data_7JN7 # _model_server_result.job_id iZ7yKOczarNY1qyG7UhPvQ _model_server_result.datetime_utc '2024-11-13 20:01:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jn7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 7JN7 # _exptl.entry_id 7JN7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 214.07 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[(2~{R})-2-azanyl-3-methyl-butanoyl]pyrrolidin-2-yl]boronic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JN7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 758 A SER 730 1_555 E B15 GK2 . A GK2 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 D OG SER 758 D SER 730 1_555 F B15 GK2 . D GK2 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? # _chem_comp.formula 'C9 H19 B N2 O3' _chem_comp.formula_weight 214.07 _chem_comp.id GK2 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[(2~{R})-2-azanyl-3-methyl-butanoyl]pyrrolidin-2-yl]boronic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O17 B15 GK2 sing 83 n n O14 C8 GK2 doub 84 n n B15 C4 GK2 sing 85 n n B15 O16 GK2 sing 86 n n C4 N5 GK2 sing 87 n n C4 C3 GK2 sing 88 n n C8 N5 GK2 sing 89 n n C8 C9 GK2 sing 90 n n N5 C1 GK2 sing 91 n n C9 N13 GK2 sing 92 n n C9 C10 GK2 sing 93 n n C3 C2 GK2 sing 94 n n C12 C10 GK2 sing 95 n n C10 C11 GK2 sing 96 n n C1 C2 GK2 sing 97 n n C4 H1 GK2 sing 98 n n C3 H2 GK2 sing 99 n n C3 H3 GK2 sing 100 n n C2 H4 GK2 sing 101 n n C2 H5 GK2 sing 102 n n C1 H6 GK2 sing 103 n n C1 H7 GK2 sing 104 n n C9 H8 GK2 sing 105 n n C10 H9 GK2 sing 106 n n C11 H10 GK2 sing 107 n n C11 H11 GK2 sing 108 n n C11 H12 GK2 sing 109 n n C12 H13 GK2 sing 110 n n C12 H14 GK2 sing 111 n n C12 H15 GK2 sing 112 n n N13 H16 GK2 sing 113 n n N13 H17 GK2 sing 114 n n O16 H19 GK2 sing 115 n n O17 H20 GK2 sing 116 n n # _atom_sites.entry_id 7JN7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GK2 A 1 901 901 GK2 GK2 . F 3 GK2 D 1 901 902 GK2 GK2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 GK2 . . . E 3 160.401 163.382 176.352 1 41.91 ? C4 GK2 901 A 1 HETATM 2 C C3 GK2 . . . E 3 159.094 162.597 176.291 1 41.87 ? C3 GK2 901 A 1 HETATM 3 C C2 GK2 . . . E 3 159.275 161.347 177.127 1 41.7 ? C2 GK2 901 A 1 HETATM 4 C C1 GK2 . . . E 3 160.701 161.352 177.653 1 41.8 ? C1 GK2 901 A 1 HETATM 5 N N5 GK2 . . . E 3 161.362 162.477 177 1 41.83 ? N5 GK2 901 A 1 HETATM 6 C C8 GK2 . . . E 3 162.67 162.737 176.905 1 41.83 ? C8 GK2 901 A 1 HETATM 7 C C9 GK2 . . . E 3 163.722 161.837 177.505 1 42.45 ? C9 GK2 901 A 1 HETATM 8 C C10 GK2 . . . E 3 163.578 161.5 178.998 1 41.93 ? C10 GK2 901 A 1 HETATM 9 C C11 GK2 . . . E 3 164.921 160.979 179.515 1 41.65 ? C11 GK2 901 A 1 HETATM 10 C C12 GK2 . . . E 3 163.069 162.659 179.858 1 42.29 ? C12 GK2 901 A 1 HETATM 11 N N13 GK2 . . . E 3 163.853 160.591 176.699 1 42.73 ? N13 GK2 901 A 1 HETATM 12 O O14 GK2 . . . E 3 163.074 163.71 176.296 1 42.04 ? O14 GK2 901 A 1 HETATM 13 B B15 GK2 . . . E 3 160.193 164.768 177.149 1 42.32 ? B15 GK2 901 A 1 HETATM 14 O O16 GK2 . . . E 3 159.603 164.516 178.544 1 42.98 ? O16 GK2 901 A 1 HETATM 15 O O17 GK2 . . . E 3 161.513 165.525 177.333 1 42.75 ? O17 GK2 901 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 61 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #