data_7JMV # _model_server_result.job_id FebnkJylvrlr0ytHTEAX3w _model_server_result.datetime_utc '2024-11-23 19:19:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7JMV # _exptl.entry_id 7JMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 155.108 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-NITROCATECHOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JMV _cell.length_a 98.74 _cell.length_b 98.74 _cell.length_c 62.287 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 A,B,C,D,E,F 1 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 49.37 -85.511348 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 98.74 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 24 A ASP 24 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc2 A O GLU 88 A GLU 88 1_555 C K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? metalc ? metalc3 A OE1 GLU 88 A GLU 88 1_555 C K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc4 A O GLU 88 A GLU 88 1_555 C K K . A K 302 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? metalc ? metalc5 A OE1 GLU 88 A GLU 88 1_555 C K K . A K 302 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc6 A OD2 ASP 186 A ASP 186 1_555 D CA CA . A CA 303 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc7 A OD1 ASP 238 A ASP 238 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc8 A OD2 ASP 238 A ASP 238 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc9 A O PHE 240 A PHE 240 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc10 A O HIS 243 A HIS 243 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc11 D CA CA . A CA 303 1_555 F O HOH . A HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc12 D CA CA . A CA 303 1_555 F O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc13 E CA CA . A CA 304 1_555 F O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc14 E CA CA . A CA 304 1_555 F O HOH . A HOH 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc15 E CA CA . A CA 304 1_555 F O HOH . A HOH 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc16 E CA CA . A CA 304 1_555 F O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc17 E CA CA . A CA 304 1_555 F O HOH . A HOH 563 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? # _chem_comp.formula 'C6 H5 N O4' _chem_comp.formula_weight 155.108 _chem_comp.id 4NC _chem_comp.mon_nstd_flag . _chem_comp.name 4-NITROCATECHOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 4NC doub 1 n y C1 C6 4NC sing 2 n y C1 O7 4NC sing 3 n n C2 C3 4NC sing 4 n y C2 O8 4NC sing 5 n n C3 C4 4NC doub 6 n y C3 H3 4NC sing 7 n n C4 C5 4NC sing 8 n y C4 N9 4NC sing 9 n n C5 C6 4NC doub 10 n y C5 H5 4NC sing 11 n n C6 H6 4NC sing 12 n n O7 HO7 4NC sing 13 n n O8 HO8 4NC sing 14 n n N9 O10 4NC doub 15 n n N9 O11 4NC sing 16 n n # _atom_sites.entry_id 7JMV _atom_sites.fract_transf_matrix[1][1] 0.010128 _atom_sites.fract_transf_matrix[1][2] 0.005847 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4NC A 1 301 1 4NC 4NC . C 3 K A 1 302 2 K K . D 4 CA A 1 303 3 CA CA . E 4 CA A 1 304 4 CA CA . F 5 HOH A 1 401 75 HOH HOH . F 5 HOH A 2 402 124 HOH HOH . F 5 HOH A 3 403 148 HOH HOH . F 5 HOH A 4 404 154 HOH HOH . F 5 HOH A 5 405 15 HOH HOH . F 5 HOH A 6 406 137 HOH HOH . F 5 HOH A 7 407 94 HOH HOH . F 5 HOH A 8 408 136 HOH HOH . F 5 HOH A 9 409 143 HOH HOH . F 5 HOH A 10 410 61 HOH HOH . F 5 HOH A 11 411 34 HOH HOH . F 5 HOH A 12 412 162 HOH HOH . F 5 HOH A 13 413 92 HOH HOH . F 5 HOH A 14 414 33 HOH HOH . F 5 HOH A 15 415 152 HOH HOH . F 5 HOH A 16 416 31 HOH HOH . F 5 HOH A 17 417 16 HOH HOH . F 5 HOH A 18 418 69 HOH HOH . F 5 HOH A 19 419 13 HOH HOH . F 5 HOH A 20 420 10 HOH HOH . F 5 HOH A 21 421 22 HOH HOH . F 5 HOH A 22 422 156 HOH HOH . F 5 HOH A 23 423 46 HOH HOH . F 5 HOH A 24 424 65 HOH HOH . F 5 HOH A 25 425 79 HOH HOH . F 5 HOH A 26 426 18 HOH HOH . F 5 HOH A 27 427 21 HOH HOH . F 5 HOH A 28 428 42 HOH HOH . F 5 HOH A 29 429 130 HOH HOH . F 5 HOH A 30 430 12 HOH HOH . F 5 HOH A 31 431 99 HOH HOH . F 5 HOH A 32 432 84 HOH HOH . F 5 HOH A 33 433 89 HOH HOH . F 5 HOH A 34 434 97 HOH HOH . F 5 HOH A 35 435 103 HOH HOH . F 5 HOH A 36 436 104 HOH HOH . F 5 HOH A 37 437 133 HOH HOH . F 5 HOH A 38 438 78 HOH HOH . F 5 HOH A 39 439 8 HOH HOH . F 5 HOH A 40 440 44 HOH HOH . F 5 HOH A 41 441 53 HOH HOH . F 5 HOH A 42 442 90 HOH HOH . F 5 HOH A 43 443 56 HOH HOH . F 5 HOH A 44 444 120 HOH HOH . F 5 HOH A 45 445 107 HOH HOH . F 5 HOH A 46 446 117 HOH HOH . F 5 HOH A 47 447 4 HOH HOH . F 5 HOH A 48 448 43 HOH HOH . F 5 HOH A 49 449 160 HOH HOH . F 5 HOH A 50 450 82 HOH HOH . F 5 HOH A 51 451 122 HOH HOH . F 5 HOH A 52 452 19 HOH HOH . F 5 HOH A 53 453 59 HOH HOH . F 5 HOH A 54 454 141 HOH HOH . F 5 HOH A 55 455 41 HOH HOH . F 5 HOH A 56 456 30 HOH HOH . F 5 HOH A 57 457 50 HOH HOH . F 5 HOH A 58 458 135 HOH HOH . F 5 HOH A 59 459 47 HOH HOH . F 5 HOH A 60 460 68 HOH HOH . F 5 HOH A 61 461 85 HOH HOH . F 5 HOH A 62 462 40 HOH HOH . F 5 HOH A 63 463 9 HOH HOH . F 5 HOH A 64 464 125 HOH HOH . F 5 HOH A 65 465 17 HOH HOH . F 5 HOH A 66 466 80 HOH HOH . F 5 HOH A 67 467 138 HOH HOH . F 5 HOH A 68 468 140 HOH HOH . F 5 HOH A 69 469 134 HOH HOH . F 5 HOH A 70 470 37 HOH HOH . F 5 HOH A 71 471 93 HOH HOH . F 5 HOH A 72 472 123 HOH HOH . F 5 HOH A 73 473 64 HOH HOH . F 5 HOH A 74 474 36 HOH HOH . F 5 HOH A 75 475 55 HOH HOH . F 5 HOH A 76 476 76 HOH HOH . F 5 HOH A 77 477 91 HOH HOH . F 5 HOH A 78 478 45 HOH HOH . F 5 HOH A 79 479 139 HOH HOH . F 5 HOH A 80 480 7 HOH HOH . F 5 HOH A 81 481 58 HOH HOH . F 5 HOH A 82 482 14 HOH HOH . F 5 HOH A 83 483 20 HOH HOH . F 5 HOH A 84 484 71 HOH HOH . F 5 HOH A 85 485 155 HOH HOH . F 5 HOH A 86 486 87 HOH HOH . F 5 HOH A 87 487 67 HOH HOH . F 5 HOH A 88 488 27 HOH HOH . F 5 HOH A 89 489 105 HOH HOH . F 5 HOH A 90 490 100 HOH HOH . F 5 HOH A 91 491 121 HOH HOH . F 5 HOH A 92 492 60 HOH HOH . F 5 HOH A 93 493 101 HOH HOH . F 5 HOH A 94 494 159 HOH HOH . F 5 HOH A 95 495 128 HOH HOH . F 5 HOH A 96 496 39 HOH HOH . F 5 HOH A 97 497 6 HOH HOH . F 5 HOH A 98 498 54 HOH HOH . F 5 HOH A 99 499 119 HOH HOH . F 5 HOH A 100 500 28 HOH HOH . F 5 HOH A 101 501 72 HOH HOH . F 5 HOH A 102 502 57 HOH HOH . F 5 HOH A 103 503 29 HOH HOH . F 5 HOH A 104 504 132 HOH HOH . F 5 HOH A 105 505 131 HOH