data_7JO8
#
_model_server_result.job_id            tMBXLNUXZLBy3-atp0nf0A 
_model_server_result.datetime_utc      '2024-11-04 22:48:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jo8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    7JO8 
#
_exptl.entry_id    7JO8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.56 
_cell.angle_gamma         90 
_cell.entry_id            7JO8 
_cell.length_a            79.322 
_cell.length_b            79.221 
_cell.length_c            40.616 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JO8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 89 A CYS 89 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.122 ? 
disulf ? disulf2 B SG CYS 23 B CYS 23 1_555 B SG CYS 89 B CYS 89 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.108 ? 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 218 n n 
C1 C3 MLI sing 219 n n 
C1 H11 MLI sing 220 n n 
C1 H12 MLI sing 221 n n 
C2 O6 MLI doub 222 n n 
C2 O7 MLI sing 223 n n 
C3 O8 MLI doub 224 n n 
C3 O9 MLI sing 225 n n 
#
_atom_sites.entry_id                     7JO8 
_atom_sites.fract_transf_matrix[1][1]    0.012607 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004479 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012623 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026129 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1PE A 1 401 2 1PE PE5 . 
D 3 MLI A 1 402 1 MLI MLI . 
E 4 PG4 B 1 401 1 PG4 PEG . 
F 5 HOH A 1 501 160 HOH HOH . 
F 5 HOH A 2 502 157 HOH HOH . 
F 5 HOH A 3 503 107 HOH HOH . 
F 5 HOH A 4 504 224 HOH HOH . 
F 5 HOH A 5 505 175 HOH HOH . 
F 5 HOH A 6 506 192 HOH HOH . 
F 5 HOH A 7 507 86 HOH HOH . 
F 5 HOH A 8 508 40 HOH HOH . 
F 5 HOH A 9 509 62 HOH HOH . 
F 5 HOH A 10 510 99 HOH HOH . 
F 5 HOH A 11 511 46 HOH HOH . 
F 5 HOH A 12 512 42 HOH HOH . 
F 5 HOH A 13 513 6 HOH HOH . 
F 5 HOH A 14 514 124 HOH HOH . 
F 5 HOH A 15 515 154 HOH HOH . 
F 5 HOH A 16 516 132 HOH HOH . 
F 5 HOH A 17 517 27 HOH HOH . 
F 5 HOH A 18 518 136 HOH HOH . 
F 5 HOH A 19 519 69 HOH HOH . 
F 5 HOH A 20 520 194 HOH HOH . 
F 5 HOH A 21 521 23 HOH HOH . 
F 5 HOH A 22 522 183 HOH HOH . 
F 5 HOH A 23 523 166 HOH HOH . 
F 5 HOH A 24 524 149 HOH HOH . 
F 5 HOH A 25 525 63 HOH HOH . 
F 5 HOH A 26 526 11 HOH HOH . 
F 5 HOH A 27 527 55 HOH HOH . 
F 5 HOH A 28 528 113 HOH HOH . 
F 5 HOH A 29 529 120 HOH HOH . 
F 5 HOH A 30 530 20 HOH HOH . 
F 5 HOH A 31 531 163 HOH HOH . 
F 5 HOH A 32 532 125 HOH HOH . 
F 5 HOH A 33 533 57 HOH HOH . 
F 5 HOH A 34 534 8 HOH HOH . 
F 5 HOH A 35 535 1 HOH HOH . 
F 5 HOH A 36 536 127 HOH HOH . 
F 5 HOH A 37 537 67 HOH HOH . 
F 5 HOH A 38 538 2 HOH HOH . 
F 5 HOH A 39 539 43 HOH HOH . 
F 5 HOH A 40 540 172 HOH HOH . 
F 5 HOH A 41 541 189 HOH HOH . 
F 5 HOH A 42 542 110 HOH HOH . 
F 5 HOH A 43 543 162 HOH HOH . 
F 5 HOH A 44 544 28 HOH HOH . 
F 5 HOH A 45 545 7 HOH HOH . 
F 5 HOH A 46 546 104 HOH HOH . 
F 5 HOH A 47 547 77 HOH HOH . 
F 5 HOH A 48 548 92 HOH HOH . 
F 5 HOH A 49 549 122 HOH HOH . 
F 5 HOH A 50 550 54 HOH HOH . 
F 5 HOH A 51 551 45 HOH HOH . 
F 5 HOH A 52 552 114 HOH HOH . 
F 5 HOH A 53 553 225 HOH HOH . 
F 5 HOH A 54 554 205 HOH HOH . 
F 5 HOH A 55 555 5 HOH HOH . 
F 5 HOH A 56 556 32 HOH HOH . 
F 5 HOH A 57 557 106 HOH HOH . 
F 5 HOH A 58 558 26 HOH HOH . 
F 5 HOH A 59 559 135 HOH HOH . 
F 5 HOH A 60 560 88 HOH HOH . 
F 5 HOH A 61 561 51 HOH HOH . 
F 5 HOH A 62 562 15 HOH HOH . 
