data_7JMR # _model_server_result.job_id U095uUrhbNQ_TDzKFqY9kQ _model_server_result.datetime_utc '2024-11-28 08:14:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jmr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7JMR # _exptl.entry_id 7JMR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JMR _cell.length_a 98.853 _cell.length_b 98.853 _cell.length_c 62.38 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JMR _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 A,B,C,D,E,F 1 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -49.4265 85.609209 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -98.853 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 84 A ILE 84 1_555 A N MSE 85 A MSE 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 85 A MSE 85 1_555 A N HIS 86 A HIS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C LYS 105 A LYS 105 1_555 A N MSE 106 A MSE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 A C MSE 106 A MSE 106 1_555 A N LYS 107 A LYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 A C ARG 223 A ARG 223 1_555 A N MSE 224 A MSE 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 224 A MSE 224 1_555 A N TYR 225 A TYR 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C GLU 227 A GLU 227 1_555 A N MSE 228 A MSE 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 228 A MSE 228 1_555 A N GLU 229 A GLU 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A OD1 ASP 24 A ASP 24 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc2 A O GLU 88 A GLU 88 1_555 B K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.303 ? metalc ? metalc3 A OE1 GLU 88 A GLU 88 1_555 B K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? metalc ? metalc4 A O GLU 88 A GLU 88 1_555 B K K . A K 301 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc5 A OE1 GLU 88 A GLU 88 1_555 B K K . A K 301 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc6 A OD2 ASP 186 A ASP 186 1_555 D CA CA . A CA 303 6_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc7 A OD1 ASN 230 A ASN 230 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc8 A OD1 ASP 238 A ASP 238 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc9 A OD2 ASP 238 A ASP 238 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc10 A O PHE 240 A PHE 240 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc11 A O HIS 243 A HIS 243 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc12 C CA CA . A CA 302 1_555 F O HOH . A HOH 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc13 C CA CA . A CA 302 1_555 F O HOH . A HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc14 C CA CA . A CA 302 1_555 F O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc15 C CA CA . A CA 302 1_555 F O HOH . A HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc16 D CA CA . A CA 303 1_555 F O HOH . A HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc17 D CA CA . A CA 303 1_555 F O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc18 E CA CA . A CA 304 1_555 F O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc19 E CA CA . A CA 304 1_555 F O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc20 E CA CA . A CA 304 1_555 F O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc21 E CA CA . A CA 304 1_555 F O HOH . A HOH 536 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7JMR _atom_sites.fract_transf_matrix[1][1] 0.010116 _atom_sites.fract_transf_matrix[1][2] 0.00584 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 301 1 K K . C 3 CA A 1 302 2 CA CA . D 3 CA A 1 303 3 CA CA . E 3 CA A 1 304 4 CA CA . F 4 HOH A 1 401 68 HOH HOH . F 4 HOH A 2 402 81 HOH HOH . F 4 HOH A 3 403 141 HOH HOH . F 4 HOH A 4 404 70 HOH HOH . F 4 HOH A 5 405 97 HOH HOH . F 4 HOH A 6 406 124 HOH HOH . F 4 HOH A 7 407 6 HOH HOH . F 4 HOH A 8 408 114 HOH HOH . F 4 HOH A 9 409 35 HOH HOH . F 4 HOH A 10 410 138 HOH HOH . F 4 HOH A 11 411 38 HOH HOH . F 4 HOH A 12 412 89 HOH HOH . F 4 HOH A 13 413 137 HOH HOH . F 4 HOH A 14 414 134 HOH HOH . F 4 HOH A 15 415 8 HOH HOH . F 4 HOH A 16 416 18 HOH HOH . F 4 HOH A 17 417 130 HOH HOH . F 4 HOH A 18 418 58 HOH