HOH . F 5 HOH A 106 506 144 HOH HOH . F 5 HOH A 107 507 118 HOH HOH . F 5 HOH A 108 508 157 HOH HOH . F 5 HOH A 109 509 73 HOH HOH . F 5 HOH A 110 510 115 HOH HOH . F 5 HOH A 111 511 66 HOH HOH . F 5 HOH A 112 512 52 HOH HOH . F 5 HOH A 113 513 32 HOH HOH . F 5 HOH A 114 514 23 HOH HOH . F 5 HOH A 115 515 24 HOH HOH . F 5 HOH A 116 516 49 HOH HOH . F 5 HOH A 117 517 62 HOH HOH . F 5 HOH A 118 518 151 HOH HOH . F 5 HOH A 119 519 86 HOH HOH . F 5 HOH A 120 520 88 HOH HOH . F 5 HOH A 121 521 110 HOH HOH . F 5 HOH A 122 522 142 HOH HOH . F 5 HOH A 123 523 158 HOH HOH . F 5 HOH A 124 524 163 HOH HOH . F 5 HOH A 125 525 127 HOH HOH . F 5 HOH A 126 526 77 HOH HOH . F 5 HOH A 127 527 81 HOH HOH . F 5 HOH A 128 528 150 HOH HOH . F 5 HOH A 129 529 51 HOH HOH . F 5 HOH A 130 530 95 HOH HOH . F 5 HOH A 131 531 1 HOH HOH . F 5 HOH A 132 532 106 HOH HOH . F 5 HOH A 133 533 116 HOH HOH . F 5 HOH A 134 534 113 HOH HOH . F 5 HOH A 135 535 3 HOH HOH . F 5 HOH A 136 536 63 HOH HOH . F 5 HOH A 137 537 74 HOH HOH . F 5 HOH A 138 538 11 HOH HOH . F 5 HOH A 139 539 25 HOH HOH . F 5 HOH A 140 540 48 HOH HOH . F 5 HOH A 141 541 98 HOH HOH . F 5 HOH A 142 542 126 HOH HOH . F 5 HOH A 143 543 153 HOH HOH . F 5 HOH A 144 544 5 HOH HOH . F 5 HOH A 145 545 129 HOH HOH . F 5 HOH A 146 546 112 HOH HOH . F 5 HOH A 147 547 26 HOH HOH . F 5 HOH A 148 548 108 HOH HOH . F 5 HOH A 149 549 111 HOH HOH . F 5 HOH A 150 550 70 HOH HOH . F 5 HOH A 151 551 149 HOH HOH . F 5 HOH A 152 552 109 HOH HOH . F 5 HOH A 153 553 114 HOH HOH . F 5 HOH A 154 554 96 HOH HOH . F 5 HOH A 155 555 145 HOH HOH . F 5 HOH A 156 556 161 HOH HOH . F 5 HOH A 157 557 83 HOH HOH . F 5 HOH A 158 558 102 HOH HOH . F 5 HOH A 159 559 35 HOH HOH . F 5 HOH A 160 560 38 HOH HOH . F 5 HOH A 161 561 2 HOH HOH . F 5 HOH A 162 562 147 HOH HOH . F 5 HOH A 163 563 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4NC . . . B 2 32.76 -28.723 -8.163 1 15.63 ? C1 4NC 301 A 1 HETATM 2 C C2 4NC . . . B 2 32.899 -27.668 -7.3 1 15.28 ? C2 4NC 301 A 1 HETATM 3 C C3 4NC . . . B 2 33.233 -26.423 -7.78 1 18.97 ? C3 4NC 301 A 1 HETATM 4 C C4 4NC . . . B 2 33.431 -26.249 -9.144 1 21.85 ? C4 4NC 301 A 1 HETATM 5 C C5 4NC . . . B 2 33.29 -27.309 -10.021 1 20.45 ? C5 4NC 301 A 1 HETATM 6 C C6 4NC . . . B 2 32.959 -28.563 -9.53 1 15.99 ? C6 4NC 301 A 1 HETATM 7 O O7 4NC . . . B 2 32.343 -29.939 -7.694 1 17.55 ? O7 4NC 301 A 1 HETATM 8 O O8 4NC . . . B 2 32.709 -27.875 -5.943 1 17.57 ? O8 4NC 301 A 1 HETATM 9 N N9 4NC . . . B 2 33.68 -24.919 -9.641 1 27.3 ? N9 4NC 301 A 1 HETATM 10 O O10 4NC . . . B 2 33.911 -24.682 -10.785 1 27.57 ? O10 4NC 301 A 1 HETATM 11 O O11 4NC . . . B 2 33.366 -23.862 -8.788 1 27.23 ? O11 4NC 301 A 1 HETATM 12 H H3 4NC . . . B 2 33.341 -25.587 -7.101 1 22.74 ? H3 4NC 301 A 1 HETATM 13 H H5 4NC . . . B 2 33.437 -27.161 -11.083 1 24.53 ? H5 4NC 301 A 1 HETATM 14 H H6 4NC . . . B 2 32.858 -29.407 -10.201 1 19.18 ? H6 4NC 301 A 1 HETATM 15 H HO7 4NC . . . B 2 32.684 -30.088 -6.826 1 21.05 ? HO7 4NC 301 A 1 HETATM 16 H HO8 4NC . . . B 2 32.295 -28.711 -5.804 1 21.07 ? HO8 4NC 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #