30 330 94 HOH HOH . 
F 5 HOH H 31 331 31 HOH HOH . 
F 5 HOH H 32 332 30 HOH HOH . 
F 5 HOH H 33 333 36 HOH HOH . 
F 5 HOH H 34 334 81 HOH HOH . 
F 5 HOH H 35 335 98 HOH HOH . 
F 5 HOH H 36 336 25 HOH HOH . 
F 5 HOH H 37 337 101 HOH HOH . 
F 5 HOH H 38 338 62 HOH HOH . 
F 5 HOH H 39 339 113 HOH HOH . 
F 5 HOH H 40 340 20 HOH HOH . 
F 5 HOH H 41 341 9 HOH HOH . 
F 5 HOH H 42 342 115 HOH HOH . 
F 5 HOH H 43 343 114 HOH HOH . 
F 5 HOH H 44 344 22 HOH HOH . 
F 5 HOH H 45 345 124 HOH HOH . 
G 5 HOH L 1 301 117 HOH HOH . 
G 5 HOH L 2 302 95 HOH HOH . 
G 5 HOH L 3 303 121 HOH HOH . 
G 5 HOH L 4 304 89 HOH HOH . 
G 5 HOH L 5 305 61 HOH HOH . 
G 5 HOH L 6 306 38 HOH HOH . 
G 5 HOH L 7 307 26 HOH HOH . 
G 5 HOH L 8 308 118 HOH HOH . 
G 5 HOH L 9 309 96 HOH HOH . 
G 5 HOH L 10 310 17 HOH HOH . 
G 5 HOH L 11 311 83 HOH HOH . 
G 5 HOH L 12 312 63 HOH HOH . 
G 5 HOH L 13 313 19 HOH HOH . 
G 5 HOH L 14 314 71 HOH HOH . 
G 5 HOH L 15 315 120 HOH HOH . 
G 5 HOH L 16 316 57 HOH HOH . 
G 5 HOH L 17 317 4 HOH HOH . 
G 5 HOH L 18 318 123 HOH HOH . 
G 5 HOH L 19 319 108 HOH HOH . 
G 5 HOH L 20 320 72 HOH HOH . 
G 5 HOH L 21 321 66 HOH HOH . 
G 5 HOH L 22 322 43 HOH HOH . 
G 5 HOH L 23 323 15 HOH HOH . 
G 5 HOH L 24 324 41 HOH HOH . 
G 5 HOH L 25 325 88 HOH HOH . 
G 5 HOH L 26 326 11 HOH HOH . 
G 5 HOH L 27 327 23 HOH HOH . 
G 5 HOH L 28 328 55 HOH HOH . 
G 5 HOH L 29 329 13 HOH HOH . 
G 5 HOH L 30 330 44 HOH HOH . 
G 5 HOH L 31 331 45 HOH HOH . 
G 5 HOH L 32 332 50 HOH HOH . 
G 5 HOH L 33 333 103 HOH HOH . 
G 5 HOH L 34 334 119 HOH HOH . 
G 5 HOH L 35 335 106 HOH HOH . 
G 5 HOH L 36 336 75 HOH HOH . 
G 5 HOH L 37 337 68 HOH HOH . 
G 5 HOH L 38 338 80 HOH HOH . 
G 5 HOH L 39 339 77 HOH HOH . 
G 5 HOH L 40 340 93 HOH HOH . 
G 5 HOH L 41 341 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 -80.227 21.22 25.486 1 30 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . D 4 -81.55 21.441 24.779 1 30 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . D 4 -81.685 22.902 24.383 1 30 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . D 4 -81.546 23.751 25.632 1 30 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . D 4 -80.219 23.452 26.313 1 30 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . D 4 -80.064 24.273 27.585 1 30 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . D 4 -82.5 20.57 22.698 1 30 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . D 4 -82.117 21.256 21.425 1 30 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . D 4 -81.562 20.559 23.632 1 30 ? N2 NAG 601 A 1 
HETATM 10 O O3 NAG . . . D 4 -82.973 23.144 23.815 1 30 ? O3 NAG 601 A 1 
HETATM 11 O O4 NAG . . . D 4 -81.605 25.134 25.277 1 30 ? O4 NAG 601 A 1 
HETATM 12 O O5 NAG . . . D 4 -80.14 22.064 26.629 1 30 ? O5 NAG 601 A 1 
HETATM 13 O O6 NAG . . . D 4 -81.078 23.898 28.521 1 30 ? O6 NAG 601 A 1 
HETATM 14 O O7 NAG . . . D 4 -83.587 20.044 22.864 1 30 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#