F 5 HOH A 63 563 74 HOH HOH . 
F 5 HOH A 64 564 47 HOH HOH . 
F 5 HOH A 65 565 193 HOH HOH . 
F 5 HOH A 66 566 146 HOH HOH . 
F 5 HOH A 67 567 38 HOH HOH . 
F 5 HOH A 68 568 214 HOH HOH . 
F 5 HOH A 69 569 170 HOH HOH . 
F 5 HOH A 70 570 159 HOH HOH . 
F 5 HOH A 71 571 144 HOH HOH . 
F 5 HOH A 72 572 210 HOH HOH . 
F 5 HOH A 73 573 65 HOH HOH . 
F 5 HOH A 74 574 150 HOH HOH . 
F 5 HOH A 75 575 176 HOH HOH . 
F 5 HOH A 76 576 145 HOH HOH . 
F 5 HOH A 77 577 61 HOH HOH . 
F 5 HOH A 78 578 219 HOH HOH . 
F 5 HOH A 79 579 217 HOH HOH . 
F 5 HOH A 80 580 140 HOH HOH . 
F 5 HOH A 81 581 229 HOH HOH . 
F 5 HOH A 82 582 228 HOH HOH . 
F 5 HOH A 83 583 152 HOH HOH . 
F 5 HOH A 84 584 197 HOH HOH . 
F 5 HOH A 85 585 109 HOH HOH . 
F 5 HOH A 86 586 89 HOH HOH . 
F 5 HOH A 87 587 133 HOH HOH . 
F 5 HOH A 88 588 208 HOH HOH . 
F 5 HOH A 89 589 97 HOH HOH . 
F 5 HOH A 90 590 131 HOH HOH . 
F 5 HOH A 91 591 177 HOH HOH . 
F 5 HOH A 92 592 58 HOH HOH . 
F 5 HOH A 93 593 102 HOH HOH . 
F 5 HOH A 94 594 167 HOH HOH . 
F 5 HOH A 95 595 137 HOH HOH . 
G 5 HOH B 1 501 181 HOH HOH . 
G 5 HOH B 2 502 227 HOH HOH . 
G 5 HOH B 3 503 178 HOH HOH . 
G 5 HOH B 4 504 161 HOH HOH . 
G 5 HOH B 5 505 49 HOH HOH . 
G 5 HOH B 6 506 190 HOH HOH . 
G 5 HOH B 7 507 34 HOH HOH . 
G 5 HOH B 8 508 226 HOH HOH . 
G 5 HOH B 9 509 41 HOH HOH . 
G 5 HOH B 10 510 95 HOH HOH . 
G 5 HOH B 11 511 223 HOH HOH . 
G 5 HOH B 12 512 33 HOH HOH . 
G 5 HOH B 13 513 141 HOH HOH . 
G 5 HOH B 14 514 56 HOH HOH . 
G 5 HOH B 15 515 50 HOH HOH . 
G 5 HOH B 16 516 171 HOH HOH . 
G 5 HOH B 17 517 60 HOH HOH . 
G 5 HOH B 18 518 83 HOH HOH . 
G 5 HOH B 19 519 117 HOH HOH . 
G 5 HOH B 20 520 71 HOH HOH . 
G 5 HOH B 21 521 21 HOH HOH . 
G 5 HOH B 22 522 37 HOH HOH . 
G 5 HOH B 23 523 79 HOH HOH . 
G 5 HOH B 24 524 64 HOH HOH . 
G 5 HOH B 25 525 75 HOH HOH . 
G 5 HOH B 26 526 25 HOH HOH . 
G 5 HOH B 27 527 101 HOH HOH . 
G 5 HOH B 28 528 18 HOH HOH . 
G 5 HOH B 29 529 29 HOH HOH . 
G 5 HOH B 30 530 48 HOH HOH . 
G 5 HOH B 31 531 142 HOH HOH . 
G 5 HOH B 32 532 100 HOH HOH . 
G 5 HOH B 33 533 12 HOH HOH . 
G 5 HOH B 34 534 78 HOH HOH . 
G 5 HOH B 35 535 165 HOH HOH . 
G 5 HOH B 36 536 59 HOH HOH . 
G 5 HOH B 37 537 105 HOH HOH . 
G 5 HOH B 38 538 22 HOH HOH . 
G 5 HOH B 39 539 3 HOH HOH . 
G 5 HOH B 40 540 16 HOH HOH . 
G 5 HOH B 41 541 82 HOH HOH . 
G 5 HOH B 42 542 103 HOH HOH . 
G 5 HOH B 43 543 128 HOH HOH . 
G 5 HOH B 44 544 94 HOH HOH . 
G 5 HOH B 45 545 4 HOH HOH . 
G 5 HOH B 46 546 85 HOH HOH . 
G 5 HOH B 47 547 139 HOH HOH . 
G 5 HOH B 48 548 44 HOH HOH . 
G 5 HOH B 49 549 164 HOH HOH . 
G 5 HOH B 50 550 108 HOH HOH . 
G 5 HOH B 51 551 9 HOH HOH . 
G 5 HOH B 52 552 153 HOH HOH . 
G 5 HOH B 53 553 30 HOH HOH . 
G 5 HOH B 54 554 93 HOH HOH . 
G 5 HOH B 55 555 81 HOH HOH . 
G 5 HOH B 56 556 10 HOH HOH . 
G 5 HOH B 57 557 209 HOH HOH . 
G 5 HOH B 58 558 52 HOH HOH . 
G 5 HOH B 59 559 68 HOH HOH . 
G 5 HOH B 60 560 129 HOH HOH . 
G 5 HOH B 61 561 35 HOH HOH . 
G 5 HOH B 62 562 73 HOH HOH . 
G 5 HOH B 63 563 187 HOH HOH . 
G 5 HOH B 64 564 76 HOH HOH . 
G 5 HOH B 65 565 173 HOH HOH . 
G 5 HOH B 66 566 90 HOH HOH . 
G 5 HOH B 67 567 36 HOH HOH . 
G 5 HOH B 68 568 31 HOH HOH . 
G 5 HOH B 69 569 70 HOH HOH . 
G 5 HOH B 70 570 200 HOH HOH . 
G 5 HOH B 71 571 116 HOH HOH . 
G 5 HOH B 72 572 17 HOH HOH . 
G 5 HOH B 73 573 72 HOH HOH . 
G 5 HOH B 74 574 130 HOH HOH . 
G 5 HOH B 75 575 180 HOH HOH . 
G 5 HOH B 76 576 143 HOH HOH . 
G 5 HOH B 77 577 66 HOH HOH . 
G 5 HOH B 78 578 53 HOH HOH . 
G 5 HOH B 79 579 84 HOH HOH . 
G 5 HOH B 80 580 215 HOH HOH . 
G 5 HOH B 81 581 19 HOH HOH . 
G 5 HOH B 82 582 39 HOH HOH . 
G 5 HOH B 83 583 115 HOH HOH . 
G 5 HOH B 84 584 24 HOH HOH . 
G 5 HOH B 85 585 147 HOH HOH . 
G 5 HOH B 86 586 13 HOH HOH . 
G 5 HOH B 87 587 112 HOH HOH . 
G 5 HOH B 88 588 188 HOH HOH . 
G 5 HOH B 89 589 96 HOH HOH . 
G 5 HOH B 90 590 199 HOH HOH . 
G 5 HOH B 91 591 80 HOH HOH . 
G 5 HOH B 92 592 203 HOH HOH . 
G 5 HOH B 93 593 118 HOH HOH . 
G 5 HOH B 94 594 14 HOH HOH . 
G 5 HOH B 95 595 134 HOH HOH . 
G 5 HOH B 96 596 156 HOH HOH . 
G 5 HOH B 97 597 121 HOH HOH . 
G 5 HOH B 98 598 91 HOH HOH . 
G 5 HOH B 99 599 182 HOH HOH . 
G 5 HOH B 100 600 174 HOH HOH . 
G 5 HOH B 101 601 213 HOH HOH . 
G 5 HOH B 102 602 151 HOH HOH . 
G 5 HOH B 103 603 185 HOH HOH . 
G 5 HOH B 104 604 179 HOH HOH . 
G 5 HOH B 105 605 169 HOH HOH . 
G 5 HOH B 106 606 138 HOH HOH . 
G 5 HOH B 107 607 111 HOH HOH . 
G 5 HOH B 108 608 87 HOH HOH . 
G 5 HOH B 109 609 204 HOH HOH . 
G 5 HOH B 110 610 148 HOH HOH . 
G 5 HOH B 111 611 202 HOH HOH . 
G 5 HOH B 112 612 158 HOH HOH . 
G 5 HOH B 113 613 184 HOH HOH . 
G 5 HOH B 114 614 98 HOH HOH . 
G 5 HOH B 115 615 155 HOH HOH . 
G 5 HOH B 116 616 123 HOH HOH . 
G 5 HOH B 117 617 119 HOH HOH . 
G 5 HOH B 118 618 168 HOH HOH . 
G 5 HOH B 119 619 126 HOH HOH . 
G 5 HOH B 120 620 206 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . D 3 14.996 16.82 16.855 1 55.6 ? C1 MLI 402 A 1 
HETATM 2 C C2 MLI . . . D 3 14.781 17.019 15.348 1 59.98 ? C2 MLI 402 A 1 
HETATM 3 C C3 MLI . . . D 3 16.223 15.965 17.193 1 51.82 ? C3 MLI 402 A 1 
HETATM 4 O O6 MLI . . . D 3 15.366 16.292 14.514 1 68.28 ? O6 MLI 402 A 1 
HETATM 5 O O7 MLI . . . D 3 14.006 17.934 14.976 1 56.86 ? O7 MLI 402 A 1 
HETATM 6 O O8 MLI . . . D 3 16.208 14.739 16.961 1 59.7 ? O8 MLI 402 A 1 
HETATM 7 O O9 MLI . . . D 3 17.235 16.537 17.688 1 47.54 ? O9 MLI 402 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#