HOH . F 4 HOH A 19 419 87 HOH HOH . F 4 HOH A 20 420 78 HOH HOH . F 4 HOH A 21 421 96 HOH HOH . F 4 HOH A 22 422 117 HOH HOH . F 4 HOH A 23 423 37 HOH HOH . F 4 HOH A 24 424 61 HOH HOH . F 4 HOH A 25 425 107 HOH HOH . F 4 HOH A 26 426 30 HOH HOH . F 4 HOH A 27 427 53 HOH HOH . F 4 HOH A 28 428 118 HOH HOH . F 4 HOH A 29 429 79 HOH HOH . F 4 HOH A 30 430 26 HOH HOH . F 4 HOH A 31 431 82 HOH HOH . F 4 HOH A 32 432 15 HOH HOH . F 4 HOH A 33 433 48 HOH HOH . F 4 HOH A 34 434 83 HOH HOH . F 4 HOH A 35 435 132 HOH HOH . F 4 HOH A 36 436 50 HOH HOH . F 4 HOH A 37 437 111 HOH HOH . F 4 HOH A 38 438 7 HOH HOH . F 4 HOH A 39 439 11 HOH HOH . F 4 HOH A 40 440 31 HOH HOH . F 4 HOH A 41 441 16 HOH HOH . F 4 HOH A 42 442 43 HOH HOH . F 4 HOH A 43 443 73 HOH HOH . F 4 HOH A 44 444 86 HOH HOH . F 4 HOH A 45 445 71 HOH HOH . F 4 HOH A 46 446 14 HOH HOH . F 4 HOH A 47 447 106 HOH HOH . F 4 HOH A 48 448 12 HOH HOH . F 4 HOH A 49 449 75 HOH HOH . F 4 HOH A 50 450 113 HOH HOH . F 4 HOH A 51 451 99 HOH HOH . F 4 HOH A 52 452 69 HOH HOH . F 4 HOH A 53 453 44 HOH HOH . F 4 HOH A 54 454 64 HOH HOH . F 4 HOH A 55 455 42 HOH HOH . F 4 HOH A 56 456 4 HOH HOH . F 4 HOH A 57 457 60 HOH HOH . F 4 HOH A 58 458 66 HOH HOH . F 4 HOH A 59 459 74 HOH HOH . F 4 HOH A 60 460 65 HOH HOH . F 4 HOH A 61 461 10 HOH HOH . F 4 HOH A 62 462 112 HOH HOH . F 4 HOH A 63 463 32 HOH HOH . F 4 HOH A 64 464 77 HOH HOH . F 4 HOH A 65 465 40 HOH HOH . F 4 HOH A 66 466 100 HOH HOH . F 4 HOH A 67 467 80 HOH HOH . F 4 HOH A 68 468 17 HOH HOH . F 4 HOH A 69 469 52 HOH HOH . F 4 HOH A 70 470 41 HOH HOH . F 4 HOH A 71 471 23 HOH HOH . F 4 HOH A 72 472 13 HOH HOH . F 4 HOH A 73 473 1 HOH HOH . F 4 HOH A 74 474 57 HOH HOH . F 4 HOH A 75 475 103 HOH HOH . F 4 HOH A 76 476 116 HOH HOH . F 4 HOH A 77 477 72 HOH HOH . F 4 HOH A 78 478 63 HOH HOH . F 4 HOH A 79 479 5 HOH HOH . F 4 HOH A 80 480 34 HOH HOH . F 4 HOH A 81 481 49 HOH HOH . F 4 HOH A 82 482 92 HOH HOH . F 4 HOH A 83 483 20 HOH HOH . F 4 HOH A 84 484 143 HOH HOH . F 4 HOH A 85 485 88 HOH HOH . F 4 HOH A 86 486 102 HOH HOH . F 4 HOH A 87 487 21 HOH HOH . F 4 HOH A 88 488 110 HOH HOH . F 4 HOH A 89 489 29 HOH HOH . F 4 HOH A 90 490 94 HOH HOH . F 4 HOH A 91 491 90 HOH HOH . F 4 HOH A 92 492 25 HOH HOH . F 4 HOH A 93 493 76 HOH HOH . F 4 HOH A 94 494 47 HOH HOH . F 4 HOH A 95 495 95 HOH HOH . F 4 HOH A 96 496 121 HOH HOH . F 4 HOH A 97 497 85 HOH HOH . F 4 HOH A 98 498 19 HOH HOH . F 4 HOH A 99 499 115 HOH HOH . F 4 HOH A 100 500 54 HOH HOH . F 4 HOH A 101 501 28 HOH HOH . F 4 HOH A 102 502 131 HOH HOH . F 4 HOH A 103 503 67 HOH HOH . F 4 HOH A 104 504 142 HOH HOH . F 4 HOH A 105 505 51 HOH HOH . F 4 HOH A 106 506 39 HOH HOH . F 4 HOH A 107 507 33 HOH HOH . F 4 HOH A 108 508 91 HOH HOH . F 4 HOH A 109 509 105 HOH HOH . F 4 HOH A 110 510 93 HOH HOH . F 4 HOH A 111 511 55 HOH HOH . F 4 HOH A 112 512 27 HOH HOH . F 4 HOH A 113 513 139 HOH HOH . F 4 HOH A 114 514 84 HOH HOH . F 4 HOH A 115 515 62 HOH HOH . F 4 HOH A 116 516 136 HOH HOH . F 4 HOH A 117 517 2 HOH HOH . F 4 HOH A 118 518 140 HOH HOH . F 4 HOH A 119 519 122 HOH HOH . F 4 HOH A 120 520 125 HOH HOH . F 4 HOH A 121 521 9 HOH HOH . F 4 HOH A 122 522 46 HOH HOH . F 4 HOH A 123 523 22 HOH HOH . F 4 HOH A 124 524 135 HOH HOH . F 4 HOH A 125 525 120 HOH HOH . F 4 HOH A 126 526 128 HOH HOH . F 4 HOH A 127 527 36 HOH HOH . F 4 HOH A 128 528 123 HOH HOH . F 4 HOH A 129 529 59 HOH HOH . F 4 HOH A 130 530 104 HOH HOH . F 4 HOH A 131 531 119 HOH HOH . F 4 HOH A 132 532 127 HOH HOH . F 4 HOH A 133 533 45 HOH HOH . F 4 HOH A 134 534 133 HOH HOH . F 4 HOH A 135 535 56 HOH HOH . F 4 HOH A 136 536 101 HOH HOH . F 4 HOH A 137 537 129 HOH HOH . F 4 HOH A 138 538 108 HOH HOH . F 4 HOH A 139 539 126 HOH HOH . F 4 HOH A 140 540 24 HOH HOH . F 4 HOH A 141 541 3 HOH HOH . F 4 HOH A 142 542 98 HOH HOH . F 4 HOH A 143 543 109 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -18.628 _atom_site.Cartn_y 40.541 _atom_site.Cartn_z 15.202 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 64 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 479 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #